Wall clock time and date at job start Wed Apr 1 2020 04:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46736 * 240.00123 * 3 2 1 5 5 H 1.48499 * 109.46902 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47104 * 119.99806 * 3 2 1 7 7 C 1.38654 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99952 * 185.05705 * 9 7 2 11 11 C 1.38875 * 120.07001 * 354.46995 * 10 9 7 12 12 C 1.38099 * 119.93031 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06889 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.92643 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47274 * 90.00206 * 14 13 12 16 16 O 1.21284 * 119.99657 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00142 * 179.97438 * 15 14 13 18 18 C 1.46507 * 120.00248 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.46997 * 180.02562 * 18 17 15 20 20 N 1.32119 * 120.00947 * 90.00553 * 19 18 17 21 21 C 1.32137 * 120.01761 * 179.97438 * 20 19 18 22 22 C 1.38345 * 120.03527 * 359.97438 * 21 20 19 23 23 N 1.32144 * 120.01637 * 0.02562 * 22 21 20 24 24 C 1.32249 * 119.98541 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.01602 * 179.97438 * 24 23 22 26 26 C 1.38299 * 120.13883 * 0.25095 * 13 12 11 27 27 C 1.38103 * 120.06571 * 359.45854 * 26 13 12 28 28 H 0.97003 * 119.99948 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.03329 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.96319 * 179.97438 * 12 11 10 31 31 H 1.08993 * 109.47408 * 329.99393 * 14 13 12 32 32 H 1.09003 * 109.46488 * 209.99382 * 14 13 12 33 33 H 0.96996 * 120.00091 * 0.02562 * 17 15 14 34 34 H 1.09000 * 109.46430 * 60.00536 * 18 17 15 35 35 H 1.09002 * 109.46837 * 300.00543 * 18 17 15 36 36 H 1.08009 * 119.98306 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99175 * 179.74282 * 22 21 20 38 38 H 1.07995 * 119.96687 * 179.70537 * 26 13 12 39 39 H 1.08007 * 120.03170 * 180.27542 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0699 -3.5046 0.1087 11 6 3.4571 -3.4395 0.0953 12 6 4.2023 -4.5971 0.2039 13 6 3.5685 -5.8203 0.3254 14 6 4.3849 -7.0816 0.4431 15 6 4.6642 -7.3654 1.8965 16 8 4.2424 -6.6168 2.7525 17 7 5.3828 -8.4509 2.2452 18 6 5.6549 -8.7265 3.6582 19 6 6.4711 -9.9878 3.7758 20 7 7.7907 -9.9246 3.7625 21 6 8.5065 -11.0304 3.8661 22 6 7.8750 -12.2552 3.9892 23 7 6.5552 -12.3200 4.0026 24 6 5.8380 -11.2138 3.8979 25 17 4.1041 -11.2981 3.9148 26 6 2.1873 -5.8890 0.3333 27 6 1.4365 -4.7344 0.2311 28 1 -0.4850 0.8401 -0.0004 29 1 3.9526 -2.4846 -0.0009 30 1 5.2810 -4.5472 0.1931 31 1 5.3270 -6.9557 -0.0902 32 1 3.8308 -7.9146 0.0103 33 1 5.7205 -9.0494 1.5606 34 1 4.7127 -8.8519 4.1917 35 1 6.2093 -7.8936 4.0905 36 1 9.5853 -10.9782 3.8548 37 1 8.4607 -13.1590 4.0697 38 1 1.6953 -6.8461 0.4236 39 1 0.3578 -4.7882 0.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808067123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:08 Heat of formation + Delta-G solvation = -17.710944 kcal Electronic energy + Delta-G solvation = -25738.094331 eV Core-core repulsion = 21671.689428 eV Total energy + Delta-G solvation = -4066.404903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.38154 -41.05335 -40.34191 -38.24118 -37.97811 -36.51404 -35.14934 -34.38734 -33.18778 -32.39839 -31.75404 -29.05266 -27.72533 -26.74185 -25.74125 -24.03951 -23.61609 -22.52772 -21.36759 -19.83026 -19.17900 -18.88920 -18.54299 -18.18987 -17.52552 -16.66159 -16.57093 -16.40426 -16.15187 -15.99334 -15.66534 -15.50005 -15.15252 -14.97812 -14.59308 -14.41301 -14.28116 -13.97221 -13.74639 -13.57080 -13.38201 -12.94510 -12.89019 -12.76449 -12.45185 -12.41701 -12.29343 -12.27554 -12.20766 -12.13184 -11.16500 -11.03527 -10.75979 -10.35960 -10.28030 -10.17256 -9.74137 -8.88471 -8.46166 -6.14320 -0.63709 -0.19809 0.52725 0.63735 0.69181 1.34161 1.45498 1.50976 1.71631 2.07143 2.18635 2.50069 2.78947 2.88542 3.05171 3.13330 3.19455 3.54301 3.79253 3.86146 3.91964 4.07602 4.17396 4.22903 4.29327 4.40304 4.51920 4.59710 4.63112 4.72915 4.82499 5.09304 5.10725 5.15903 5.29653 5.33013 5.58477 5.73485 5.79930 5.92798 6.04018 6.24648 6.45102 6.51837 6.98186 7.29202 7.79879 8.77049 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.001838 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.711408 B =15227.994125 C =15785.793984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.244 4.244 12 C -0.059 4.059 13 C -0.145 4.145 14 C -0.076 4.076 15 C 0.517 3.483 16 O -0.572 6.572 17 N -0.712 5.712 18 C 0.173 3.827 19 C 0.075 3.925 20 N -0.428 5.428 21 C 0.066 3.934 22 C 0.088 3.912 23 N -0.455 5.455 24 C 0.124 3.876 25 Cl -0.012 7.012 26 C -0.057 4.057 27 C -0.207 4.207 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.223 0.777 37 H 0.224 0.776 38 H 0.147 0.853 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.374 -28.889 5.422 36.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.077 4.077 13 C -0.146 4.146 14 C -0.115 4.115 15 C 0.305 3.695 16 O -0.450 6.450 17 N -0.367 5.367 18 C 0.048 3.952 19 C -0.065 4.065 20 N -0.144 5.144 21 C -0.096 4.096 22 C -0.073 4.073 23 N -0.172 5.172 24 C -0.042 4.042 25 Cl 0.017 6.983 26 C -0.075 4.075 27 C -0.226 4.226 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.250 0.750 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.239 0.761 37 H 0.240 0.760 38 H 0.165 0.835 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 20.451 -28.162 6.024 35.322 hybrid contribution -0.274 0.738 -0.034 0.788 sum 20.177 -27.424 5.989 34.570 Atomic orbital electron populations 1.70186 1.08011 1.28814 1.48967 1.26623 0.96912 1.02785 0.95913 0.84641 0.77391 0.74207 0.79911 1.17897 1.19483 1.18434 1.21780 0.92480 0.81524 1.53244 0.88259 1.83937 1.35954 1.12594 1.81594 1.19945 0.91687 0.87968 0.94258 1.21230 0.93106 1.00038 1.11979 1.20940 0.99730 0.91112 0.95957 1.19233 0.93313 0.94493 1.07595 1.20523 1.02747 0.96528 0.91733 1.21167 0.76594 0.79532 0.92192 1.90774 1.52119 1.48659 1.53476 1.45713 1.55912 1.27636 1.07404 1.19944 0.98129 0.92588 0.84511 1.21664 0.91438 0.93786 0.99628 1.68474 1.04773 1.32934 1.08200 1.24730 1.04034 0.87592 0.93211 1.24680 0.88578 1.01723 0.92344 1.67949 1.09290 1.29728 1.10226 1.22696 0.89412 0.91158 1.00915 1.98459 1.05392 1.98362 1.96137 1.20880 0.93528 0.96922 0.96157 1.20442 0.99881 0.90723 1.11566 0.91863 0.86486 0.84326 0.85231 0.85018 0.75004 0.89714 0.90096 0.76102 0.75952 0.83531 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.40 13.67 21.61 0.30 -58.10 16 2 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 3 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 4 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.41 -25.19 9.49 67.92 0.64 -24.55 16 8 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 9 O -0.23 -14.79 9.76 -22.79 -0.22 -15.01 16 10 C 0.11 5.91 6.65 22.58 0.15 6.06 16 11 C -0.24 -11.34 9.17 22.39 0.21 -11.13 16 12 C -0.06 -2.16 9.69 22.25 0.22 -1.95 16 13 C -0.15 -4.64 4.38 -19.84 -0.09 -4.73 16 14 C -0.08 -1.50 5.83 29.10 0.17 -1.33 16 15 C 0.52 12.42 7.82 87.66 0.69 13.10 16 16 O -0.57 -20.40 16.03 -3.04 -0.05 -20.45 16 17 N -0.71 -12.05 5.55 -466.78 -2.59 -14.64 16 18 C 0.17 3.19 5.58 85.63 0.48 3.67 16 19 C 0.07 1.13 6.16 42.58 0.26 1.39 16 20 N -0.43 -5.52 10.42 -183.21 -1.91 -7.43 16 21 C 0.07 0.34 11.22 84.67 0.95 1.29 16 22 C 0.09 0.44 11.22 84.67 0.95 1.39 16 23 N -0.46 -5.97 10.49 -186.10 -1.95 -7.92 16 24 C 0.12 1.90 7.28 84.70 0.62 2.51 16 25 Cl -0.01 -0.20 27.48 -2.72 -0.07 -0.27 16 26 C -0.06 -2.02 9.69 22.25 0.22 -1.81 16 27 C -0.21 -9.42 9.99 22.39 0.22 -9.20 16 28 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 30 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.41 4.52 8.46 -92.71 -0.78 3.74 16 34 H 0.08 1.72 6.91 -2.39 -0.02 1.70 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.22 -0.77 8.06 -2.91 -0.02 -0.79 16 37 H 0.22 -0.88 8.06 -2.91 -0.02 -0.90 16 38 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -87.90 363.06 2.02 -85.89 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.34 Total: 17.81 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 6.15 Total: -26.31 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -6.15 Total: -88.10 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.27 Total: -35.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.07 Total: -0.27 kcal Total: -87.90 2.02 -85.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808067123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.176 kcal (2) G-P(sol) polarization free energy of solvation -87.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds