Wall clock time and date at job start Wed Apr 1 2020 04:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00013 * 2 1 4 4 H 1.48498 * 109.47303 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47234 * 119.99982 * 3 2 1 6 6 H 1.48503 * 109.46923 * 239.99892 * 3 2 1 7 7 C 1.37875 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00394 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47312 * 299.99893 * 9 7 2 11 11 O 1.42911 * 109.46981 * 59.99897 * 9 7 2 12 12 C 1.53001 * 109.47296 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46906 * 180.02562 * 12 9 7 14 14 C 1.46897 * 111.00032 * 293.95293 * 13 12 9 15 15 C 1.52996 * 109.46932 * 163.65459 * 14 13 12 16 16 C 1.53000 * 109.47196 * 179.06290 * 15 14 13 17 17 O 1.42904 * 109.47232 * 180.02562 * 16 15 14 18 18 C 1.46906 * 110.99617 * 170.00489 * 13 12 9 19 19 C 1.50693 * 109.46833 * 284.46285 * 18 13 12 20 20 C 1.38273 * 119.98177 * 275.64171 * 19 18 13 21 21 C 1.38204 * 120.03809 * 179.76836 * 20 19 18 22 22 C 1.38345 * 119.99987 * 0.51415 * 21 20 19 23 23 Cl 1.73602 * 120.01825 * 179.72166 * 22 21 20 24 24 C 1.38443 * 119.96371 * 359.73824 * 22 21 20 25 25 Cl 1.73599 * 120.02220 * 179.97438 * 24 22 21 26 26 C 1.38208 * 119.98132 * 95.92209 * 19 18 13 27 27 H 0.97002 * 119.99824 * 179.97438 * 1 2 3 28 28 H 0.96696 * 113.99883 * 60.00229 * 11 9 7 29 29 H 1.08998 * 109.47247 * 300.00416 * 12 9 7 30 30 H 1.09002 * 109.46768 * 60.00299 * 12 9 7 31 31 H 1.09000 * 109.47533 * 283.65335 * 14 13 12 32 32 H 1.09005 * 109.47061 * 43.65998 * 14 13 12 33 33 H 1.09005 * 109.47306 * 299.05832 * 15 14 13 34 34 H 1.08998 * 109.47434 * 59.06476 * 15 14 13 35 35 H 1.08997 * 109.47204 * 299.99806 * 16 15 14 36 36 H 1.08997 * 109.47512 * 59.99884 * 16 15 14 37 37 H 0.96708 * 113.99912 * 179.97438 * 17 16 15 38 38 H 1.09001 * 109.47173 * 44.46355 * 18 13 12 39 39 H 1.08992 * 109.46920 * 164.46056 * 18 13 12 40 40 H 1.07999 * 119.97627 * 0.02562 * 20 19 18 41 41 H 1.07994 * 119.99851 * 180.23124 * 21 20 19 42 42 H 1.07991 * 120.00117 * 359.95247 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5568 0.8903 11 8 0.4299 -2.5751 -1.1666 12 6 2.2453 -3.6621 0.0005 13 7 1.5107 -4.9343 -0.0001 14 6 0.7648 -5.1121 1.2529 15 6 -0.2869 -6.2079 1.0692 16 6 -1.0481 -6.4094 2.3810 17 8 -2.0300 -7.4334 2.2095 18 6 2.4172 -6.0655 -0.2382 19 6 2.7950 -6.1081 -1.6964 20 6 1.9654 -6.7363 -2.6069 21 6 2.3083 -6.7719 -3.9453 22 6 3.4874 -6.1882 -4.3730 23 17 3.9221 -6.2390 -6.0530 24 6 4.3206 -5.5638 -3.4606 25 17 5.8008 -4.8314 -3.9956 26 6 3.9732 -5.5244 -2.1220 27 1 -0.4850 -0.8401 -0.0004 28 1 0.9223 -2.5300 -1.9976 29 1 2.8720 -3.6044 -0.8894 30 1 2.8719 -3.6044 0.8906 31 1 1.4531 -5.3988 2.0480 32 1 0.2723 -4.1767 1.5185 33 1 -0.9852 -5.9137 0.2855 34 1 0.2041 -7.1393 0.7873 35 1 -0.3499 -6.7037 3.1646 36 1 -1.5392 -5.4781 2.6629 37 1 -2.5516 -7.6151 3.0034 38 1 3.3160 -5.9444 0.3666 39 1 1.9180 -6.9949 0.0352 40 1 1.0469 -7.1956 -2.2727 41 1 1.6580 -7.2594 -4.6565 42 1 4.6225 -5.0373 -1.4097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809575055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:00 Heat of formation + Delta-G solvation = -97.438200 kcal Electronic energy + Delta-G solvation = -26185.993133 eV Core-core repulsion = 22217.238491 eV Total energy + Delta-G solvation = -3968.754643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80557 -38.08235 -36.92289 -36.57773 -36.51191 -35.27563 -32.43685 -32.06624 -31.00434 -30.97118 -28.28456 -26.05634 -24.92211 -23.04433 -22.94138 -21.58557 -21.21821 -20.02999 -17.49465 -17.38630 -17.20894 -16.20137 -15.99480 -15.55513 -15.34662 -14.97723 -14.45804 -14.17421 -14.05345 -13.97161 -13.75583 -13.55983 -13.22149 -13.07936 -12.71555 -12.25629 -11.99822 -11.94781 -11.78073 -11.59776 -11.50452 -11.32501 -11.07001 -11.05997 -10.92586 -10.83192 -10.70803 -10.66233 -10.12184 -10.03833 -9.95937 -9.21909 -9.01061 -8.67806 -8.47077 -8.07433 -7.86958 -6.35713 -4.19497 0.88819 1.03653 1.77572 2.14662 3.32860 3.41116 3.42891 3.61578 3.97256 4.44690 4.51375 4.56304 4.70831 4.93830 5.01242 5.09418 5.17428 5.23188 5.30407 5.35042 5.43010 5.44248 5.60890 5.62201 5.67712 5.82021 5.85062 5.93681 5.96651 6.05395 6.26235 6.28166 6.36249 6.41732 6.52943 6.62101 7.26408 7.38238 7.51831 7.56513 8.00861 8.34256 8.85406 9.20874 9.66582 11.04354 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.006641 B = 0.004327 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4214.909144 B = 6469.971004 C = 9708.300841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.037 3.963 3 Si 1.063 2.937 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.652 4.652 8 H 0.047 0.953 9 C 0.223 3.777 10 H 0.047 0.953 11 O -0.569 6.569 12 C 0.035 3.965 13 N -0.520 5.520 14 C 0.058 3.942 15 C -0.113 4.113 16 C 0.076 3.924 17 O -0.576 6.576 18 C 0.085 3.915 19 C -0.047 4.047 20 C -0.079 4.079 21 C -0.100 4.100 22 C -0.034 4.034 23 Cl -0.058 7.058 24 C -0.028 4.028 25 Cl -0.055 7.055 26 C -0.092 4.092 27 H 0.284 0.716 28 H 0.351 0.649 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.377 0.623 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -16.920 -1.998 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.172 4.172 3 Si 0.892 3.108 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.690 4.690 8 H 0.065 0.935 9 C 0.165 3.835 10 H 0.064 0.936 11 O -0.373 6.373 12 C -0.092 4.092 13 N -0.243 5.243 14 C -0.070 4.070 15 C -0.151 4.151 16 C -0.002 4.002 17 O -0.381 6.381 18 C -0.043 4.043 19 C -0.048 4.048 20 C -0.098 4.098 21 C -0.119 4.119 22 C -0.062 4.062 23 Cl -0.029 7.029 24 C -0.056 4.056 25 Cl -0.026 7.026 26 C -0.111 4.111 27 H 0.096 0.904 28 H 0.195 0.805 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.223 0.777 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.682 -15.252 -2.714 16.184 hybrid contribution 1.404 -1.432 0.681 2.118 sum 6.086 -16.684 -2.033 17.875 Atomic orbital electron populations 1.70638 1.06893 1.32284 1.42768 1.25719 0.96469 1.02301 0.92717 0.83645 0.75015 0.75639 0.76522 1.20723 1.21527 1.21384 1.22421 0.94298 0.92619 1.59677 0.93469 1.19479 0.88134 0.90122 0.85765 0.93556 1.86461 1.38641 1.96477 1.15705 1.23018 0.97176 0.89088 0.99922 1.61952 1.26563 1.01537 1.34291 1.21997 0.95239 0.99712 0.90071 1.21475 0.97872 0.98677 0.97043 1.22163 0.90151 0.90152 0.97774 1.86474 1.52484 1.58520 1.40596 1.21137 0.96055 0.96176 0.90902 1.19828 0.92837 0.95617 0.96522 1.21068 0.99085 0.98020 0.91601 1.21008 0.94623 0.99566 0.96676 1.20729 0.96678 1.03300 0.85491 1.98375 1.92859 1.97275 1.14426 1.20690 0.90332 1.00933 0.93631 1.98384 1.32543 1.81281 1.90345 1.20974 0.97588 0.99349 0.93206 0.90376 0.80461 0.91270 0.95347 0.95321 0.89506 0.90106 0.91824 0.94048 0.93322 0.77705 0.93901 0.89713 0.84396 0.84195 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.53 55.43 0.75 -26.06 16 2 C 0.04 1.04 5.40 -17.82 -0.10 0.94 16 3 Si 1.06 24.79 29.90 -169.99 -5.08 19.70 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.65 -17.65 8.76 -34.44 -0.30 -17.95 16 8 H 0.05 1.27 7.74 -52.49 -0.41 0.86 16 9 C 0.22 5.34 2.34 -27.88 -0.07 5.28 16 10 H 0.05 1.20 6.15 -51.93 -0.32 0.88 16 11 O -0.57 -14.12 11.88 -35.23 -0.42 -14.54 16 12 C 0.04 0.68 4.38 -3.82 -0.02 0.66 16 13 N -0.52 -8.29 4.25 -236.08 -1.00 -9.29 16 14 C 0.06 0.86 4.83 -3.83 -0.02 0.84 16 15 C -0.11 -1.49 5.67 -26.73 -0.15 -1.64 16 16 C 0.08 0.87 7.05 37.16 0.26 1.13 16 17 O -0.58 -6.62 13.66 -35.23 -0.48 -7.10 16 18 C 0.08 1.09 4.96 -4.98 -0.02 1.06 16 19 C -0.05 -0.60 5.02 -104.62 -0.53 -1.13 16 20 C -0.08 -0.93 9.72 -39.58 -0.38 -1.31 16 21 C -0.10 -1.14 9.83 -39.55 -0.39 -1.53 16 22 C -0.03 -0.43 6.32 -39.47 -0.25 -0.68 16 23 Cl -0.06 -0.69 27.96 -51.86 -1.45 -2.14 16 24 C -0.03 -0.38 6.32 -39.46 -0.25 -0.63 16 25 Cl -0.05 -0.71 27.96 -51.86 -1.45 -2.16 16 26 C -0.09 -1.21 8.19 -39.55 -0.32 -1.54 16 27 H 0.28 8.69 6.47 -40.82 -0.26 8.43 16 28 H 0.35 8.19 9.04 45.56 0.41 8.60 16 29 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 30 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.09 1.51 5.93 -51.93 -0.31 1.21 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.78 6.53 -51.93 -0.34 0.44 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.38 2.50 9.12 45.56 0.42 2.91 16 38 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 39 H 0.08 0.95 6.24 -51.93 -0.32 0.62 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.14 1.76 8.00 -52.49 -0.42 1.34 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -31.31 375.45 -10.06 -41.37 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.04 Total: 11.06 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.53 Total: -16.49 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.25 Total: -35.35 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.90 Total: -21.64 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -2.90 Total: -4.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.31 -10.06 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809575055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.070 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds