Wall clock time and date at job start Wed Apr 1 2020 04:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48500 * 109.47268 * 240.00272 * 3 2 1 5 5 H 1.48504 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47219 * 120.00005 * 3 2 1 7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 N 1.40101 * 119.99840 * 179.97438 * 17 15 14 19 19 C 1.39003 * 119.99714 * 180.02562 * 18 17 15 20 20 C 1.39110 * 119.69639 * 179.72654 * 19 18 17 21 21 C 1.38338 * 119.12715 * 179.76721 * 20 19 18 22 22 C 1.38815 * 118.51915 * 0.49170 * 21 20 19 23 23 C 1.38199 * 119.32188 * 359.75275 * 22 21 20 24 24 Cl 1.73594 * 119.59363 * 179.97438 * 23 22 21 25 25 N 1.32068 * 120.81667 * 359.97438 * 23 22 21 26 26 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 27 27 C 1.38103 * 120.07235 * 359.45128 * 26 13 12 28 28 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 32 32 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 33 33 H 0.96999 * 120.00482 * 359.97438 * 17 15 14 34 34 H 0.97000 * 120.00511 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.43438 * 0.02562 * 20 19 18 36 36 H 1.08000 * 120.73697 * 180.23625 * 21 20 19 37 37 H 1.08001 * 120.34135 * 179.76572 * 22 21 20 38 38 H 1.08004 * 119.96372 * 179.70276 * 26 13 12 39 39 H 1.07998 * 120.03412 * 180.26808 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1078 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3247 14 6 4.3847 -7.0817 0.4426 15 6 4.6632 -7.3659 1.8961 16 8 4.2408 -6.6177 2.7520 17 7 5.3816 -8.4516 2.2448 18 7 5.6409 -8.7155 3.5961 19 6 6.3822 -9.8350 3.9557 20 6 6.6408 -10.0880 5.2990 21 6 7.3757 -11.2081 5.6439 22 6 7.8381 -12.0356 4.6298 23 6 7.5488 -11.7217 3.3154 24 17 8.1241 -12.7512 2.0415 25 7 6.8400 -10.6482 3.0164 26 6 2.1872 -5.8891 0.3317 27 6 1.4365 -4.7345 0.2295 28 1 -0.4850 0.8401 -0.0004 29 1 3.9526 -2.4845 0.0006 30 1 5.2812 -4.5471 0.1948 31 1 3.8311 -7.9145 0.0091 32 1 5.3274 -6.9556 -0.0901 33 1 5.7191 -9.0503 1.5603 34 1 5.3037 -8.1167 4.2807 35 1 6.2691 -9.4209 6.0627 36 1 7.5885 -11.4315 6.6789 37 1 8.4178 -12.9158 4.8655 38 1 1.6952 -6.8463 0.4213 39 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817011574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:09 Heat of formation + Delta-G solvation = 34.659548 kcal Electronic energy + Delta-G solvation = -25484.882746 eV Core-core repulsion = 21420.748798 eV Total energy + Delta-G solvation = -4064.133948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85789 -39.82898 -38.82780 -37.20601 -36.65905 -35.93951 -32.94775 -32.78458 -32.35214 -31.27400 -30.14984 -28.98653 -26.51780 -25.11348 -24.13269 -23.31430 -21.97309 -21.50355 -20.35595 -18.87007 -18.00721 -17.95762 -17.00046 -16.92103 -16.31467 -16.03416 -15.67740 -15.12351 -15.07328 -14.68699 -14.47118 -14.31598 -13.91230 -13.78797 -13.59114 -13.38866 -12.96542 -12.69628 -12.62250 -12.50984 -11.93130 -11.72611 -11.62647 -11.47390 -11.26157 -10.87519 -10.77058 -10.63926 -10.43156 -10.39049 -10.23002 -9.98704 -9.64302 -9.32210 -8.81164 -8.14761 -7.84768 -7.17189 -6.43633 -4.02246 0.56094 0.83199 1.32550 1.62041 2.25881 2.34919 2.57866 3.14025 3.15550 3.18126 3.25320 3.54209 3.98056 4.25608 4.41974 4.48326 4.66835 4.76168 4.85464 4.97581 5.09164 5.21343 5.25741 5.31804 5.38282 5.61982 5.69022 5.72420 5.84497 5.86721 6.22181 6.36918 6.42263 6.70707 6.81285 6.91711 7.05630 7.21368 7.26095 7.36584 7.45616 7.54971 7.83950 8.01415 8.22135 9.01846 9.71982 10.74264 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.001665 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.909855 B =16807.861322 C =17151.858365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.158 3.842 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.174 4.174 14 C -0.066 4.066 15 C 0.509 3.491 16 O -0.522 6.522 17 N -0.527 5.527 18 N -0.513 5.513 19 C 0.427 3.573 20 C -0.230 4.230 21 C -0.013 4.013 22 C -0.219 4.219 23 C 0.231 3.769 24 Cl -0.031 7.031 25 N -0.548 5.548 26 C -0.057 4.057 27 C -0.192 4.192 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.430 0.570 34 H 0.444 0.556 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.109 0.891 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.474 -24.619 7.930 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.175 4.175 14 C -0.108 4.108 15 C 0.295 3.705 16 O -0.395 6.395 17 N -0.277 5.277 18 N -0.240 5.240 19 C 0.189 3.811 20 C -0.256 4.256 21 C -0.039 4.039 22 C -0.244 4.244 23 C 0.067 3.933 24 Cl -0.003 7.003 25 N -0.270 5.270 26 C -0.076 4.076 27 C -0.211 4.211 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.272 0.728 34 H 0.289 0.711 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.127 0.873 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.511 -23.641 7.348 29.214 hybrid contribution 0.798 0.483 0.684 1.157 sum 16.309 -23.158 8.032 29.441 Atomic orbital electron populations 1.70031 1.05951 1.27768 1.45978 1.25292 0.95851 0.98836 0.96550 0.85781 0.78698 0.79766 0.79182 1.19503 1.20277 1.19502 1.21285 0.91787 0.80831 1.52883 0.89102 1.83973 1.34393 1.11477 1.78156 1.19394 0.90302 0.88034 0.91861 1.21104 0.93800 0.98774 1.11562 1.20519 0.98088 0.91731 0.96898 1.18550 0.93144 0.92483 1.13355 1.20315 1.01753 0.98536 0.90154 1.21524 0.77096 0.78856 0.92982 1.90768 1.50247 1.46758 1.51678 1.45208 1.57102 1.28877 0.96478 1.43302 1.57039 1.25566 0.98128 1.17928 0.88796 0.85720 0.88616 1.21281 1.07573 1.02296 0.94440 1.21277 0.91623 0.91185 0.99822 1.21517 1.07812 1.04219 0.90837 1.21178 0.93766 0.90182 0.88211 1.98422 1.86010 1.63492 1.52360 1.66146 1.17113 1.06459 1.37287 1.20410 0.92703 0.96773 0.97678 1.20156 0.99527 0.90255 1.11182 0.91975 0.85545 0.87737 0.88346 0.88385 0.72832 0.71056 0.83904 0.83478 0.83888 0.87292 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.13 9.76 0.07 0.00 -5.13 16 10 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16 11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 12 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 13 C -0.17 -2.95 4.38 -104.58 -0.46 -3.41 16 14 C -0.07 -0.79 5.83 -29.04 -0.17 -0.96 16 15 C 0.51 6.78 7.94 -10.99 -0.09 6.70 16 16 O -0.52 -9.26 15.87 5.56 0.09 -9.17 16 17 N -0.53 -5.66 6.29 31.22 0.20 -5.46 16 18 N -0.51 -5.20 6.42 31.12 0.20 -5.00 16 19 C 0.43 3.96 7.59 -155.02 -1.18 2.78 16 20 C -0.23 -1.54 9.94 -39.22 -0.39 -1.93 16 21 C -0.01 -0.07 10.16 -39.33 -0.40 -0.47 16 22 C -0.22 -1.39 9.87 -39.38 -0.39 -1.78 16 23 C 0.23 1.99 7.27 -17.46 -0.13 1.86 16 24 Cl -0.03 -0.25 29.10 -51.86 -1.51 -1.76 16 25 N -0.55 -5.46 9.35 -9.55 -0.09 -5.55 16 26 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 27 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 30 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.43 3.93 7.95 -182.60 -1.45 2.47 16 34 H 0.44 4.36 7.99 -182.60 -1.46 2.91 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 37 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -34.75 364.09 -10.67 -45.42 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.99 Total: 6.52 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -4.78 Total: -16.30 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 1.07 Total: -40.79 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.75 -10.67 -45.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817011574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.076 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds