Wall clock time and date at job start Wed Apr 1 2020 04:42:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31556 * 1
3 3 Si 1.86800 * 120.00197 * 2 1
4 4 H 1.48500 * 109.47268 * 240.00272 * 3 2 1
5 5 H 1.48504 * 109.46929 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47219 * 120.00005 * 3 2 1
7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1
9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1
10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2
11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7
12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9
13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10
14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12
16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13
17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13
18 18 N 1.40101 * 119.99840 * 179.97438 * 17 15 14
19 19 C 1.39003 * 119.99714 * 180.02562 * 18 17 15
20 20 C 1.39110 * 119.69639 * 179.72654 * 19 18 17
21 21 C 1.38338 * 119.12715 * 179.76721 * 20 19 18
22 22 C 1.38815 * 118.51915 * 0.49170 * 21 20 19
23 23 C 1.38199 * 119.32188 * 359.75275 * 22 21 20
24 24 Cl 1.73594 * 119.59363 * 179.97438 * 23 22 21
25 25 N 1.32068 * 120.81667 * 359.97438 * 23 22 21
26 26 C 1.38300 * 120.13476 * 0.25178 * 13 12 11
27 27 C 1.38103 * 120.07235 * 359.45128 * 26 13 12
28 28 H 0.97002 * 119.99992 * 0.02562 * 1 2 3
29 29 H 1.07996 * 120.03050 * 0.02562 * 11 10 9
30 30 H 1.08003 * 119.96708 * 180.02562 * 12 11 10
31 31 H 1.08999 * 109.46626 * 209.99947 * 14 13 12
32 32 H 1.09004 * 109.47318 * 329.99490 * 14 13 12
33 33 H 0.96999 * 120.00482 * 359.97438 * 17 15 14
34 34 H 0.97000 * 120.00511 * 359.97438 * 18 17 15
35 35 H 1.07999 * 120.43438 * 0.02562 * 20 19 18
36 36 H 1.08000 * 120.73697 * 180.23625 * 21 20 19
37 37 H 1.08001 * 120.34135 * 179.76572 * 22 21 20
38 38 H 1.08004 * 119.96372 * 179.70276 * 26 13 12
39 39 H 1.07998 * 120.03412 * 180.26808 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.1033 1.6964 -1.2125
5 1 1.2846 2.7465 -0.0006
6 1 3.1034 1.6964 1.2125
7 6 2.0088 -1.2008 0.0005
8 1 3.0888 -1.2008 0.0010
9 8 1.3347 -2.3685 0.0005
10 6 2.0699 -3.5045 0.1078
11 6 3.4572 -3.4394 0.0953
12 6 4.2023 -4.5971 0.2040
13 6 3.5685 -5.8204 0.3247
14 6 4.3847 -7.0817 0.4426
15 6 4.6632 -7.3659 1.8961
16 8 4.2408 -6.6177 2.7520
17 7 5.3816 -8.4516 2.2448
18 7 5.6409 -8.7155 3.5961
19 6 6.3822 -9.8350 3.9557
20 6 6.6408 -10.0880 5.2990
21 6 7.3757 -11.2081 5.6439
22 6 7.8381 -12.0356 4.6298
23 6 7.5488 -11.7217 3.3154
24 17 8.1241 -12.7512 2.0415
25 7 6.8400 -10.6482 3.0164
26 6 2.1872 -5.8891 0.3317
27 6 1.4365 -4.7345 0.2295
28 1 -0.4850 0.8401 -0.0004
29 1 3.9526 -2.4845 0.0006
30 1 5.2812 -4.5471 0.1948
31 1 3.8311 -7.9145 0.0091
32 1 5.3274 -6.9556 -0.0901
33 1 5.7191 -9.0503 1.5603
34 1 5.3037 -8.1167 4.2807
35 1 6.2691 -9.4209 6.0627
36 1 7.5885 -11.4315 6.6789
37 1 8.4178 -12.9158 4.8655
38 1 1.6952 -6.8463 0.4213
39 1 0.3579 -4.7884 0.2394
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000817011574.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:09
Heat of formation + Delta-G solvation = 34.659548 kcal
Electronic energy + Delta-G solvation = -25484.882746 eV
Core-core repulsion = 21420.748798 eV
Total energy + Delta-G solvation = -4064.133948 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.85789 -39.82898 -38.82780 -37.20601 -36.65905 -35.93951 -32.94775 -32.78458
-32.35214 -31.27400 -30.14984 -28.98653 -26.51780 -25.11348 -24.13269 -23.31430
-21.97309 -21.50355 -20.35595 -18.87007 -18.00721 -17.95762 -17.00046 -16.92103
-16.31467 -16.03416 -15.67740 -15.12351 -15.07328 -14.68699 -14.47118 -14.31598
-13.91230 -13.78797 -13.59114 -13.38866 -12.96542 -12.69628 -12.62250 -12.50984
-11.93130 -11.72611 -11.62647 -11.47390 -11.26157 -10.87519 -10.77058 -10.63926
-10.43156 -10.39049 -10.23002 -9.98704 -9.64302 -9.32210 -8.81164 -8.14761
-7.84768 -7.17189 -6.43633 -4.02246 0.56094 0.83199 1.32550 1.62041
2.25881 2.34919 2.57866 3.14025 3.15550 3.18126 3.25320 3.54209
3.98056 4.25608 4.41974 4.48326 4.66835 4.76168 4.85464 4.97581
5.09164 5.21343 5.25741 5.31804 5.38282 5.61982 5.69022 5.72420
5.84497 5.86721 6.22181 6.36918 6.42263 6.70707 6.81285 6.91711
7.05630 7.21368 7.26095 7.36584 7.45616 7.54971 7.83950 8.01415
8.22135 9.01846 9.71982 10.74264
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.024929 B = 0.001665 C = 0.001632
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1122.909855 B =16807.861322 C =17151.858365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.863 5.863
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.270 1.270
7 C -0.392 4.392
8 H 0.092 0.908
9 O -0.177 6.177
10 C 0.158 3.842
11 C -0.233 4.233
12 C -0.054 4.054
13 C -0.174 4.174
14 C -0.066 4.066
15 C 0.509 3.491
16 O -0.522 6.522
17 N -0.527 5.527
18 N -0.513 5.513
19 C 0.427 3.573
20 C -0.230 4.230
21 C -0.013 4.013
22 C -0.219 4.219
23 C 0.231 3.769
24 Cl -0.031 7.031
25 N -0.548 5.548
26 C -0.057 4.057
27 C -0.192 4.192
28 H 0.270 0.730
29 H 0.127 0.873
30 H 0.105 0.895
31 H 0.098 0.902
32 H 0.098 0.902
33 H 0.430 0.570
34 H 0.444 0.556
35 H 0.143 0.857
36 H 0.148 0.852
37 H 0.143 0.857
38 H 0.109 0.891
39 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.474 -24.619 7.930 30.665
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.497 5.497
2 C -0.165 4.165
3 Si 0.766 3.234
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.195 1.195
7 C -0.468 4.468
8 H 0.109 0.891
9 O -0.080 6.080
10 C 0.104 3.896
11 C -0.252 4.252
12 C -0.072 4.072
13 C -0.175 4.175
14 C -0.108 4.108
15 C 0.295 3.705
16 O -0.395 6.395
17 N -0.277 5.277
18 N -0.240 5.240
19 C 0.189 3.811
20 C -0.256 4.256
21 C -0.039 4.039
22 C -0.244 4.244
23 C 0.067 3.933
24 Cl -0.003 7.003
25 N -0.270 5.270
26 C -0.076 4.076
27 C -0.211 4.211
28 H 0.080 0.920
29 H 0.145 0.855
30 H 0.123 0.877
31 H 0.117 0.883
32 H 0.116 0.884
33 H 0.272 0.728
34 H 0.289 0.711
35 H 0.161 0.839
36 H 0.165 0.835
37 H 0.161 0.839
38 H 0.127 0.873
39 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 15.511 -23.641 7.348 29.214
hybrid contribution 0.798 0.483 0.684 1.157
sum 16.309 -23.158 8.032 29.441
Atomic orbital electron populations
1.70031 1.05951 1.27768 1.45978 1.25292 0.95851 0.98836 0.96550
0.85781 0.78698 0.79766 0.79182 1.19503 1.20277 1.19502 1.21285
0.91787 0.80831 1.52883 0.89102 1.83973 1.34393 1.11477 1.78156
1.19394 0.90302 0.88034 0.91861 1.21104 0.93800 0.98774 1.11562
1.20519 0.98088 0.91731 0.96898 1.18550 0.93144 0.92483 1.13355
1.20315 1.01753 0.98536 0.90154 1.21524 0.77096 0.78856 0.92982
1.90768 1.50247 1.46758 1.51678 1.45208 1.57102 1.28877 0.96478
1.43302 1.57039 1.25566 0.98128 1.17928 0.88796 0.85720 0.88616
1.21281 1.07573 1.02296 0.94440 1.21277 0.91623 0.91185 0.99822
1.21517 1.07812 1.04219 0.90837 1.21178 0.93766 0.90182 0.88211
1.98422 1.86010 1.63492 1.52360 1.66146 1.17113 1.06459 1.37287
1.20410 0.92703 0.96773 0.97678 1.20156 0.99527 0.90255 1.11182
0.91975 0.85545 0.87737 0.88346 0.88385 0.72832 0.71056 0.83904
0.83478 0.83888 0.87292 0.86491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16
2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16
3 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16
4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16
7 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16
8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16
9 O -0.18 -5.13 9.76 0.07 0.00 -5.13 16
10 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16
11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16
12 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16
13 C -0.17 -2.95 4.38 -104.58 -0.46 -3.41 16
14 C -0.07 -0.79 5.83 -29.04 -0.17 -0.96 16
15 C 0.51 6.78 7.94 -10.99 -0.09 6.70 16
16 O -0.52 -9.26 15.87 5.56 0.09 -9.17 16
17 N -0.53 -5.66 6.29 31.22 0.20 -5.46 16
18 N -0.51 -5.20 6.42 31.12 0.20 -5.00 16
19 C 0.43 3.96 7.59 -155.02 -1.18 2.78 16
20 C -0.23 -1.54 9.94 -39.22 -0.39 -1.93 16
21 C -0.01 -0.07 10.16 -39.33 -0.40 -0.47 16
22 C -0.22 -1.39 9.87 -39.38 -0.39 -1.78 16
23 C 0.23 1.99 7.27 -17.46 -0.13 1.86 16
24 Cl -0.03 -0.25 29.10 -51.86 -1.51 -1.76 16
25 N -0.55 -5.46 9.35 -9.55 -0.09 -5.55 16
26 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16
27 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16
28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
29 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16
30 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16
31 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16
32 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16
33 H 0.43 3.93 7.95 -182.60 -1.45 2.47 16
34 H 0.44 4.36 7.99 -182.60 -1.46 2.91 16
35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16
36 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16
37 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16
38 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16
39 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16
LS Contribution 364.09 15.07 5.49 5.49
Total: -1.00 -34.75 364.09 -10.67 -45.42
By element:
Atomic # 1 Polarization: 12.52 SS G_CDS: -5.99 Total: 6.52 kcal
Atomic # 6 Polarization: -11.52 SS G_CDS: -4.78 Total: -16.30 kcal
Atomic # 7 Polarization: -41.86 SS G_CDS: 1.07 Total: -40.79 kcal
Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -34.75 -10.67 -45.42 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000817011574.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.076 kcal
(2) G-P(sol) polarization free energy of solvation -34.752 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds