Wall clock time and date at job start Wed Apr 1 2020 04:42:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31556 * 1
3 3 Si 1.86800 * 120.00197 * 2 1
4 4 H 1.48500 * 109.47268 * 240.00272 * 3 2 1
5 5 H 1.48504 * 109.46929 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47219 * 120.00005 * 3 2 1
7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1
9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1
10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2
11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7
12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9
13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10
14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12
16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13
17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13
18 18 N 1.40101 * 119.99840 * 179.97438 * 17 15 14
19 19 C 1.39003 * 119.99714 * 180.02562 * 18 17 15
20 20 C 1.39110 * 119.69639 * 179.72654 * 19 18 17
21 21 C 1.38338 * 119.12715 * 179.76721 * 20 19 18
22 22 C 1.38815 * 118.51915 * 0.49170 * 21 20 19
23 23 C 1.38199 * 119.32188 * 359.75275 * 22 21 20
24 24 Cl 1.73594 * 119.59363 * 179.97438 * 23 22 21
25 25 N 1.32068 * 120.81667 * 359.97438 * 23 22 21
26 26 C 1.38300 * 120.13476 * 0.25178 * 13 12 11
27 27 C 1.38103 * 120.07235 * 359.45128 * 26 13 12
28 28 H 0.97002 * 119.99992 * 0.02562 * 1 2 3
29 29 H 1.07996 * 120.03050 * 0.02562 * 11 10 9
30 30 H 1.08003 * 119.96708 * 180.02562 * 12 11 10
31 31 H 1.08999 * 109.46626 * 209.99947 * 14 13 12
32 32 H 1.09004 * 109.47318 * 329.99490 * 14 13 12
33 33 H 0.96999 * 120.00482 * 359.97438 * 17 15 14
34 34 H 0.97000 * 120.00511 * 359.97438 * 18 17 15
35 35 H 1.07999 * 120.43438 * 0.02562 * 20 19 18
36 36 H 1.08000 * 120.73697 * 180.23625 * 21 20 19
37 37 H 1.08001 * 120.34135 * 179.76572 * 22 21 20
38 38 H 1.08004 * 119.96372 * 179.70276 * 26 13 12
39 39 H 1.07998 * 120.03412 * 180.26808 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.1033 1.6964 -1.2125
5 1 1.2846 2.7465 -0.0006
6 1 3.1034 1.6964 1.2125
7 6 2.0088 -1.2008 0.0005
8 1 3.0888 -1.2008 0.0010
9 8 1.3347 -2.3685 0.0005
10 6 2.0699 -3.5045 0.1078
11 6 3.4572 -3.4394 0.0953
12 6 4.2023 -4.5971 0.2040
13 6 3.5685 -5.8204 0.3247
14 6 4.3847 -7.0817 0.4426
15 6 4.6632 -7.3659 1.8961
16 8 4.2408 -6.6177 2.7520
17 7 5.3816 -8.4516 2.2448
18 7 5.6409 -8.7155 3.5961
19 6 6.3822 -9.8350 3.9557
20 6 6.6408 -10.0880 5.2990
21 6 7.3757 -11.2081 5.6439
22 6 7.8381 -12.0356 4.6298
23 6 7.5488 -11.7217 3.3154
24 17 8.1241 -12.7512 2.0415
25 7 6.8400 -10.6482 3.0164
26 6 2.1872 -5.8891 0.3317
27 6 1.4365 -4.7345 0.2295
28 1 -0.4850 0.8401 -0.0004
29 1 3.9526 -2.4845 0.0006
30 1 5.2812 -4.5471 0.1948
31 1 3.8311 -7.9145 0.0091
32 1 5.3274 -6.9556 -0.0901
33 1 5.7191 -9.0503 1.5603
34 1 5.3037 -8.1167 4.2807
35 1 6.2691 -9.4209 6.0627
36 1 7.5885 -11.4315 6.6789
37 1 8.4178 -12.9158 4.8655
38 1 1.6952 -6.8463 0.4213
39 1 0.3579 -4.7884 0.2394
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000817011574.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:08
Heat of formation + Delta-G solvation = 11.618005 kcal
Electronic energy + Delta-G solvation = -25485.881902 eV
Core-core repulsion = 21420.748798 eV
Total energy + Delta-G solvation = -4065.133104 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.53657 -40.98771 -40.36084 -38.32691 -37.73923 -36.84797 -34.41476 -33.65028
-33.44157 -32.52877 -31.77671 -29.80411 -28.00553 -26.90083 -24.71889 -23.96096
-23.63803 -22.72512 -21.62190 -19.86639 -19.61195 -18.82044 -18.79130 -17.70305
-16.86485 -16.80028 -16.74310 -16.38589 -16.16555 -15.97877 -15.70314 -15.63484
-15.50209 -15.16337 -14.82672 -14.41652 -14.22124 -14.16028 -13.66948 -13.52551
-13.06671 -12.96550 -12.84496 -12.48189 -12.34287 -12.30635 -12.27716 -12.24222
-12.14439 -11.19704 -11.17709 -10.94847 -10.79811 -10.73812 -10.33285 -9.76308
-8.91863 -8.56362 -8.47373 -6.15636 0.01818 0.30751 0.55591 0.61846
0.77158 1.02955 1.33714 1.45139 1.50358 1.58684 2.17555 2.69386
2.73258 2.89620 3.16512 3.51975 3.72153 3.81215 3.90138 4.02560
4.05044 4.19258 4.23380 4.34845 4.45540 4.46461 4.59616 4.68894
4.80199 4.95529 5.08016 5.14271 5.22040 5.29462 5.33927 5.55708
5.70895 5.71943 5.76627 6.02619 6.05880 6.22584 6.44852 6.85205
6.96969 7.31507 7.78156 8.75710
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.024929 B = 0.001665 C = 0.001632
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1122.909855 B =16807.861322 C =17151.858365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.024 4.024
3 Si 1.019 2.981
4 H -0.255 1.255
5 H -0.270 1.270
6 H -0.260 1.260
7 C -0.415 4.415
8 H 0.100 0.900
9 O -0.233 6.233
10 C 0.113 3.887
11 C -0.245 4.245
12 C -0.057 4.057
13 C -0.146 4.146
14 C -0.065 4.065
15 C 0.512 3.488
16 O -0.575 6.575
17 N -0.513 5.513
18 N -0.523 5.523
19 C 0.406 3.594
20 C -0.227 4.227
21 C -0.007 4.007
22 C -0.211 4.211
23 C 0.206 3.794
24 Cl -0.034 7.034
25 N -0.569 5.569
26 C -0.055 4.055
27 C -0.207 4.207
28 H 0.273 0.727
29 H 0.118 0.882
30 H 0.139 0.861
31 H 0.136 0.864
32 H 0.134 0.866
33 H 0.438 0.562
34 H 0.443 0.557
35 H 0.163 0.837
36 H 0.185 0.815
37 H 0.166 0.834
38 H 0.148 0.852
39 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.665 -27.527 8.939 34.991
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.222 4.222
3 Si 0.838 3.162
4 H -0.180 1.180
5 H -0.195 1.195
6 H -0.184 1.184
7 C -0.491 4.491
8 H 0.118 0.882
9 O -0.140 6.140
10 C 0.063 3.937
11 C -0.264 4.264
12 C -0.075 4.075
13 C -0.148 4.148
14 C -0.106 4.106
15 C 0.300 3.700
16 O -0.452 6.452
17 N -0.260 5.260
18 N -0.253 5.253
19 C 0.170 3.830
20 C -0.253 4.253
21 C -0.033 4.033
22 C -0.235 4.235
23 C 0.043 3.957
24 Cl -0.006 7.006
25 N -0.291 5.291
26 C -0.073 4.073
27 C -0.226 4.226
28 H 0.082 0.918
29 H 0.135 0.865
30 H 0.157 0.843
31 H 0.154 0.846
32 H 0.152 0.848
33 H 0.282 0.718
34 H 0.288 0.712
35 H 0.180 0.820
36 H 0.202 0.798
37 H 0.183 0.817
38 H 0.166 0.834
39 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 18.779 -26.676 8.343 33.673
hybrid contribution 0.014 0.875 0.472 0.994
sum 18.793 -25.801 8.815 33.114
Atomic orbital electron populations
1.70182 1.08007 1.28847 1.48853 1.26616 0.96900 1.02773 0.95870
0.84644 0.77397 0.74228 0.79904 1.17955 1.19480 1.18404 1.21781
0.92489 0.81497 1.53309 0.88227 1.83935 1.35985 1.12607 1.81450
1.19956 0.91679 0.87975 0.94070 1.21230 0.93105 1.00043 1.12030
1.20946 0.99762 0.91076 0.95756 1.19140 0.93245 0.94197 1.08170
1.20432 1.03171 0.96904 0.90092 1.21511 0.76826 0.78810 0.92875
1.90771 1.52712 1.48663 1.53040 1.44941 1.55667 1.27969 0.97451
1.43379 1.58139 1.26314 0.97456 1.18202 0.89555 0.85709 0.89574
1.21633 1.06918 1.02876 0.93833 1.21754 0.90172 0.89980 1.01388
1.21896 1.06757 1.04710 0.90095 1.21461 0.94745 0.90412 0.89130
1.98416 1.86043 1.63442 1.52693 1.66025 1.17754 1.07125 1.38173
1.20888 0.93466 0.96981 0.95943 1.20442 0.99925 0.90675 1.11583
0.91836 0.86457 0.84284 0.84574 0.84811 0.71798 0.71158 0.81984
0.79801 0.81651 0.83444 0.86986
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16
2 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16
3 Si 1.02 43.96 29.55 68.60 2.03 45.98 16
4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16
5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16
6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
7 C -0.41 -24.95 9.49 67.92 0.64 -24.31 16
8 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16
9 O -0.23 -14.56 9.76 -22.66 -0.22 -14.78 16
10 C 0.11 5.91 6.65 22.58 0.15 6.06 16
11 C -0.24 -11.15 9.17 22.39 0.21 -10.95 16
12 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16
13 C -0.15 -4.54 4.38 -19.83 -0.09 -4.63 16
14 C -0.07 -1.26 5.83 29.10 0.17 -1.09 16
15 C 0.51 12.12 7.94 87.66 0.70 12.82 16
16 O -0.57 -19.45 15.87 -3.03 -0.05 -19.50 16
17 N -0.51 -9.62 6.29 -173.54 -1.09 -10.71 16
18 N -0.52 -9.64 6.42 -55.44 -0.36 -9.99 16
19 C 0.41 6.65 7.59 133.05 1.01 7.66 16
20 C -0.23 -2.39 9.94 22.50 0.22 -2.16 16
21 C -0.01 -0.05 10.16 22.43 0.23 0.18 16
22 C -0.21 -2.00 9.87 22.40 0.22 -1.78 16
23 C 0.21 3.10 7.27 84.65 0.62 3.72 16
24 Cl -0.03 -0.49 29.10 -2.72 -0.08 -0.56 16
25 N -0.57 -10.18 9.35 -184.14 -1.72 -11.91 16
26 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16
27 C -0.21 -9.24 9.99 22.39 0.22 -9.01 16
28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
29 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16
30 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16
31 H 0.14 1.73 8.08 -2.39 -0.02 1.71 16
32 H 0.13 1.76 8.08 -2.38 -0.02 1.74 16
33 H 0.44 6.66 7.95 -213.32 -1.70 4.96 16
34 H 0.44 8.15 7.99 -213.32 -1.71 6.45 16
35 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16
36 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16
37 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16
38 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16
39 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16
Total: -1.00 -83.56 364.09 1.74 -81.82
By element:
Atomic # 1 Polarization: 27.39 SS G_CDS: -2.26 Total: 25.12 kcal
Atomic # 6 Polarization: -33.14 SS G_CDS: 5.20 Total: -27.95 kcal
Atomic # 7 Polarization: -87.27 SS G_CDS: -2.87 Total: -90.14 kcal
Atomic # 8 Polarization: -34.01 SS G_CDS: -0.27 Total: -34.28 kcal
Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal
Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.56 kcal
Total: -83.56 1.74 -81.82 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000817011574.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.439 kcal
(2) G-P(sol) polarization free energy of solvation -83.563 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds