Wall clock time and date at job start Wed Apr 1 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48500 * 109.47268 * 240.00272 * 3 2 1 5 5 H 1.48504 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47219 * 120.00005 * 3 2 1 7 7 C 1.38655 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 N 1.40101 * 119.99840 * 179.97438 * 17 15 14 19 19 C 1.39003 * 119.99714 * 180.02562 * 18 17 15 20 20 C 1.39110 * 119.69639 * 179.72654 * 19 18 17 21 21 C 1.38338 * 119.12715 * 179.76721 * 20 19 18 22 22 C 1.38815 * 118.51915 * 0.49170 * 21 20 19 23 23 C 1.38199 * 119.32188 * 359.75275 * 22 21 20 24 24 Cl 1.73594 * 119.59363 * 179.97438 * 23 22 21 25 25 N 1.32068 * 120.81667 * 359.97438 * 23 22 21 26 26 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 27 27 C 1.38103 * 120.07235 * 359.45128 * 26 13 12 28 28 H 0.97002 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 32 32 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 33 33 H 0.96999 * 120.00482 * 359.97438 * 17 15 14 34 34 H 0.97000 * 120.00511 * 359.97438 * 18 17 15 35 35 H 1.07999 * 120.43438 * 0.02562 * 20 19 18 36 36 H 1.08000 * 120.73697 * 180.23625 * 21 20 19 37 37 H 1.08001 * 120.34135 * 179.76572 * 22 21 20 38 38 H 1.08004 * 119.96372 * 179.70276 * 26 13 12 39 39 H 1.07998 * 120.03412 * 180.26808 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1078 11 6 3.4572 -3.4394 0.0953 12 6 4.2023 -4.5971 0.2040 13 6 3.5685 -5.8204 0.3247 14 6 4.3847 -7.0817 0.4426 15 6 4.6632 -7.3659 1.8961 16 8 4.2408 -6.6177 2.7520 17 7 5.3816 -8.4516 2.2448 18 7 5.6409 -8.7155 3.5961 19 6 6.3822 -9.8350 3.9557 20 6 6.6408 -10.0880 5.2990 21 6 7.3757 -11.2081 5.6439 22 6 7.8381 -12.0356 4.6298 23 6 7.5488 -11.7217 3.3154 24 17 8.1241 -12.7512 2.0415 25 7 6.8400 -10.6482 3.0164 26 6 2.1872 -5.8891 0.3317 27 6 1.4365 -4.7345 0.2295 28 1 -0.4850 0.8401 -0.0004 29 1 3.9526 -2.4845 0.0006 30 1 5.2812 -4.5471 0.1948 31 1 3.8311 -7.9145 0.0091 32 1 5.3274 -6.9556 -0.0901 33 1 5.7191 -9.0503 1.5603 34 1 5.3037 -8.1167 4.2807 35 1 6.2691 -9.4209 6.0627 36 1 7.5885 -11.4315 6.6789 37 1 8.4178 -12.9158 4.8655 38 1 1.6952 -6.8463 0.4213 39 1 0.3579 -4.7884 0.2394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817011574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:08 Heat of formation + Delta-G solvation = 11.618005 kcal Electronic energy + Delta-G solvation = -25485.881902 eV Core-core repulsion = 21420.748798 eV Total energy + Delta-G solvation = -4065.133104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53657 -40.98771 -40.36084 -38.32691 -37.73923 -36.84797 -34.41476 -33.65028 -33.44157 -32.52877 -31.77671 -29.80411 -28.00553 -26.90083 -24.71889 -23.96096 -23.63803 -22.72512 -21.62190 -19.86639 -19.61195 -18.82044 -18.79130 -17.70305 -16.86485 -16.80028 -16.74310 -16.38589 -16.16555 -15.97877 -15.70314 -15.63484 -15.50209 -15.16337 -14.82672 -14.41652 -14.22124 -14.16028 -13.66948 -13.52551 -13.06671 -12.96550 -12.84496 -12.48189 -12.34287 -12.30635 -12.27716 -12.24222 -12.14439 -11.19704 -11.17709 -10.94847 -10.79811 -10.73812 -10.33285 -9.76308 -8.91863 -8.56362 -8.47373 -6.15636 0.01818 0.30751 0.55591 0.61846 0.77158 1.02955 1.33714 1.45139 1.50358 1.58684 2.17555 2.69386 2.73258 2.89620 3.16512 3.51975 3.72153 3.81215 3.90138 4.02560 4.05044 4.19258 4.23380 4.34845 4.45540 4.46461 4.59616 4.68894 4.80199 4.95529 5.08016 5.14271 5.22040 5.29462 5.33927 5.55708 5.70895 5.71943 5.76627 6.02619 6.05880 6.22584 6.44852 6.85205 6.96969 7.31507 7.78156 8.75710 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.001665 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.909855 B =16807.861322 C =17151.858365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.245 4.245 12 C -0.057 4.057 13 C -0.146 4.146 14 C -0.065 4.065 15 C 0.512 3.488 16 O -0.575 6.575 17 N -0.513 5.513 18 N -0.523 5.523 19 C 0.406 3.594 20 C -0.227 4.227 21 C -0.007 4.007 22 C -0.211 4.211 23 C 0.206 3.794 24 Cl -0.034 7.034 25 N -0.569 5.569 26 C -0.055 4.055 27 C -0.207 4.207 28 H 0.273 0.727 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.438 0.562 34 H 0.443 0.557 35 H 0.163 0.837 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.148 0.852 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.665 -27.527 8.939 34.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.264 4.264 12 C -0.075 4.075 13 C -0.148 4.148 14 C -0.106 4.106 15 C 0.300 3.700 16 O -0.452 6.452 17 N -0.260 5.260 18 N -0.253 5.253 19 C 0.170 3.830 20 C -0.253 4.253 21 C -0.033 4.033 22 C -0.235 4.235 23 C 0.043 3.957 24 Cl -0.006 7.006 25 N -0.291 5.291 26 C -0.073 4.073 27 C -0.226 4.226 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.282 0.718 34 H 0.288 0.712 35 H 0.180 0.820 36 H 0.202 0.798 37 H 0.183 0.817 38 H 0.166 0.834 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.779 -26.676 8.343 33.673 hybrid contribution 0.014 0.875 0.472 0.994 sum 18.793 -25.801 8.815 33.114 Atomic orbital electron populations 1.70182 1.08007 1.28847 1.48853 1.26616 0.96900 1.02773 0.95870 0.84644 0.77397 0.74228 0.79904 1.17955 1.19480 1.18404 1.21781 0.92489 0.81497 1.53309 0.88227 1.83935 1.35985 1.12607 1.81450 1.19956 0.91679 0.87975 0.94070 1.21230 0.93105 1.00043 1.12030 1.20946 0.99762 0.91076 0.95756 1.19140 0.93245 0.94197 1.08170 1.20432 1.03171 0.96904 0.90092 1.21511 0.76826 0.78810 0.92875 1.90771 1.52712 1.48663 1.53040 1.44941 1.55667 1.27969 0.97451 1.43379 1.58139 1.26314 0.97456 1.18202 0.89555 0.85709 0.89574 1.21633 1.06918 1.02876 0.93833 1.21754 0.90172 0.89980 1.01388 1.21896 1.06757 1.04710 0.90095 1.21461 0.94745 0.90412 0.89130 1.98416 1.86043 1.63442 1.52693 1.66025 1.17754 1.07125 1.38173 1.20888 0.93466 0.96981 0.95943 1.20442 0.99925 0.90675 1.11583 0.91836 0.86457 0.84284 0.84574 0.84811 0.71798 0.71158 0.81984 0.79801 0.81651 0.83444 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16 2 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 3 Si 1.02 43.96 29.55 68.60 2.03 45.98 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.41 -24.95 9.49 67.92 0.64 -24.31 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 9 O -0.23 -14.56 9.76 -22.66 -0.22 -14.78 16 10 C 0.11 5.91 6.65 22.58 0.15 6.06 16 11 C -0.24 -11.15 9.17 22.39 0.21 -10.95 16 12 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 13 C -0.15 -4.54 4.38 -19.83 -0.09 -4.63 16 14 C -0.07 -1.26 5.83 29.10 0.17 -1.09 16 15 C 0.51 12.12 7.94 87.66 0.70 12.82 16 16 O -0.57 -19.45 15.87 -3.03 -0.05 -19.50 16 17 N -0.51 -9.62 6.29 -173.54 -1.09 -10.71 16 18 N -0.52 -9.64 6.42 -55.44 -0.36 -9.99 16 19 C 0.41 6.65 7.59 133.05 1.01 7.66 16 20 C -0.23 -2.39 9.94 22.50 0.22 -2.16 16 21 C -0.01 -0.05 10.16 22.43 0.23 0.18 16 22 C -0.21 -2.00 9.87 22.40 0.22 -1.78 16 23 C 0.21 3.10 7.27 84.65 0.62 3.72 16 24 Cl -0.03 -0.49 29.10 -2.72 -0.08 -0.56 16 25 N -0.57 -10.18 9.35 -184.14 -1.72 -11.91 16 26 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16 27 C -0.21 -9.24 9.99 22.39 0.22 -9.01 16 28 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.14 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.13 1.76 8.08 -2.38 -0.02 1.74 16 33 H 0.44 6.66 7.95 -213.32 -1.70 4.96 16 34 H 0.44 8.15 7.99 -213.32 -1.71 6.45 16 35 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 37 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -83.56 364.09 1.74 -81.82 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -2.26 Total: 25.12 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 5.20 Total: -27.95 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -2.87 Total: -90.14 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.27 Total: -34.28 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.56 kcal Total: -83.56 1.74 -81.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817011574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.439 kcal (2) G-P(sol) polarization free energy of solvation -83.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds