Wall clock time and date at job start Wed Apr 1 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99647 * 2 1 4 4 H 1.48500 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46755 * 299.99544 * 3 2 1 6 6 H 1.48493 * 109.47091 * 59.99861 * 3 2 1 7 7 C 1.37876 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00157 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.63806 * 298.29799 * 9 7 2 11 11 C 1.54598 * 110.72565 * 61.45010 * 9 7 2 12 12 C 1.53987 * 105.13729 * 140.49255 * 11 9 7 13 13 N 1.47901 * 107.22952 * 1.12978 * 12 11 9 14 14 C 1.39670 * 110.99748 * 214.25591 * 13 12 11 15 15 C 1.38931 * 120.08072 * 66.17735 * 14 13 12 16 16 C 1.38081 * 119.92897 * 179.97438 * 15 14 13 17 17 C 1.38309 * 120.07055 * 359.97438 * 16 15 14 18 18 C 1.38254 * 120.15483 * 0.02562 * 17 16 15 19 19 C 1.38133 * 120.07381 * 359.74839 * 18 17 16 20 20 S 1.76203 * 120.03980 * 180.27529 * 19 18 17 21 21 O 1.42106 * 104.27352 * 228.48612 * 20 19 18 22 22 O 1.42099 * 104.27699 * 356.33912 * 20 19 18 23 23 C 1.81400 * 104.45065 * 112.41128 * 20 19 18 24 24 F 1.39899 * 109.47040 * 305.49912 * 23 20 19 25 25 F 1.39897 * 109.46709 * 65.49927 * 23 20 19 26 26 C 1.48812 * 105.67640 * 334.89908 * 13 12 11 27 27 H 0.96995 * 120.00504 * 0.02562 * 1 2 3 28 28 H 0.96704 * 114.00476 * 61.70288 * 10 9 7 29 29 H 1.09003 * 110.30238 * 21.57337 * 11 9 7 30 30 H 1.09000 * 110.38949 * 259.45444 * 11 9 7 31 31 H 1.09005 * 109.91400 * 120.58104 * 12 11 9 32 32 H 1.08997 * 109.91798 * 241.66797 * 12 11 9 33 33 H 1.07997 * 120.03387 * 359.95414 * 15 14 13 34 34 H 1.07995 * 119.96497 * 180.02562 * 16 15 14 35 35 H 1.08004 * 119.91697 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.96656 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47069 * 185.49647 * 23 20 19 38 38 H 1.08998 * 110.52313 * 280.54489 * 26 13 12 39 39 H 1.09002 * 110.84082 * 157.56091 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4498 -2.6182 1.1777 11 6 0.3795 -2.6278 -1.2699 12 6 0.5040 -4.1025 -1.6953 13 7 1.3730 -4.7726 -0.7038 14 6 2.1515 -5.7622 -1.3084 15 6 3.1284 -5.4122 -2.2321 16 6 3.8966 -6.3931 -2.8275 17 6 3.6946 -7.7227 -2.5048 18 6 2.7233 -8.0746 -1.5860 19 6 1.9545 -7.0981 -0.9831 20 16 0.7218 -7.5471 0.1931 21 8 -0.4356 -6.8353 -0.2233 22 8 0.7450 -8.9678 0.2001 23 6 1.3393 -6.8926 1.7682 24 9 2.6310 -7.3773 2.0002 25 9 1.3685 -5.4950 1.7130 26 6 2.2242 -3.6984 -0.1240 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2285 -1.9342 1.2627 29 1 0.7578 -1.9740 -2.0558 30 1 -0.6589 -2.3854 -1.0442 31 1 -0.4802 -4.5710 -1.7032 32 1 0.9532 -4.1664 -2.6863 33 1 3.2866 -4.3741 -2.4844 34 1 4.6564 -6.1216 -3.5453 35 1 4.2971 -8.4879 -2.9717 36 1 2.5679 -9.1139 -1.3366 37 1 0.6812 -7.2106 2.5768 38 1 3.0471 -3.4579 -0.7970 39 1 2.6027 -3.9900 0.8557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:15 Heat of formation + Delta-G solvation = -145.069322 kcal Electronic energy + Delta-G solvation = -30643.700024 eV Core-core repulsion = 26123.126967 eV Total energy + Delta-G solvation = -4520.573057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.97433 -47.06468 -40.05962 -37.77407 -37.16275 -36.10544 -34.76464 -32.12785 -31.47207 -30.94769 -28.14833 -27.91234 -27.37706 -24.78125 -23.33808 -22.48923 -20.26326 -19.69341 -19.37529 -18.42500 -18.04200 -17.41066 -17.31942 -16.84212 -16.17376 -15.89111 -15.12648 -14.88658 -14.83323 -14.49307 -14.24026 -14.15466 -13.83249 -13.69798 -13.39664 -13.28947 -12.88992 -12.62083 -12.49674 -12.30332 -12.22535 -12.08754 -11.93842 -11.67519 -11.38357 -11.30569 -11.06255 -10.94470 -10.68445 -10.48500 -10.42477 -10.36282 -9.89376 -9.41713 -9.23586 -8.72449 -8.60188 -8.18425 -8.02245 -6.23612 -4.32255 -0.40800 0.80627 1.23791 2.45550 3.18667 3.24758 3.27991 3.31216 3.56467 3.80107 3.91255 4.16162 4.26076 4.32763 4.61910 4.85462 4.90791 5.04186 5.09376 5.32811 5.49226 5.65063 5.80053 5.82064 5.87673 6.02293 6.12435 6.21303 6.29834 6.40737 6.54063 6.74750 6.83597 6.98938 7.21397 7.43851 7.48505 7.61696 7.78696 8.13140 8.70182 9.37041 9.56123 10.83280 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.004441 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.681631 B = 6303.193463 C = 6972.831689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.261 3.739 10 O -0.574 6.574 11 C -0.129 4.129 12 C 0.046 3.954 13 N -0.499 5.499 14 C 0.206 3.794 15 C -0.173 4.173 16 C -0.050 4.050 17 C -0.156 4.156 18 C -0.014 4.014 19 C -0.644 4.644 20 S 2.486 3.514 21 O -0.870 6.870 22 O -0.920 6.920 23 C -0.206 4.206 24 F -0.176 7.176 25 F -0.123 7.123 26 C 0.053 3.947 27 H 0.266 0.734 28 H 0.377 0.623 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.054 0.946 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -14.443 -2.664 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.221 3.779 10 O -0.382 6.382 11 C -0.168 4.168 12 C -0.079 4.079 13 N -0.222 5.222 14 C 0.109 3.891 15 C -0.194 4.194 16 C -0.069 4.069 17 C -0.175 4.175 18 C -0.033 4.033 19 C -0.735 4.735 20 S 2.657 3.343 21 O -0.867 6.867 22 O -0.917 6.917 23 C -0.343 4.343 24 F -0.158 7.158 25 F -0.104 7.104 26 C -0.071 4.071 27 H 0.076 0.924 28 H 0.227 0.773 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.072 0.928 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.224 -15.474 -2.216 15.961 hybrid contribution 1.509 2.362 -0.613 2.869 sum 4.733 -13.112 -2.828 14.224 Atomic orbital electron populations 1.69738 1.05871 1.27358 1.50087 1.24976 0.94957 0.99330 0.93734 0.86444 0.80096 0.83178 0.77684 1.19766 1.20948 1.20797 1.21589 0.93527 0.90639 1.51923 0.92125 1.19266 0.86547 0.89859 0.82277 1.86162 1.51405 1.56091 1.44555 1.22982 1.02478 0.90802 1.00524 1.23058 0.96901 0.96562 0.91387 1.62724 1.18085 1.12165 1.29201 1.18892 0.89876 0.91208 0.89099 1.21935 0.98014 1.00827 0.98619 1.21380 0.96454 0.92941 0.96141 1.21194 0.99683 0.96488 1.00102 1.20888 0.91247 0.98649 0.92542 1.29851 1.22319 0.99940 1.21389 1.06561 0.76364 0.74806 0.76594 1.93666 1.43306 1.73484 1.76288 1.93584 1.86702 1.26282 1.85133 1.32790 0.89414 0.86748 1.25323 1.93038 1.38900 1.87319 1.96523 1.93371 1.96271 1.23291 1.97478 1.23551 0.94764 0.89756 0.99071 0.92356 0.77345 0.91846 0.90887 0.89883 0.94602 0.84561 0.85372 0.85149 0.83728 0.83971 0.92787 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.19 11.00 55.43 0.61 -22.58 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -13.88 8.15 -34.44 -0.28 -14.17 16 8 H 0.06 1.56 7.78 -52.49 -0.41 1.15 16 9 C 0.26 6.24 0.95 -89.91 -0.09 6.15 16 10 O -0.57 -14.58 13.09 -35.23 -0.46 -15.04 16 11 C -0.13 -2.88 5.26 -25.38 -0.13 -3.02 16 12 C 0.05 0.89 6.53 -2.76 -0.02 0.87 16 13 N -0.50 -9.48 2.13 -166.93 -0.36 -9.83 16 14 C 0.21 3.40 4.76 -83.79 -0.40 3.00 16 15 C -0.17 -2.51 8.05 -39.38 -0.32 -2.83 16 16 C -0.05 -0.58 10.04 -39.61 -0.40 -0.98 16 17 C -0.16 -1.70 10.04 -39.55 -0.40 -2.10 16 18 C -0.01 -0.17 9.50 -39.61 -0.38 -0.55 16 19 C -0.64 -9.64 5.52 -39.38 -0.22 -9.85 16 20 S 2.49 35.99 5.06 -107.50 -0.54 35.45 16 21 O -0.87 -15.06 16.91 -57.54 -0.97 -16.04 16 22 O -0.92 -13.33 16.75 -57.54 -0.96 -14.29 16 23 C -0.21 -2.84 5.96 101.05 0.60 -2.24 16 24 F -0.18 -2.48 17.28 2.25 0.04 -2.45 16 25 F -0.12 -2.22 12.89 2.25 0.03 -2.19 16 26 C 0.05 1.11 4.80 -1.74 -0.01 1.10 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.38 9.74 7.46 45.56 0.34 10.08 16 29 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 30 H 0.07 1.73 7.98 -51.93 -0.41 1.31 16 31 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 32 H 0.04 0.63 7.10 -51.93 -0.37 0.26 16 33 H 0.14 1.97 6.96 -52.49 -0.37 1.60 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.15 1.53 7.22 -52.49 -0.38 1.15 16 37 H 0.14 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.05 1.07 6.18 -51.93 -0.32 0.74 16 39 H 0.09 1.83 6.52 -51.93 -0.34 1.49 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -30.46 336.49 -8.18 -38.64 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.49 Total: 10.95 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.12 Total: -22.82 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.25 Total: -32.41 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -2.40 Total: -45.37 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 35.99 SS G_CDS: -0.54 Total: 35.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.46 -8.18 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.430 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds