Wall clock time and date at job start Wed Apr 1 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99647 * 2 1 4 4 H 1.48500 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46755 * 299.99544 * 3 2 1 6 6 H 1.48493 * 109.47091 * 59.99861 * 3 2 1 7 7 C 1.37876 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99673 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00157 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.63806 * 298.29799 * 9 7 2 11 11 C 1.54598 * 110.72565 * 61.45010 * 9 7 2 12 12 C 1.53987 * 105.13729 * 140.49255 * 11 9 7 13 13 N 1.47901 * 107.22952 * 1.12978 * 12 11 9 14 14 C 1.39670 * 110.99748 * 214.25591 * 13 12 11 15 15 C 1.38931 * 120.08072 * 66.17735 * 14 13 12 16 16 C 1.38081 * 119.92897 * 179.97438 * 15 14 13 17 17 C 1.38309 * 120.07055 * 359.97438 * 16 15 14 18 18 C 1.38254 * 120.15483 * 0.02562 * 17 16 15 19 19 C 1.38133 * 120.07381 * 359.74839 * 18 17 16 20 20 S 1.76203 * 120.03980 * 180.27529 * 19 18 17 21 21 O 1.42106 * 104.27352 * 228.48612 * 20 19 18 22 22 O 1.42099 * 104.27699 * 356.33912 * 20 19 18 23 23 C 1.81400 * 104.45065 * 112.41128 * 20 19 18 24 24 F 1.39899 * 109.47040 * 305.49912 * 23 20 19 25 25 F 1.39897 * 109.46709 * 65.49927 * 23 20 19 26 26 C 1.48812 * 105.67640 * 334.89908 * 13 12 11 27 27 H 0.96995 * 120.00504 * 0.02562 * 1 2 3 28 28 H 0.96704 * 114.00476 * 61.70288 * 10 9 7 29 29 H 1.09003 * 110.30238 * 21.57337 * 11 9 7 30 30 H 1.09000 * 110.38949 * 259.45444 * 11 9 7 31 31 H 1.09005 * 109.91400 * 120.58104 * 12 11 9 32 32 H 1.08997 * 109.91798 * 241.66797 * 12 11 9 33 33 H 1.07997 * 120.03387 * 359.95414 * 15 14 13 34 34 H 1.07995 * 119.96497 * 180.02562 * 16 15 14 35 35 H 1.08004 * 119.91697 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.96656 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47069 * 185.49647 * 23 20 19 38 38 H 1.08998 * 110.52313 * 280.54489 * 26 13 12 39 39 H 1.09002 * 110.84082 * 157.56091 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.4498 -2.6182 1.1777 11 6 0.3795 -2.6278 -1.2699 12 6 0.5040 -4.1025 -1.6953 13 7 1.3730 -4.7726 -0.7038 14 6 2.1515 -5.7622 -1.3084 15 6 3.1284 -5.4122 -2.2321 16 6 3.8966 -6.3931 -2.8275 17 6 3.6946 -7.7227 -2.5048 18 6 2.7233 -8.0746 -1.5860 19 6 1.9545 -7.0981 -0.9831 20 16 0.7218 -7.5471 0.1931 21 8 -0.4356 -6.8353 -0.2233 22 8 0.7450 -8.9678 0.2001 23 6 1.3393 -6.8926 1.7682 24 9 2.6310 -7.3773 2.0002 25 9 1.3685 -5.4950 1.7130 26 6 2.2242 -3.6984 -0.1240 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2285 -1.9342 1.2627 29 1 0.7578 -1.9740 -2.0558 30 1 -0.6589 -2.3854 -1.0442 31 1 -0.4802 -4.5710 -1.7032 32 1 0.9532 -4.1664 -2.6863 33 1 3.2866 -4.3741 -2.4844 34 1 4.6564 -6.1216 -3.5453 35 1 4.2971 -8.4879 -2.9717 36 1 2.5679 -9.1139 -1.3366 37 1 0.6812 -7.2106 2.5768 38 1 3.0471 -3.4579 -0.7970 39 1 2.6027 -3.9900 0.8557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826614300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:14 Heat of formation + Delta-G solvation = -166.884443 kcal Electronic energy + Delta-G solvation = -30644.645998 eV Core-core repulsion = 26123.126967 eV Total energy + Delta-G solvation = -4521.519031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.14729 -48.28252 -41.32783 -39.16156 -38.38793 -37.31049 -36.42838 -34.12427 -32.65318 -32.22915 -29.85530 -29.35687 -28.48955 -26.57882 -24.37021 -23.80229 -21.72969 -21.37363 -20.59657 -19.61797 -19.17503 -18.94028 -18.57761 -18.18486 -17.47556 -17.11183 -16.87270 -16.46383 -16.04153 -15.76293 -15.42894 -15.42579 -15.26932 -15.05461 -14.85381 -14.51711 -14.35931 -14.08403 -13.81580 -13.53654 -13.48080 -13.37805 -13.28765 -13.23409 -13.09957 -12.82119 -12.55680 -12.51007 -12.24623 -12.17824 -12.07225 -11.69570 -11.49191 -11.08750 -10.59192 -10.41181 -10.05392 -9.81118 -9.53473 -8.19297 -6.35107 -1.52599 -0.22986 0.20736 1.35026 1.39665 1.43739 1.53270 2.18519 2.38692 2.51306 2.68989 2.84644 2.94066 3.06825 3.17672 3.50917 3.85204 3.90816 4.00193 4.04665 4.26088 4.30932 4.35323 4.42422 4.53510 4.69535 4.76207 4.88217 5.05147 5.11044 5.17959 5.29451 5.34706 5.45765 5.57827 5.66548 5.74046 5.84801 6.17996 6.29108 6.70803 7.36941 7.54054 8.86191 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.004441 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.681631 B = 6303.193463 C = 6972.831689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.559 4.559 8 H 0.055 0.945 9 C 0.245 3.755 10 O -0.582 6.582 11 C -0.118 4.118 12 C 0.053 3.947 13 N -0.499 5.499 14 C 0.169 3.831 15 C -0.186 4.186 16 C -0.042 4.042 17 C -0.140 4.140 18 C -0.020 4.020 19 C -0.656 4.656 20 S 2.499 3.501 21 O -0.906 6.906 22 O -0.921 6.921 23 C -0.211 4.211 24 F -0.176 7.176 25 F -0.149 7.149 26 C 0.065 3.935 27 H 0.268 0.732 28 H 0.370 0.630 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.189 0.811 38 H 0.061 0.939 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -16.117 -3.670 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.597 4.597 8 H 0.073 0.927 9 C 0.205 3.795 10 O -0.389 6.389 11 C -0.157 4.157 12 C -0.072 4.072 13 N -0.221 5.221 14 C 0.073 3.927 15 C -0.206 4.206 16 C -0.061 4.061 17 C -0.159 4.159 18 C -0.039 4.039 19 C -0.747 4.747 20 S 2.673 3.327 21 O -0.903 6.903 22 O -0.918 6.918 23 C -0.348 4.348 24 F -0.157 7.157 25 F -0.131 7.131 26 C -0.060 4.060 27 H 0.077 0.923 28 H 0.218 0.782 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.079 0.921 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.127 -17.176 -3.232 18.214 hybrid contribution 0.986 2.762 -0.319 2.950 sum 6.113 -14.413 -3.550 16.054 Atomic orbital electron populations 1.69830 1.06812 1.28012 1.50203 1.25640 0.95721 1.02065 0.93392 0.85524 0.78960 0.79586 0.77586 1.19531 1.20450 1.20776 1.21843 0.93474 0.91959 1.52427 0.92671 1.19497 0.87115 0.90732 0.82152 1.86165 1.51376 1.55762 1.45623 1.22750 1.00627 0.92740 0.99601 1.22904 0.97346 0.94449 0.92497 1.62509 1.18254 1.11702 1.29600 1.18923 0.91453 0.91040 0.91247 1.21991 0.98316 1.01465 0.98868 1.21790 0.96032 0.92593 0.95666 1.21714 0.98579 0.97186 0.98428 1.21292 0.91058 0.99070 0.92471 1.29855 1.23007 0.99861 1.22000 1.06013 0.75845 0.74313 0.76569 1.93628 1.45303 1.74180 1.77198 1.93570 1.86798 1.26152 1.85269 1.32973 0.90062 0.85104 1.26663 1.93031 1.39078 1.87117 1.96510 1.93308 1.96437 1.25681 1.97642 1.23311 0.94359 0.89333 0.99031 0.92251 0.78172 0.93067 0.93093 0.90401 0.92813 0.85202 0.81852 0.80961 0.81731 0.79469 0.92099 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.38 11.00 21.45 0.24 -48.15 16 2 C 0.03 1.70 5.28 84.65 0.45 2.15 16 3 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.56 -29.46 8.15 25.60 0.21 -29.25 16 8 H 0.06 2.89 7.78 -2.91 -0.02 2.87 16 9 C 0.25 12.10 0.95 -10.33 -0.01 12.09 16 10 O -0.58 -30.74 13.09 -148.98 -1.95 -32.69 16 11 C -0.12 -5.49 5.26 31.47 0.17 -5.32 16 12 C 0.05 2.12 6.53 86.44 0.56 2.69 16 13 N -0.50 -19.15 2.13 -682.06 -1.45 -20.61 16 14 C 0.17 5.47 4.76 38.22 0.18 5.65 16 15 C -0.19 -5.08 8.05 22.40 0.18 -4.90 16 16 C -0.04 -0.82 10.04 22.25 0.22 -0.60 16 17 C -0.14 -2.43 10.04 22.29 0.22 -2.20 16 18 C -0.02 -0.43 9.50 22.25 0.21 -0.22 16 19 C -0.66 -18.69 5.52 22.40 0.12 -18.56 16 20 S 2.50 70.40 5.06 -56.49 -0.29 70.12 16 21 O -0.91 -31.70 16.91 -127.65 -2.16 -33.86 16 22 O -0.92 -25.17 16.75 -127.65 -2.14 -27.31 16 23 C -0.21 -5.63 5.96 113.37 0.68 -4.95 16 24 F -0.18 -4.72 17.28 44.97 0.78 -3.94 16 25 F -0.15 -5.45 12.89 44.97 0.58 -4.87 16 26 C 0.07 2.77 4.80 86.60 0.42 3.19 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.37 20.03 7.46 -74.05 -0.55 19.48 16 29 H 0.05 2.43 7.84 -2.39 -0.02 2.42 16 30 H 0.05 2.53 7.98 -2.39 -0.02 2.51 16 31 H 0.08 3.15 8.08 -2.38 -0.02 3.13 16 32 H 0.05 1.91 7.10 -2.39 -0.02 1.89 16 33 H 0.13 3.64 6.96 -2.91 -0.02 3.62 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.17 2.88 7.22 -2.91 -0.02 2.86 16 37 H 0.19 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.06 2.45 6.18 -2.39 -0.01 2.43 16 39 H 0.08 3.33 6.52 -2.39 -0.02 3.31 16 Total: -1.00 -67.12 336.49 -0.19 -67.31 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.56 Total: 30.55 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 3.61 Total: -40.24 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.22 Total: -68.75 kcal Atomic # 8 Polarization: -87.61 SS G_CDS: -6.25 Total: -93.86 kcal Atomic # 9 Polarization: -10.17 SS G_CDS: 1.36 Total: -8.81 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 70.40 SS G_CDS: -0.29 Total: 70.12 kcal Total: -67.12 -0.19 -67.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.574 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds