Wall clock time and date at job start Wed Apr 1 2020 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00079 * 2 1 4 4 H 1.48503 * 109.46941 * 265.10812 * 3 2 1 5 5 H 1.48498 * 109.47288 * 25.10892 * 3 2 1 6 6 H 1.48500 * 109.47300 * 145.11160 * 3 2 1 7 7 C 1.37875 * 119.99594 * 180.27605 * 2 1 3 8 8 H 1.08003 * 120.00189 * 354.31594 * 7 2 1 9 9 C 1.50703 * 119.99869 * 174.31185 * 7 2 1 10 10 O 1.42893 * 110.88733 * 325.86076 * 9 7 2 11 11 C 1.55158 * 111.00535 * 201.97700 * 9 7 2 12 12 C 1.54367 * 102.91954 * 206.45563 * 11 9 7 13 13 N 1.47018 * 107.29060 * 22.13905 * 12 11 9 14 14 S 1.65602 * 125.65018 * 181.12799 * 13 12 11 15 15 O 1.42096 * 104.27531 * 26.02879 * 14 13 12 16 16 O 1.42099 * 104.27612 * 153.88969 * 14 13 12 17 17 C 1.81404 * 104.44849 * 269.95782 * 14 13 12 18 18 C 1.52994 * 109.47163 * 179.97438 * 17 14 13 19 19 O 1.42900 * 109.47383 * 180.02562 * 18 17 14 20 20 C 1.42894 * 114.00314 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47326 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.46964 * 60.00159 * 21 20 19 23 23 F 1.39903 * 109.46974 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47247 * 299.99796 * 21 20 19 25 25 C 1.47424 * 108.70326 * 1.09109 * 13 12 11 26 26 H 0.96998 * 119.99492 * 359.72597 * 1 2 3 27 27 H 0.96706 * 113.99904 * 294.75301 * 10 9 7 28 28 H 1.09004 * 110.72038 * 324.79290 * 11 9 7 29 29 H 1.08998 * 110.71842 * 88.06145 * 11 9 7 30 30 H 1.09003 * 109.84860 * 262.73020 * 12 11 9 31 31 H 1.09006 * 110.02886 * 141.64833 * 12 11 9 32 32 H 1.09003 * 109.47486 * 300.00120 * 17 14 13 33 33 H 1.08999 * 109.46975 * 60.00104 * 17 14 13 34 34 H 1.09004 * 109.47240 * 299.99952 * 18 17 14 35 35 H 1.08999 * 109.46938 * 60.00268 * 18 17 14 36 36 H 1.09003 * 109.47378 * 300.00247 * 20 19 18 37 37 H 1.09000 * 109.47330 * 60.00293 * 20 19 18 38 38 H 1.09003 * 110.37071 * 217.03061 * 25 13 12 39 39 H 1.09001 * 110.36712 * 94.70794 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6001 1.9866 -1.3950 5 1 1.3988 2.6803 0.5941 6 1 3.4913 1.4722 0.8008 7 6 2.0045 -1.1941 -0.0058 8 1 1.4684 -2.1275 0.0824 9 6 3.5060 -1.1967 -0.1351 10 8 3.9469 -0.1273 -0.9740 11 6 4.0164 -2.5638 -0.6623 12 6 5.4512 -2.6376 -0.0978 13 7 5.5121 -1.7339 1.0603 14 16 6.8518 -1.4455 1.9901 15 8 7.9447 -1.7092 1.1212 16 8 6.6358 -0.1457 2.5221 17 6 6.7679 -2.6932 3.3042 18 6 7.9668 -2.5293 4.2404 19 8 7.9011 -3.5125 5.2753 20 6 8.9803 -3.4462 6.2095 21 6 8.8074 -4.5383 7.2669 22 9 8.8044 -5.7921 6.6462 23 9 9.8643 -4.4737 8.1812 24 9 7.5958 -4.3482 7.9400 25 6 4.1832 -1.1264 1.2563 26 1 -0.4849 0.8401 0.0040 27 1 3.6613 -0.2061 -1.8946 28 1 3.4066 -3.3793 -0.2730 29 1 4.0288 -2.5766 -1.7521 30 1 6.1645 -2.3160 -0.8568 31 1 5.6774 -3.6569 0.2151 32 1 5.8448 -2.5641 3.8694 33 1 6.7866 -3.6890 2.8615 34 1 8.8897 -2.6587 3.6749 35 1 7.9485 -1.5334 4.6832 36 1 9.9244 -3.5938 5.6851 37 1 8.9824 -2.4695 6.6935 38 1 4.2837 -0.0896 1.5774 39 1 3.6094 -1.6967 1.9867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828044597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:06 Heat of formation + Delta-G solvation = -307.234070 kcal Electronic energy + Delta-G solvation = -29139.595852 eV Core-core repulsion = 24181.221579 eV Total energy + Delta-G solvation = -4958.374273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.50476 -48.06831 -47.95147 -38.82249 -38.50929 -37.07118 -35.90942 -34.81306 -32.71120 -32.40653 -29.86844 -29.66022 -28.54392 -24.87002 -23.94340 -23.75714 -21.95643 -19.96505 -19.15338 -19.04798 -18.81035 -18.22920 -17.76996 -17.53605 -16.90313 -16.85615 -16.06050 -15.78677 -15.12332 -14.90358 -14.86663 -14.78438 -14.61274 -14.42591 -14.31929 -14.15214 -14.12587 -14.04771 -13.75010 -13.09314 -12.65517 -12.48217 -12.39031 -12.27655 -12.13849 -12.05639 -12.03991 -11.90406 -11.75204 -11.29784 -10.99205 -10.87425 -10.59068 -10.51024 -10.34189 -10.21645 -9.24773 -8.66781 -8.62268 -8.48377 -6.24514 -4.37530 0.14436 1.97346 2.65541 2.88324 3.32882 3.46143 3.52036 3.53833 3.70795 3.78301 4.03461 4.05915 4.25304 4.39894 4.44073 4.47026 4.50893 4.63454 4.93885 5.04502 5.09107 5.25785 5.34399 5.55739 5.68507 5.88913 6.11316 6.16747 6.32649 6.46702 6.58329 6.64488 6.73534 6.95849 7.42274 8.09269 8.61502 8.78592 9.37315 10.83818 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.002541 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.314375 B =11016.164927 C =11352.385304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.939 3.061 4 H -0.289 1.289 5 H -0.323 1.323 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.223 3.777 10 O -0.560 6.560 11 C -0.144 4.144 12 C 0.125 3.875 13 N -1.003 6.003 14 S 2.628 3.372 15 O -0.954 6.954 16 O -0.945 6.945 17 C -0.647 4.647 18 C 0.079 3.921 19 O -0.363 6.363 20 C 0.011 3.989 21 C 0.463 3.537 22 F -0.175 7.175 23 F -0.177 7.177 24 F -0.174 7.174 25 C 0.118 3.882 26 H 0.268 0.732 27 H 0.372 0.628 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.953 -8.343 9.935 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.774 3.226 4 H -0.216 1.216 5 H -0.254 1.254 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.101 0.899 9 C 0.181 3.819 10 O -0.368 6.368 11 C -0.183 4.183 12 C 0.000 4.000 13 N -0.843 5.843 14 S 2.719 3.281 15 O -0.944 6.944 16 O -0.935 6.935 17 C -0.772 4.772 18 C 0.002 3.998 19 O -0.282 6.282 20 C -0.067 4.067 21 C 0.408 3.592 22 F -0.157 7.157 23 F -0.158 7.158 24 F -0.155 7.155 25 C -0.006 4.006 26 H 0.077 0.923 27 H 0.220 0.780 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.639 -7.573 10.473 22.681 hybrid contribution -0.152 -0.097 0.091 0.202 sum 18.486 -7.670 10.563 22.631 Atomic orbital electron populations 1.69960 1.06836 1.27964 1.47196 1.25154 0.94897 1.00556 0.92404 0.85862 0.78076 0.80138 0.78538 1.21610 1.25417 1.19060 1.21200 0.88234 0.95314 1.54264 0.89943 1.20185 0.93149 0.82362 0.86164 1.86141 1.78689 1.48440 1.23510 1.23263 0.93399 1.01095 1.00577 1.21714 0.99646 0.91405 0.87245 1.58489 1.26651 1.58080 1.41102 1.04535 0.73068 0.75421 0.75043 1.93573 1.52156 1.86386 1.62320 1.93613 1.84977 1.33960 1.80956 1.31089 1.06824 1.21990 1.17327 1.22160 0.96863 0.92354 0.88439 1.87977 1.45017 1.55847 1.39331 1.23606 0.93890 0.97875 0.91352 1.20121 0.74095 0.82919 0.82033 1.93228 1.96104 1.44084 1.82237 1.93217 1.57423 1.96422 1.68736 1.93235 1.45469 1.95032 1.81802 1.22874 0.79254 0.98523 0.99959 0.92290 0.78001 0.90249 0.90758 0.91532 0.92743 0.83777 0.84088 0.90924 0.90797 0.88117 0.88064 0.89727 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.96 55.43 0.77 -24.68 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.94 23.06 24.84 -169.99 -4.22 18.84 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.32 -8.14 7.11 56.52 0.40 -7.74 16 6 H -0.26 -6.56 5.34 56.52 0.30 -6.26 16 7 C -0.55 -13.87 8.88 -34.44 -0.31 -14.17 16 8 H 0.08 2.22 7.98 -52.48 -0.42 1.81 16 9 C 0.22 4.67 0.69 -89.62 -0.06 4.61 16 10 O -0.56 -11.86 8.76 -35.23 -0.31 -12.17 16 11 C -0.14 -2.40 6.13 -24.87 -0.15 -2.56 16 12 C 0.13 1.87 6.90 -3.04 -0.02 1.85 16 13 N -1.00 -16.54 3.62 -111.39 -0.40 -16.95 16 14 S 2.63 38.37 5.65 -107.50 -0.61 37.76 16 15 O -0.95 -15.50 17.60 -57.54 -1.01 -16.51 16 16 O -0.94 -16.95 17.28 -57.54 -0.99 -17.94 16 17 C -0.65 -6.75 6.55 37.15 0.24 -6.51 16 18 C 0.08 0.73 5.95 37.15 0.22 0.95 16 19 O -0.36 -3.55 10.23 -35.23 -0.36 -3.91 16 20 C 0.01 0.08 5.90 37.16 0.22 0.30 16 21 C 0.46 3.86 3.32 37.16 0.12 3.98 16 22 F -0.18 -1.72 17.26 2.25 0.04 -1.69 16 23 F -0.18 -1.38 17.32 2.25 0.04 -1.34 16 24 F -0.17 -1.76 17.26 2.25 0.04 -1.72 16 25 C 0.12 2.32 5.98 -2.53 -0.02 2.30 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.37 6.74 9.05 45.56 0.41 7.16 16 28 H 0.08 1.29 7.98 -51.93 -0.41 0.88 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.14 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.14 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 1.84 5.85 -51.93 -0.30 1.54 16 39 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -34.12 349.55 -5.78 -39.90 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.18 Total: 2.46 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 0.15 Total: -7.30 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.37 Total: -41.63 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.68 Total: -50.54 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.12 Total: -4.75 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.22 Total: 18.84 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -0.61 Total: 37.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.12 -5.78 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828044597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.333 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -307.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds