Wall clock time and date at job start Wed Apr 1 2020 04:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00079 * 2 1 4 4 H 1.48503 * 109.46941 * 265.10812 * 3 2 1 5 5 H 1.48498 * 109.47288 * 25.10892 * 3 2 1 6 6 H 1.48500 * 109.47300 * 145.11160 * 3 2 1 7 7 C 1.37875 * 119.99594 * 180.27605 * 2 1 3 8 8 H 1.08003 * 120.00189 * 354.31594 * 7 2 1 9 9 C 1.50703 * 119.99869 * 174.31185 * 7 2 1 10 10 O 1.42893 * 110.88733 * 325.86076 * 9 7 2 11 11 C 1.55158 * 111.00535 * 201.97700 * 9 7 2 12 12 C 1.54367 * 102.91954 * 206.45563 * 11 9 7 13 13 N 1.47018 * 107.29060 * 22.13905 * 12 11 9 14 14 S 1.65602 * 125.65018 * 181.12799 * 13 12 11 15 15 O 1.42096 * 104.27531 * 26.02879 * 14 13 12 16 16 O 1.42099 * 104.27612 * 153.88969 * 14 13 12 17 17 C 1.81404 * 104.44849 * 269.95782 * 14 13 12 18 18 C 1.52994 * 109.47163 * 179.97438 * 17 14 13 19 19 O 1.42900 * 109.47383 * 180.02562 * 18 17 14 20 20 C 1.42894 * 114.00314 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47326 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.46964 * 60.00159 * 21 20 19 23 23 F 1.39903 * 109.46974 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47247 * 299.99796 * 21 20 19 25 25 C 1.47424 * 108.70326 * 1.09109 * 13 12 11 26 26 H 0.96998 * 119.99492 * 359.72597 * 1 2 3 27 27 H 0.96706 * 113.99904 * 294.75301 * 10 9 7 28 28 H 1.09004 * 110.72038 * 324.79290 * 11 9 7 29 29 H 1.08998 * 110.71842 * 88.06145 * 11 9 7 30 30 H 1.09003 * 109.84860 * 262.73020 * 12 11 9 31 31 H 1.09006 * 110.02886 * 141.64833 * 12 11 9 32 32 H 1.09003 * 109.47486 * 300.00120 * 17 14 13 33 33 H 1.08999 * 109.46975 * 60.00104 * 17 14 13 34 34 H 1.09004 * 109.47240 * 299.99952 * 18 17 14 35 35 H 1.08999 * 109.46938 * 60.00268 * 18 17 14 36 36 H 1.09003 * 109.47378 * 300.00247 * 20 19 18 37 37 H 1.09000 * 109.47330 * 60.00293 * 20 19 18 38 38 H 1.09003 * 110.37071 * 217.03061 * 25 13 12 39 39 H 1.09001 * 110.36712 * 94.70794 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6001 1.9866 -1.3950 5 1 1.3988 2.6803 0.5941 6 1 3.4913 1.4722 0.8008 7 6 2.0045 -1.1941 -0.0058 8 1 1.4684 -2.1275 0.0824 9 6 3.5060 -1.1967 -0.1351 10 8 3.9469 -0.1273 -0.9740 11 6 4.0164 -2.5638 -0.6623 12 6 5.4512 -2.6376 -0.0978 13 7 5.5121 -1.7339 1.0603 14 16 6.8518 -1.4455 1.9901 15 8 7.9447 -1.7092 1.1212 16 8 6.6358 -0.1457 2.5221 17 6 6.7679 -2.6932 3.3042 18 6 7.9668 -2.5293 4.2404 19 8 7.9011 -3.5125 5.2753 20 6 8.9803 -3.4462 6.2095 21 6 8.8074 -4.5383 7.2669 22 9 8.8044 -5.7921 6.6462 23 9 9.8643 -4.4737 8.1812 24 9 7.5958 -4.3482 7.9400 25 6 4.1832 -1.1264 1.2563 26 1 -0.4849 0.8401 0.0040 27 1 3.6613 -0.2061 -1.8946 28 1 3.4066 -3.3793 -0.2730 29 1 4.0288 -2.5766 -1.7521 30 1 6.1645 -2.3160 -0.8568 31 1 5.6774 -3.6569 0.2151 32 1 5.8448 -2.5641 3.8694 33 1 6.7866 -3.6890 2.8615 34 1 8.8897 -2.6587 3.6749 35 1 7.9485 -1.5334 4.6832 36 1 9.9244 -3.5938 5.6851 37 1 8.9824 -2.4695 6.6935 38 1 4.2837 -0.0896 1.5774 39 1 3.6094 -1.6967 1.9867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828044597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:05 Heat of formation + Delta-G solvation = -336.184601 kcal Electronic energy + Delta-G solvation = -29140.851241 eV Core-core repulsion = 24181.221579 eV Total energy + Delta-G solvation = -4959.629662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.15468 -48.70439 -48.64686 -40.00487 -39.43956 -38.30322 -37.14399 -36.34908 -34.42769 -33.43340 -31.30898 -30.28777 -30.05779 -26.66404 -24.75189 -24.34107 -23.23891 -21.58355 -20.02998 -19.75411 -19.69217 -19.40000 -18.97036 -18.80815 -17.73716 -17.64194 -17.18196 -16.99095 -16.73476 -16.33754 -15.92167 -15.57028 -15.54428 -15.30007 -15.19178 -15.08995 -14.84361 -14.80329 -14.74969 -14.54888 -14.43985 -13.96291 -13.60544 -13.46378 -13.32012 -13.20253 -13.11662 -12.90919 -12.80694 -12.65805 -12.48734 -12.21305 -12.13167 -12.01106 -11.87891 -11.17724 -11.07788 -10.62931 -10.28713 -9.86483 -8.33589 -6.44973 -0.96292 1.36472 1.47583 1.51838 1.57878 1.73069 2.19604 2.44148 2.72211 2.84714 2.93832 2.95609 3.05869 3.28357 3.50633 3.56823 3.64239 3.90760 4.03475 4.05707 4.06787 4.18282 4.33423 4.40559 4.59284 4.64064 4.67877 4.93357 5.06193 5.18227 5.28645 5.38696 5.43326 5.57603 5.62256 6.10453 6.64362 7.05473 7.35603 8.78825 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.002541 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.314375 B =11016.164927 C =11352.385304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.280 1.280 5 H -0.336 1.336 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.569 6.569 11 C -0.136 4.136 12 C 0.122 3.878 13 N -1.012 6.012 14 S 2.638 3.362 15 O -0.972 6.972 16 O -0.986 6.986 17 C -0.622 4.622 18 C 0.067 3.933 19 O -0.383 6.383 20 C 0.008 3.992 21 C 0.460 3.540 22 F -0.186 7.186 23 F -0.174 7.174 24 F -0.188 7.188 25 C 0.122 3.878 26 H 0.266 0.734 27 H 0.383 0.617 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.058 0.942 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.464 -9.612 10.301 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.169 4.169 3 Si 0.822 3.178 4 H -0.207 1.207 5 H -0.268 1.268 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.076 0.924 9 C 0.167 3.833 10 O -0.379 6.379 11 C -0.175 4.175 12 C -0.003 4.003 13 N -0.850 5.850 14 S 2.734 3.266 15 O -0.963 6.963 16 O -0.977 6.977 17 C -0.752 4.752 18 C -0.011 4.011 19 O -0.303 6.303 20 C -0.070 4.070 21 C 0.405 3.595 22 F -0.168 7.168 23 F -0.156 7.156 24 F -0.170 7.170 25 C -0.004 4.004 26 H 0.075 0.925 27 H 0.233 0.767 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.171 0.829 33 H 0.182 0.818 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.165 -8.823 10.772 25.335 hybrid contribution -0.830 0.163 0.065 0.849 sum 20.335 -8.661 10.836 24.616 Atomic orbital electron populations 1.70059 1.08142 1.28296 1.50525 1.25717 0.95147 1.02978 0.93009 0.85082 0.76553 0.77567 0.78629 1.20673 1.26843 1.19571 1.21479 0.90768 0.93731 1.51666 0.92420 1.20240 0.90817 0.84819 0.87453 1.86095 1.78392 1.48885 1.24484 1.23159 0.94499 0.98144 1.01680 1.21869 0.98182 0.93236 0.86987 1.58392 1.25487 1.58491 1.42661 1.03999 0.71962 0.75339 0.75304 1.93549 1.52252 1.86696 1.63757 1.93566 1.85195 1.37418 1.81488 1.30715 1.08322 1.20549 1.15617 1.22347 0.96916 0.93094 0.88721 1.87906 1.46477 1.56020 1.39868 1.23874 0.94181 0.98180 0.90791 1.20444 0.73591 0.83034 0.82390 1.93203 1.96126 1.45074 1.82398 1.93219 1.57177 1.96397 1.68790 1.93206 1.46466 1.95078 1.82218 1.22509 0.81201 0.97595 0.99049 0.92502 0.76706 0.89824 0.89208 0.91349 0.88761 0.82902 0.81774 0.88734 0.89552 0.85255 0.85687 0.92382 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.96 21.45 0.30 -54.74 16 2 C 0.03 1.75 5.46 84.65 0.46 2.21 16 3 Si 0.99 48.28 24.84 68.60 1.70 49.98 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.34 -16.98 7.11 99.48 0.71 -16.27 16 6 H -0.27 -13.30 5.34 99.48 0.53 -12.77 16 7 C -0.54 -27.15 8.88 25.60 0.23 -26.93 16 8 H 0.06 3.16 7.98 -2.91 -0.02 3.13 16 9 C 0.21 8.50 0.69 -10.15 -0.01 8.49 16 10 O -0.57 -23.48 8.76 -148.98 -1.31 -24.78 16 11 C -0.14 -4.20 6.13 31.80 0.20 -4.01 16 12 C 0.12 3.25 6.90 86.74 0.60 3.85 16 13 N -1.01 -31.08 3.62 -506.34 -1.83 -32.92 16 14 S 2.64 70.96 5.65 -56.49 -0.32 70.64 16 15 O -0.97 -29.10 17.60 -127.65 -2.25 -31.35 16 16 O -0.99 -34.43 17.28 -127.65 -2.21 -36.64 16 17 C -0.62 -10.69 6.55 71.98 0.47 -10.22 16 18 C 0.07 0.97 5.95 71.98 0.43 1.40 16 19 O -0.38 -6.16 10.23 -148.98 -1.52 -7.69 16 20 C 0.01 0.08 5.90 71.98 0.42 0.50 16 21 C 0.46 6.72 3.32 71.98 0.24 6.96 16 22 F -0.19 -3.35 17.26 44.97 0.78 -2.57 16 23 F -0.17 -2.39 17.32 44.97 0.78 -1.62 16 24 F -0.19 -3.55 17.26 44.97 0.78 -2.77 16 25 C 0.12 4.66 5.98 86.86 0.52 5.18 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H 0.38 13.41 9.05 -74.05 -0.67 12.74 16 28 H 0.08 2.52 7.98 -2.38 -0.02 2.50 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.16 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 2.53 5.85 -2.39 -0.01 2.51 16 39 H 0.09 3.16 8.03 -2.39 -0.02 3.14 16 Total: -1.00 -75.11 349.55 -1.29 -76.40 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.25 Total: 10.62 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 3.56 Total: -12.57 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -1.53 Total: -87.66 kcal Atomic # 8 Polarization: -93.17 SS G_CDS: -7.28 Total: -100.45 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 2.33 Total: -6.96 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.70 Total: 49.98 kcal Atomic # 16 Polarization: 70.96 SS G_CDS: -0.32 Total: 70.64 kcal Total: -75.11 -1.29 -76.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828044597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.782 kcal (2) G-P(sol) polarization free energy of solvation -75.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -334.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -336.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds