Wall clock time and date at job start Wed Apr 1 2020 04:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99642 * 2 1 4 4 H 1.48499 * 109.47038 * 269.99735 * 3 2 1 5 5 H 1.48501 * 109.47094 * 29.99855 * 3 2 1 6 6 H 1.48499 * 109.46932 * 149.99605 * 3 2 1 7 7 C 1.37869 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00005 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64379 * 56.85242 * 9 7 2 11 11 C 1.55160 * 110.86877 * 293.60377 * 9 7 2 12 12 C 1.55133 * 101.48579 * 205.90071 * 11 9 7 13 13 N 1.47419 * 104.72059 * 37.29488 * 12 11 9 14 14 S 1.65607 * 125.64444 * 155.81936 * 13 12 11 15 15 O 1.42107 * 106.40053 * 156.15325 * 14 13 12 16 16 O 1.42099 * 106.40001 * 23.23203 * 14 13 12 17 17 C 1.76198 * 107.21643 * 269.68810 * 14 13 12 18 18 C 1.38252 * 120.00213 * 269.97972 * 17 14 13 19 19 C 1.38221 * 120.00067 * 180.02562 * 18 17 14 20 20 C 1.38254 * 119.99717 * 359.95220 * 19 18 17 21 21 C 1.38218 * 120.00086 * 0.13893 * 20 19 18 22 22 C 1.50706 * 119.99798 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46875 * 119.90553 * 22 21 20 24 24 F 1.39903 * 109.46738 * 239.90843 * 22 21 20 25 25 C 1.38215 * 119.99492 * 90.00282 * 17 14 13 26 26 C 1.47018 * 108.70537 * 335.55306 * 13 12 11 27 27 H 0.96997 * 120.00586 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99735 * 303.14420 * 10 9 7 29 29 H 1.09004 * 111.00317 * 324.14148 * 11 9 7 30 30 H 1.08999 * 111.00533 * 87.95509 * 11 9 7 31 31 H 1.09003 * 110.49441 * 278.45618 * 12 11 9 32 32 H 1.08996 * 110.34075 * 156.06178 * 12 11 9 33 33 H 1.08001 * 120.00307 * 359.97438 * 18 17 14 34 34 H 1.07999 * 120.00168 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.00078 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.46840 * 359.90452 * 22 21 20 37 37 H 1.07995 * 120.00164 * 359.70284 * 25 17 14 38 38 H 1.09006 * 109.88100 * 120.70490 * 26 13 12 39 39 H 1.09000 * 109.88317 * 241.86980 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1194 11 6 0.4716 -2.6873 1.3288 12 6 0.3735 -4.2332 1.4131 13 7 1.6631 -4.7195 0.8898 14 16 2.3567 -6.1820 1.2394 15 8 3.2326 -6.4789 0.1604 16 8 1.2991 -7.0419 1.6412 17 6 3.3757 -5.9502 2.6580 18 6 4.7017 -5.5899 2.5052 19 6 5.5013 -5.4085 3.6180 20 6 4.9746 -5.5864 4.8839 21 6 3.6494 -5.9484 5.0366 22 6 3.0756 -6.1428 6.4165 23 9 2.0168 -5.2493 6.6113 24 9 2.6085 -7.4551 6.5466 25 6 2.8495 -6.1289 3.9235 26 6 2.2282 -3.6936 0.0011 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2681 -1.8420 -1.1661 29 1 1.0315 -2.2814 2.1713 30 1 -0.5192 -2.2369 1.2675 31 1 -0.4479 -4.5977 0.7962 32 1 0.2408 -4.5486 2.4480 33 1 5.1132 -5.4511 1.5163 34 1 6.5372 -5.1276 3.4987 35 1 5.5991 -5.4443 5.7535 36 1 3.8495 -5.9570 7.1612 37 1 1.8125 -6.4059 4.0429 38 1 3.2020 -3.3759 0.3740 39 1 2.3275 -4.0918 -1.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828045496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:53 Heat of formation + Delta-G solvation = -191.802089 kcal Electronic energy + Delta-G solvation = -29092.298481 eV Core-core repulsion = 24569.698939 eV Total energy + Delta-G solvation = -4522.599542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.22696 -47.21130 -39.51562 -38.09669 -37.06743 -35.67496 -34.35624 -32.52762 -32.16745 -31.56687 -29.21639 -28.33872 -26.49438 -24.89019 -23.68417 -22.22558 -21.63846 -19.82168 -19.08239 -18.13440 -17.65484 -17.50116 -17.43343 -16.89864 -16.46894 -16.08745 -15.77762 -15.04147 -14.93280 -14.43897 -14.31399 -14.16380 -14.11990 -13.57797 -13.44314 -13.21748 -13.19919 -13.01531 -12.57098 -12.24833 -12.15071 -12.07372 -11.93126 -11.84402 -11.69662 -11.36839 -11.35959 -11.13305 -10.91745 -10.79524 -10.53136 -10.45110 -10.16106 -9.76455 -9.41695 -9.39608 -8.69375 -8.49290 -8.20647 -6.32391 -4.40291 0.35481 0.64399 0.84252 2.94410 3.16874 3.24660 3.26392 3.33863 3.36613 3.81665 3.92394 4.12216 4.22228 4.47345 4.55931 4.60966 4.74772 4.84155 4.95258 5.10800 5.25990 5.34070 5.49274 5.71946 5.76951 5.83305 5.88418 5.90643 6.00834 6.19051 6.40930 6.41319 6.55710 6.73266 6.89747 6.98252 7.31367 7.34119 7.70658 7.97427 8.61260 9.28650 9.45650 10.75362 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003832 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.642573 B = 7305.997912 C = 8017.984705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.252 3.748 10 O -0.586 6.586 11 C -0.134 4.134 12 C 0.120 3.880 13 N -1.003 6.003 14 S 2.706 3.294 15 O -0.955 6.955 16 O -0.957 6.957 17 C -0.676 4.676 18 C 0.004 3.996 19 C -0.142 4.142 20 C -0.035 4.035 21 C -0.196 4.196 22 C 0.316 3.684 23 F -0.196 7.196 24 F -0.198 7.198 25 C 0.021 3.979 26 C 0.134 3.866 27 H 0.269 0.731 28 H 0.386 0.614 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.144 0.856 38 H 0.067 0.933 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.266 -8.976 11.589 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.396 6.396 11 C -0.174 4.174 12 C -0.004 4.004 13 N -0.844 5.844 14 S 2.795 3.205 15 O -0.945 6.945 16 O -0.948 6.948 17 C -0.761 4.761 18 C -0.015 4.015 19 C -0.160 4.160 20 C -0.054 4.054 21 C -0.198 4.198 22 C 0.262 3.738 23 F -0.177 7.177 24 F -0.180 7.180 25 C 0.002 3.998 26 C 0.010 3.990 27 H 0.080 0.920 28 H 0.238 0.762 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.340 -10.275 11.067 17.252 hybrid contribution 0.383 1.858 0.886 2.094 sum 8.723 -8.417 11.953 17.024 Atomic orbital electron populations 1.69575 1.05974 1.27764 1.50276 1.24986 0.95009 0.99513 0.93475 0.86423 0.79735 0.82475 0.78354 1.20361 1.21059 1.19811 1.21556 0.93662 0.90311 1.51992 0.91724 1.19416 0.86139 0.90421 0.82976 1.86094 1.51452 1.53332 1.48748 1.23362 1.02684 0.90466 1.00899 1.22202 0.83763 0.97535 0.96944 1.58437 1.31270 1.35586 1.59069 1.01556 0.73167 0.72267 0.73477 1.93565 1.67075 1.82773 1.51097 1.93564 1.54493 1.62914 1.83796 1.31433 1.10319 1.16372 1.17932 1.21156 0.91244 0.88613 1.00497 1.21293 1.00848 1.01916 0.91977 1.21208 0.93272 0.92403 0.98472 1.20461 0.96206 1.08472 0.94653 1.20351 0.85608 0.72450 0.95405 1.93049 1.60480 1.68047 1.96108 1.93033 1.90408 1.37615 1.96898 1.20732 0.99810 0.88969 0.90329 1.21904 0.96932 0.87853 0.92309 0.92046 0.76175 0.91535 0.89734 0.91437 0.92380 0.83497 0.84162 0.84528 0.86245 0.83819 0.91442 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.55 10.71 55.43 0.59 -21.96 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.42 8.22 -34.44 -0.28 -13.71 16 8 H 0.06 1.59 7.53 -52.49 -0.40 1.19 16 9 C 0.25 5.87 0.85 -89.93 -0.08 5.80 16 10 O -0.59 -14.52 13.08 -35.23 -0.46 -14.98 16 11 C -0.13 -2.85 5.69 -24.46 -0.14 -2.99 16 12 C 0.12 2.24 6.98 -2.41 -0.02 2.22 16 13 N -1.00 -18.63 3.70 -111.30 -0.41 -19.04 16 14 S 2.71 46.10 5.94 -107.50 -0.64 45.46 16 15 O -0.95 -17.81 16.87 -57.17 -0.96 -18.77 16 16 O -0.96 -17.86 16.87 -57.17 -0.96 -18.83 16 17 C -0.68 -9.74 5.97 -39.58 -0.24 -9.98 16 18 C 0.00 0.05 9.52 -39.58 -0.38 -0.33 16 19 C -0.14 -1.38 10.05 -39.58 -0.40 -1.77 16 20 C -0.04 -0.31 9.67 -39.58 -0.38 -0.70 16 21 C -0.20 -2.19 5.37 -104.62 -0.56 -2.75 16 22 C 0.32 3.02 5.45 36.01 0.20 3.22 16 23 F -0.20 -2.34 17.26 2.25 0.04 -2.30 16 24 F -0.20 -2.26 17.26 2.25 0.04 -2.22 16 25 C 0.02 0.29 9.07 -39.58 -0.36 -0.07 16 26 C 0.13 2.77 6.34 -3.07 -0.02 2.75 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 28 H 0.39 9.69 6.98 45.56 0.32 10.00 16 29 H 0.07 1.41 8.04 -51.93 -0.42 1.00 16 30 H 0.08 1.88 7.77 -51.93 -0.40 1.47 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.15 1.67 7.62 -52.49 -0.40 1.27 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.14 0.68 7.95 -52.49 -0.42 0.26 16 36 H 0.12 0.62 7.88 -51.93 -0.41 0.21 16 37 H 0.14 1.96 7.62 -52.49 -0.40 1.56 16 38 H 0.07 1.28 7.63 -51.93 -0.40 0.89 16 39 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -30.42 350.75 -8.99 -39.41 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.74 Total: 9.97 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.75 Total: -16.60 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.18 Total: -41.00 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -2.39 Total: -52.58 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.52 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 46.10 SS G_CDS: -0.64 Total: 45.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.42 -8.99 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.392 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds