Wall clock time and date at job start Wed Apr 1 2020 04:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99642 * 2 1 4 4 H 1.48499 * 109.47038 * 269.99735 * 3 2 1 5 5 H 1.48501 * 109.47094 * 29.99855 * 3 2 1 6 6 H 1.48499 * 109.46932 * 149.99605 * 3 2 1 7 7 C 1.37869 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00005 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64379 * 56.85242 * 9 7 2 11 11 C 1.55160 * 110.86877 * 293.60377 * 9 7 2 12 12 C 1.55133 * 101.48579 * 205.90071 * 11 9 7 13 13 N 1.47419 * 104.72059 * 37.29488 * 12 11 9 14 14 S 1.65607 * 125.64444 * 155.81936 * 13 12 11 15 15 O 1.42107 * 106.40053 * 156.15325 * 14 13 12 16 16 O 1.42099 * 106.40001 * 23.23203 * 14 13 12 17 17 C 1.76198 * 107.21643 * 269.68810 * 14 13 12 18 18 C 1.38252 * 120.00213 * 269.97972 * 17 14 13 19 19 C 1.38221 * 120.00067 * 180.02562 * 18 17 14 20 20 C 1.38254 * 119.99717 * 359.95220 * 19 18 17 21 21 C 1.38218 * 120.00086 * 0.13893 * 20 19 18 22 22 C 1.50706 * 119.99798 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46875 * 119.90553 * 22 21 20 24 24 F 1.39903 * 109.46738 * 239.90843 * 22 21 20 25 25 C 1.38215 * 119.99492 * 90.00282 * 17 14 13 26 26 C 1.47018 * 108.70537 * 335.55306 * 13 12 11 27 27 H 0.96997 * 120.00586 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99735 * 303.14420 * 10 9 7 29 29 H 1.09004 * 111.00317 * 324.14148 * 11 9 7 30 30 H 1.08999 * 111.00533 * 87.95509 * 11 9 7 31 31 H 1.09003 * 110.49441 * 278.45618 * 12 11 9 32 32 H 1.08996 * 110.34075 * 156.06178 * 12 11 9 33 33 H 1.08001 * 120.00307 * 359.97438 * 18 17 14 34 34 H 1.07999 * 120.00168 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.00078 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.46840 * 359.90452 * 22 21 20 37 37 H 1.07995 * 120.00164 * 359.70284 * 25 17 14 38 38 H 1.09006 * 109.88100 * 120.70490 * 26 13 12 39 39 H 1.09000 * 109.88317 * 241.86980 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1194 11 6 0.4716 -2.6873 1.3288 12 6 0.3735 -4.2332 1.4131 13 7 1.6631 -4.7195 0.8898 14 16 2.3567 -6.1820 1.2394 15 8 3.2326 -6.4789 0.1604 16 8 1.2991 -7.0419 1.6412 17 6 3.3757 -5.9502 2.6580 18 6 4.7017 -5.5899 2.5052 19 6 5.5013 -5.4085 3.6180 20 6 4.9746 -5.5864 4.8839 21 6 3.6494 -5.9484 5.0366 22 6 3.0756 -6.1428 6.4165 23 9 2.0168 -5.2493 6.6113 24 9 2.6085 -7.4551 6.5466 25 6 2.8495 -6.1289 3.9235 26 6 2.2282 -3.6936 0.0011 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2681 -1.8420 -1.1661 29 1 1.0315 -2.2814 2.1713 30 1 -0.5192 -2.2369 1.2675 31 1 -0.4479 -4.5977 0.7962 32 1 0.2408 -4.5486 2.4480 33 1 5.1132 -5.4511 1.5163 34 1 6.5372 -5.1276 3.4987 35 1 5.5991 -5.4443 5.7535 36 1 3.8495 -5.9570 7.1612 37 1 1.8125 -6.4059 4.0429 38 1 3.2020 -3.3759 0.3740 39 1 2.3275 -4.0918 -1.0087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828045496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:53 Heat of formation + Delta-G solvation = -213.524686 kcal Electronic energy + Delta-G solvation = -29093.240444 eV Core-core repulsion = 24569.698939 eV Total energy + Delta-G solvation = -4523.541504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.00860 -48.01560 -40.36731 -39.79527 -38.49566 -37.11109 -36.13200 -34.09796 -33.37647 -32.42792 -30.90803 -30.03852 -27.27113 -26.71545 -24.61505 -23.22737 -23.04201 -21.59755 -20.27677 -19.38226 -19.20693 -18.46682 -18.39343 -18.22415 -17.32446 -17.17167 -17.02642 -16.89793 -16.31395 -15.90127 -15.74478 -15.12538 -15.04501 -14.96977 -14.65269 -14.39541 -14.12314 -14.07556 -13.93116 -13.79911 -13.47134 -13.41586 -13.39462 -13.31693 -13.16113 -12.92367 -12.82106 -12.62804 -12.28837 -12.22507 -12.14412 -11.98062 -11.80048 -11.20807 -10.65883 -10.58082 -10.27427 -10.10132 -9.98910 -8.21111 -6.35561 -0.85585 -0.37311 -0.03823 1.44830 1.47977 1.55939 1.78451 2.27601 2.41329 2.61989 2.63835 2.99546 3.07912 3.21702 3.52011 3.73105 3.73977 3.94134 4.01125 4.01907 4.04727 4.17059 4.31775 4.39727 4.45176 4.60668 4.65913 4.70468 4.83970 4.91811 5.03574 5.09389 5.16343 5.20344 5.32370 5.51854 5.54482 5.61789 5.80982 6.10051 6.69035 7.35664 7.49275 8.85434 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003832 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.642573 B = 7305.997912 C = 8017.984705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.033 3.967 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.064 0.936 9 C 0.234 3.766 10 O -0.597 6.597 11 C -0.124 4.124 12 C 0.123 3.877 13 N -1.008 6.008 14 S 2.715 3.285 15 O -0.977 6.977 16 O -0.981 6.981 17 C -0.686 4.686 18 C -0.015 4.015 19 C -0.135 4.135 20 C -0.017 4.017 21 C -0.204 4.204 22 C 0.310 3.690 23 F -0.213 7.213 24 F -0.213 7.213 25 C -0.005 4.005 26 C 0.139 3.861 27 H 0.271 0.729 28 H 0.381 0.619 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.190 0.810 36 H 0.177 0.823 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -8.589 14.053 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.082 0.918 9 C 0.193 3.807 10 O -0.407 6.407 11 C -0.164 4.164 12 C -0.002 4.002 13 N -0.847 5.847 14 S 2.811 3.189 15 O -0.968 6.968 16 O -0.971 6.971 17 C -0.775 4.775 18 C -0.034 4.034 19 C -0.153 4.153 20 C -0.034 4.034 21 C -0.205 4.205 22 C 0.257 3.743 23 F -0.195 7.195 24 F -0.194 7.194 25 C -0.025 4.025 26 C 0.014 3.986 27 H 0.080 0.920 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.168 0.832 34 H 0.196 0.804 35 H 0.207 0.793 36 H 0.194 0.806 37 H 0.149 0.851 38 H 0.100 0.900 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.024 -9.906 13.486 20.038 hybrid contribution -0.389 1.697 0.184 1.751 sum 10.635 -8.209 13.670 19.166 Atomic orbital electron populations 1.69659 1.06873 1.28369 1.50378 1.25648 0.95765 1.02181 0.93167 0.85518 0.78789 0.78974 0.78080 1.20514 1.20852 1.19181 1.21828 0.93874 0.91384 1.52480 0.91763 1.19684 0.86595 0.91139 0.83286 1.86089 1.51629 1.53102 1.49832 1.23154 1.01377 0.92150 0.99730 1.22144 0.83884 0.95771 0.98379 1.58397 1.31516 1.35379 1.59370 1.00907 0.72835 0.71374 0.73830 1.93526 1.67255 1.82948 1.53044 1.93525 1.55942 1.63433 1.84232 1.30746 1.10777 1.19682 1.16338 1.21427 0.90767 0.89135 1.02109 1.21784 1.02193 1.00135 0.91230 1.21827 0.92474 0.89096 1.00034 1.20804 0.97166 1.07996 0.94584 1.20971 0.86037 0.71368 0.95943 1.93014 1.61671 1.68638 1.96151 1.93004 1.90702 1.38757 1.96926 1.20809 1.00005 0.90457 0.91183 1.21740 0.97005 0.87449 0.92377 0.91974 0.76778 0.91783 0.91255 0.91945 0.89887 0.83215 0.80364 0.79265 0.80612 0.85111 0.90010 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.45 10.71 21.45 0.23 -46.22 16 2 C 0.03 1.65 5.28 84.65 0.45 2.09 16 3 Si 0.96 39.89 29.54 68.60 2.03 41.92 16 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -28.08 8.22 25.60 0.21 -27.87 16 8 H 0.06 3.15 7.53 -2.91 -0.02 3.13 16 9 C 0.23 11.13 0.85 -10.35 -0.01 11.12 16 10 O -0.60 -30.53 13.08 -148.98 -1.95 -32.48 16 11 C -0.12 -5.38 5.69 32.07 0.18 -5.20 16 12 C 0.12 4.66 6.98 86.93 0.61 5.27 16 13 N -1.01 -38.18 3.70 -506.03 -1.87 -40.05 16 14 S 2.72 94.54 5.94 -56.49 -0.34 94.20 16 15 O -0.98 -37.29 16.87 -128.00 -2.16 -39.45 16 16 O -0.98 -37.74 16.87 -128.00 -2.16 -39.90 16 17 C -0.69 -19.39 5.97 22.27 0.13 -19.26 16 18 C -0.01 -0.34 9.52 22.27 0.21 -0.13 16 19 C -0.14 -2.03 10.05 22.27 0.22 -1.81 16 20 C -0.02 -0.21 9.67 22.27 0.22 0.01 16 21 C -0.20 -3.93 5.37 -19.86 -0.11 -4.03 16 22 C 0.31 4.92 5.45 71.24 0.39 5.31 16 23 F -0.21 -4.70 17.26 44.97 0.78 -3.93 16 24 F -0.21 -4.43 17.26 44.97 0.78 -3.65 16 25 C 0.00 -0.13 9.07 22.27 0.20 0.07 16 26 C 0.14 5.85 6.34 86.73 0.55 6.40 16 27 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 28 H 0.38 19.83 6.98 -74.06 -0.52 19.31 16 29 H 0.06 2.75 8.04 -2.39 -0.02 2.73 16 30 H 0.07 3.17 7.77 -2.39 -0.02 3.16 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.15 3.24 7.62 -2.91 -0.02 3.21 16 34 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.19 0.41 7.95 -2.91 -0.02 0.39 16 36 H 0.18 0.82 7.88 -2.39 -0.02 0.80 16 37 H 0.13 3.66 7.62 -2.91 -0.02 3.64 16 38 H 0.08 3.14 7.63 -2.38 -0.02 3.12 16 39 H 0.06 2.45 8.07 -2.39 -0.02 2.43 16 Total: -1.00 -67.90 350.75 -0.82 -68.72 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.59 Total: 28.87 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.26 Total: -28.03 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.64 Total: -86.27 kcal Atomic # 8 Polarization: -105.56 SS G_CDS: -6.27 Total: -111.83 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 1.55 Total: -7.58 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: 94.54 SS G_CDS: -0.34 Total: 94.20 kcal Total: -67.90 -0.82 -68.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828045496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.806 kcal (2) G-P(sol) polarization free energy of solvation -67.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds