Wall clock time and date at job start Wed Apr 1 2020 04:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86806 * 120.00014 * 2 1 4 4 H 1.48497 * 109.46970 * 269.99921 * 3 2 1 5 5 H 1.48502 * 109.46928 * 29.99994 * 3 2 1 6 6 H 1.48492 * 109.47102 * 149.99876 * 3 2 1 7 7 C 1.39052 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99628 * 145.35592 * 7 2 1 9 9 N 1.36868 * 120.00204 * 325.36093 * 7 2 1 10 10 C 1.46496 * 120.00083 * 12.74211 * 9 7 2 11 11 C 1.50704 * 109.47243 * 70.19428 * 10 9 7 12 12 O 1.20829 * 119.99553 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00170 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99814 * 192.74809 * 9 7 2 15 15 O 1.21588 * 120.00504 * 6.02249 * 14 9 7 16 16 C 1.47739 * 119.99935 * 186.02139 * 14 9 7 17 17 C 1.39681 * 120.12424 * 30.81473 * 16 14 9 18 18 C 1.37936 * 119.95881 * 179.69968 * 17 16 14 19 19 C 1.38301 * 120.21635 * 0.60061 * 18 17 16 20 20 C 1.38833 * 120.25019 * 359.67542 * 19 18 17 21 21 O 1.35912 * 119.98439 * 180.02562 * 20 19 18 22 22 C 1.42893 * 116.99804 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46947 * 179.97438 * 22 21 20 24 24 F 1.39896 * 109.47219 * 60.00319 * 23 22 21 25 25 F 1.39910 * 109.46995 * 179.97438 * 23 22 21 26 26 F 1.39893 * 109.47306 * 299.99730 * 23 22 21 27 27 C 1.38475 * 120.03476 * 0.02562 * 20 19 18 28 28 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47180 * 310.19681 * 10 9 7 30 30 H 1.08999 * 109.47640 * 190.19424 * 10 9 7 31 31 H 0.96704 * 116.99251 * 180.02562 * 13 11 10 32 32 H 1.07998 * 120.01482 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.89500 * 180.29706 * 18 17 16 34 34 H 1.08003 * 119.87912 * 179.69809 * 19 18 17 35 35 H 1.09004 * 109.47477 * 299.99811 * 22 21 20 36 36 H 1.09004 * 109.47174 * 59.99934 * 22 21 20 37 37 H 1.07997 * 120.10733 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5451 1.4402 0.7000 7 6 2.0089 -1.2042 0.0005 8 1 2.9453 -1.2873 -0.5311 9 7 1.5066 -2.2842 0.6747 10 6 0.1233 -2.2682 1.1568 11 6 -0.8186 -2.3526 -0.0166 12 8 -0.3793 -2.4197 -1.1402 13 8 -2.1454 -2.3542 0.1865 14 6 2.2847 -3.3624 0.8953 15 8 3.4622 -3.3344 0.5936 16 6 1.7068 -4.5784 1.5036 17 6 0.3674 -4.9056 1.2796 18 6 -0.1670 -6.0450 1.8442 19 6 0.6158 -6.8593 2.6423 20 6 1.9465 -6.5395 2.8754 21 8 2.7110 -7.3438 3.6602 22 6 2.0803 -8.5014 4.2116 23 6 3.0904 -9.2775 5.0590 24 9 3.5544 -8.4609 6.0958 25 9 2.4727 -10.4106 5.5994 26 9 4.1673 -9.6706 4.2573 27 6 2.4953 -5.4014 2.3088 28 1 -0.4850 0.8400 0.0004 29 1 -0.0601 -1.3435 1.7041 30 1 -0.0414 -3.1198 1.8168 31 1 -2.7093 -2.4102 -0.5970 32 1 -0.2481 -4.2691 0.6612 33 1 -1.2014 -6.2996 1.6665 34 1 0.1904 -7.7476 3.0856 35 1 1.2409 -8.1952 4.8360 36 1 1.7191 -9.1379 3.4038 37 1 3.5305 -5.1517 2.4891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:49 Heat of formation + Delta-G solvation = -246.528641 kcal Electronic energy + Delta-G solvation = -30554.824575 eV Core-core repulsion = 25463.638736 eV Total energy + Delta-G solvation = -5091.185839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.43984 -48.00406 -47.87543 -40.50428 -39.59535 -38.38201 -36.93715 -35.36261 -34.49551 -32.26031 -31.39618 -30.63215 -29.30561 -27.74304 -25.55930 -24.17729 -22.67446 -22.36179 -21.12764 -19.98162 -18.96578 -18.91026 -18.10575 -17.74865 -17.17876 -17.02752 -16.55826 -16.11559 -15.85353 -15.61657 -15.04150 -14.87523 -14.79731 -14.71208 -14.34610 -14.33806 -14.30748 -14.05301 -14.05067 -13.79087 -13.45229 -13.20510 -12.91961 -12.70605 -12.15580 -12.14233 -11.96779 -11.86364 -11.47224 -11.21487 -11.00449 -10.79917 -10.59536 -10.38507 -10.34922 -9.53330 -9.00679 -8.91161 -8.63966 -8.25758 -8.17841 -6.78730 -3.91129 1.12349 1.48141 1.94874 2.78157 3.04255 3.17260 3.26146 3.36152 3.37116 3.46670 3.59529 3.85700 4.00883 4.07770 4.20229 4.46123 4.55514 4.55643 4.82858 4.86200 4.98335 5.25765 5.39548 5.49072 5.62278 5.77865 6.06984 6.21020 6.36095 6.45336 6.47271 6.59808 6.66449 7.19705 7.32911 7.50685 7.82461 8.19626 8.90865 9.00836 9.13719 9.68143 10.31114 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002704 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.398469 B =10352.480974 C =11297.462062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.044 3.956 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.300 4.300 8 H 0.115 0.885 9 N -0.410 5.410 10 C 0.118 3.882 11 C 0.498 3.502 12 O -0.499 6.499 13 O -0.535 6.535 14 C 0.473 3.527 15 O -0.572 6.572 16 C -0.054 4.054 17 C -0.141 4.141 18 C -0.083 4.083 19 C -0.205 4.205 20 C 0.116 3.884 21 O -0.300 6.300 22 C 0.015 3.985 23 C 0.465 3.535 24 F -0.173 7.173 25 F -0.174 7.174 26 F -0.173 7.173 27 C -0.099 4.099 28 H 0.277 0.723 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.392 0.608 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -14.313 9.876 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.162 4.162 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.426 4.426 8 H 0.133 0.867 9 N -0.127 5.127 10 C -0.008 4.008 11 C 0.338 3.662 12 O -0.384 6.384 13 O -0.347 6.347 14 C 0.264 3.736 15 O -0.457 6.457 16 C -0.058 4.058 17 C -0.160 4.160 18 C -0.101 4.101 19 C -0.225 4.225 20 C 0.072 3.928 21 O -0.214 6.214 22 C -0.063 4.063 23 C 0.410 3.590 24 F -0.154 7.154 25 F -0.156 7.156 26 F -0.154 7.154 27 C -0.119 4.119 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.116 0.884 31 H 0.248 0.752 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.159 -14.093 9.802 17.663 hybrid contribution -0.465 0.636 -0.558 0.965 sum -4.624 -13.457 9.244 16.968 Atomic orbital electron populations 1.69678 1.06734 1.28682 1.44155 1.25272 0.94942 1.00260 0.95699 0.86041 0.80340 0.80238 0.78859 1.20140 1.20541 1.18847 1.19640 1.07127 0.85996 1.29859 0.86748 1.43516 1.07289 1.14742 1.47175 1.21584 0.81580 1.04902 0.92720 1.23209 0.80446 0.70876 0.91681 1.90625 1.77207 1.45186 1.25399 1.84509 1.20110 1.87180 1.42864 1.17575 0.86889 0.82751 0.86407 1.90646 1.15566 1.82049 1.57401 1.20096 0.93186 0.96231 0.96266 1.21693 0.94879 0.97895 1.01505 1.20814 0.99667 0.93525 0.96081 1.21178 0.93246 1.02720 1.05328 1.18682 0.89871 0.91197 0.93056 1.86042 1.38057 1.34176 1.63146 1.23745 0.94282 0.89109 0.99135 1.20030 0.81479 0.78121 0.79326 1.93241 1.89734 1.72227 1.60228 1.93222 1.82731 1.52805 1.86821 1.93242 1.57793 1.91344 1.73033 1.20391 1.01308 0.92323 0.97849 0.91158 0.86573 0.88410 0.75172 0.85125 0.85268 0.85608 0.87340 0.87391 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.07 8.44 55.50 0.47 -20.60 16 2 C 0.04 1.10 5.04 -17.45 -0.09 1.01 16 3 Si 0.92 19.80 29.67 -169.99 -5.04 14.76 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.30 -8.10 8.45 -15.00 -0.13 -8.22 16 8 H 0.11 3.29 7.47 -52.49 -0.39 2.90 16 9 N -0.41 -10.16 2.41 -117.21 -0.28 -10.44 16 10 C 0.12 2.49 4.80 -5.19 -0.02 2.47 16 11 C 0.50 10.68 4.04 36.01 0.15 10.83 16 12 O -0.50 -12.70 15.97 -18.75 -0.30 -13.00 16 13 O -0.54 -9.20 13.42 -39.25 -0.53 -9.73 16 14 C 0.47 11.52 7.36 -12.38 -0.09 11.43 16 15 O -0.57 -15.76 16.38 5.29 0.09 -15.67 16 16 C -0.05 -1.05 5.38 -104.98 -0.56 -1.61 16 17 C -0.14 -2.35 7.37 -39.15 -0.29 -2.64 16 18 C -0.08 -1.06 10.02 -39.67 -0.40 -1.46 16 19 C -0.21 -2.41 9.04 -39.34 -0.36 -2.76 16 20 C 0.12 1.63 6.68 -39.27 -0.26 1.36 16 21 O -0.30 -3.78 10.02 -19.46 -0.20 -3.98 16 22 C 0.01 0.12 4.70 37.16 0.17 0.30 16 23 C 0.46 4.26 3.32 37.16 0.12 4.39 16 24 F -0.17 -1.86 17.26 2.25 0.04 -1.82 16 25 F -0.17 -1.45 17.32 2.25 0.04 -1.41 16 26 F -0.17 -1.88 17.26 2.25 0.04 -1.84 16 27 C -0.10 -1.72 9.54 -39.00 -0.37 -2.09 16 28 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.12 2.53 6.68 -51.93 -0.35 2.19 16 30 H 0.10 1.77 4.38 -51.93 -0.23 1.54 16 31 H 0.39 5.15 9.10 45.56 0.41 5.57 16 32 H 0.13 2.33 4.00 -52.49 -0.21 2.12 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.13 0.99 6.28 -52.48 -0.33 0.66 16 35 H 0.11 0.64 7.66 -51.93 -0.40 0.24 16 36 H 0.11 0.65 7.66 -51.93 -0.40 0.26 16 37 H 0.14 2.56 7.94 -52.49 -0.42 2.14 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -32.87 332.73 -4.65 -37.52 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -1.86 Total: 8.21 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -2.13 Total: 12.99 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.19 Total: -31.04 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.93 Total: -42.37 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.12 Total: -5.08 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.04 Total: 14.76 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.87 -4.65 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.011 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds