Wall clock time and date at job start Wed Apr 1 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86806 * 120.00014 * 2 1 4 4 H 1.48497 * 109.46970 * 269.99921 * 3 2 1 5 5 H 1.48502 * 109.46928 * 29.99994 * 3 2 1 6 6 H 1.48492 * 109.47102 * 149.99876 * 3 2 1 7 7 C 1.39052 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99628 * 145.35592 * 7 2 1 9 9 N 1.36868 * 120.00204 * 325.36093 * 7 2 1 10 10 C 1.46496 * 120.00083 * 12.74211 * 9 7 2 11 11 C 1.50704 * 109.47243 * 70.19428 * 10 9 7 12 12 O 1.20829 * 119.99553 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00170 * 179.97438 * 11 10 9 14 14 C 1.34776 * 119.99814 * 192.74809 * 9 7 2 15 15 O 1.21588 * 120.00504 * 6.02249 * 14 9 7 16 16 C 1.47739 * 119.99935 * 186.02139 * 14 9 7 17 17 C 1.39681 * 120.12424 * 30.81473 * 16 14 9 18 18 C 1.37936 * 119.95881 * 179.69968 * 17 16 14 19 19 C 1.38301 * 120.21635 * 0.60061 * 18 17 16 20 20 C 1.38833 * 120.25019 * 359.67542 * 19 18 17 21 21 O 1.35912 * 119.98439 * 180.02562 * 20 19 18 22 22 C 1.42893 * 116.99804 * 0.02562 * 21 20 19 23 23 C 1.53002 * 109.46947 * 179.97438 * 22 21 20 24 24 F 1.39896 * 109.47219 * 60.00319 * 23 22 21 25 25 F 1.39910 * 109.46995 * 179.97438 * 23 22 21 26 26 F 1.39893 * 109.47306 * 299.99730 * 23 22 21 27 27 C 1.38475 * 120.03476 * 0.02562 * 20 19 18 28 28 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47180 * 310.19681 * 10 9 7 30 30 H 1.08999 * 109.47640 * 190.19424 * 10 9 7 31 31 H 0.96704 * 116.99251 * 180.02562 * 13 11 10 32 32 H 1.07998 * 120.01482 * 359.97438 * 17 16 14 33 33 H 1.07998 * 119.89500 * 180.29706 * 18 17 16 34 34 H 1.08003 * 119.87912 * 179.69809 * 19 18 17 35 35 H 1.09004 * 109.47477 * 299.99811 * 22 21 20 36 36 H 1.09004 * 109.47174 * 59.99934 * 22 21 20 37 37 H 1.07997 * 120.10733 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5451 1.4402 0.7000 7 6 2.0089 -1.2042 0.0005 8 1 2.9453 -1.2873 -0.5311 9 7 1.5066 -2.2842 0.6747 10 6 0.1233 -2.2682 1.1568 11 6 -0.8186 -2.3526 -0.0166 12 8 -0.3793 -2.4197 -1.1402 13 8 -2.1454 -2.3542 0.1865 14 6 2.2847 -3.3624 0.8953 15 8 3.4622 -3.3344 0.5936 16 6 1.7068 -4.5784 1.5036 17 6 0.3674 -4.9056 1.2796 18 6 -0.1670 -6.0450 1.8442 19 6 0.6158 -6.8593 2.6423 20 6 1.9465 -6.5395 2.8754 21 8 2.7110 -7.3438 3.6602 22 6 2.0803 -8.5014 4.2116 23 6 3.0904 -9.2775 5.0590 24 9 3.5544 -8.4609 6.0958 25 9 2.4727 -10.4106 5.5994 26 9 4.1673 -9.6706 4.2573 27 6 2.4953 -5.4014 2.3088 28 1 -0.4850 0.8400 0.0004 29 1 -0.0601 -1.3435 1.7041 30 1 -0.0414 -3.1198 1.8168 31 1 -2.7093 -2.4102 -0.5970 32 1 -0.2481 -4.2691 0.6612 33 1 -1.2014 -6.2996 1.6665 34 1 0.1904 -7.7476 3.0856 35 1 1.2409 -8.1952 4.8360 36 1 1.7191 -9.1379 3.4038 37 1 3.5305 -5.1517 2.4891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:48 Heat of formation + Delta-G solvation = -269.418480 kcal Electronic energy + Delta-G solvation = -30555.817153 eV Core-core repulsion = 25463.638736 eV Total energy + Delta-G solvation = -5092.178417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.16426 -48.70430 -48.65540 -41.86833 -40.96985 -39.99446 -38.22721 -37.10745 -36.27434 -34.07956 -32.40131 -31.88965 -30.38964 -29.37036 -27.30375 -25.17490 -23.91086 -23.50644 -22.75749 -21.35975 -19.90345 -19.69550 -19.15284 -18.90706 -18.85147 -18.57198 -17.94621 -17.31938 -17.14514 -16.90961 -16.60563 -16.31054 -15.97425 -15.94654 -15.54745 -15.48291 -15.24857 -15.08355 -14.88735 -14.81624 -14.79772 -14.51397 -14.28914 -13.97112 -13.71305 -13.63206 -13.44465 -12.98591 -12.94722 -12.52967 -12.46306 -12.18058 -12.09997 -12.07178 -11.99374 -11.34470 -10.89000 -10.64540 -10.12828 -10.00862 -9.35345 -8.68450 -5.91057 -0.12530 0.31568 1.18472 1.30584 1.39217 1.53070 1.72333 1.87960 1.98056 2.20025 2.45257 2.67269 2.68651 2.79874 2.93677 3.15414 3.31064 3.66995 3.73807 3.96615 4.00151 4.06229 4.10475 4.23807 4.27409 4.48451 4.71822 4.87285 4.90159 5.10849 5.27433 5.37177 5.40687 5.50077 5.90263 6.02255 6.16373 6.29025 6.98567 7.18661 7.49709 7.81930 8.40589 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002704 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.398469 B =10352.480974 C =11297.462062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.021 3.979 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.258 1.258 6 H -0.276 1.276 7 C -0.349 4.349 8 H 0.076 0.924 9 N -0.422 5.422 10 C 0.119 3.881 11 C 0.509 3.491 12 O -0.546 6.546 13 O -0.517 6.517 14 C 0.462 3.538 15 O -0.625 6.625 16 C -0.082 4.082 17 C -0.152 4.152 18 C -0.064 4.064 19 C -0.176 4.176 20 C 0.128 3.872 21 O -0.319 6.319 22 C 0.007 3.993 23 C 0.464 3.536 24 F -0.186 7.186 25 F -0.167 7.167 26 F -0.187 7.187 27 C -0.120 4.120 28 H 0.284 0.716 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.175 0.825 34 H 0.183 0.817 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -16.491 11.649 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.182 1.182 6 H -0.201 1.201 7 C -0.476 4.476 8 H 0.094 0.906 9 N -0.138 5.138 10 C -0.006 4.006 11 C 0.352 3.648 12 O -0.435 6.435 13 O -0.329 6.329 14 C 0.254 3.746 15 O -0.513 6.513 16 C -0.085 4.085 17 C -0.171 4.171 18 C -0.082 4.082 19 C -0.194 4.194 20 C 0.083 3.917 21 O -0.234 6.234 22 C -0.069 4.069 23 C 0.410 3.590 24 F -0.168 7.168 25 F -0.148 7.148 26 F -0.169 7.169 27 C -0.140 4.140 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.192 0.808 34 H 0.200 0.800 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.593 -16.281 11.600 21.384 hybrid contribution 0.514 1.063 -1.000 1.547 sum -7.079 -15.218 10.600 19.851 Atomic orbital electron populations 1.69694 1.07073 1.29596 1.43298 1.25886 0.95768 1.02060 0.94703 0.85183 0.78872 0.77039 0.78633 1.20229 1.18154 1.20093 1.19379 1.07046 0.88420 1.32735 0.90592 1.43561 1.08852 1.14441 1.46995 1.21647 0.79984 1.05882 0.93045 1.23072 0.81494 0.69541 0.90727 1.90614 1.78310 1.47490 1.27045 1.84427 1.18295 1.86262 1.43919 1.18519 0.86437 0.84096 0.85575 1.90572 1.17886 1.83436 1.59448 1.19679 0.94994 0.95066 0.98763 1.21624 0.93281 0.99816 1.02361 1.21278 1.01623 0.91225 0.94042 1.21755 0.91402 1.03388 1.02865 1.18554 0.90826 0.90009 0.92268 1.86006 1.39110 1.35431 1.62833 1.24195 0.94324 0.87925 1.00490 1.20240 0.81357 0.78302 0.79080 1.93220 1.89994 1.72642 1.60906 1.93239 1.82430 1.52418 1.86722 1.93219 1.58758 1.91511 1.73384 1.20238 1.00317 0.94220 0.99234 0.90456 0.87394 0.85170 0.72685 0.86476 0.80762 0.79976 0.83822 0.84132 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.76 8.44 21.68 0.18 -42.58 16 2 C 0.02 1.09 5.04 84.96 0.43 1.52 16 3 Si 0.98 41.87 29.67 68.60 2.04 43.91 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.35 -20.20 8.45 84.10 0.71 -19.49 16 8 H 0.08 4.83 7.47 -2.91 -0.02 4.81 16 9 N -0.42 -22.20 2.41 -643.00 -1.55 -23.74 16 10 C 0.12 5.13 4.80 85.64 0.41 5.54 16 11 C 0.51 21.80 4.04 71.24 0.29 22.09 16 12 O -0.55 -28.40 15.97 21.95 0.35 -28.05 16 13 O -0.52 -16.66 13.42 -51.38 -0.69 -17.35 16 14 C 0.46 24.18 7.36 86.76 0.64 24.81 16 15 O -0.62 -37.78 16.38 -3.99 -0.07 -37.85 16 16 C -0.08 -3.27 5.38 -20.10 -0.11 -3.37 16 17 C -0.15 -4.83 7.37 22.55 0.17 -4.66 16 18 C -0.06 -1.31 10.02 22.21 0.22 -1.09 16 19 C -0.18 -3.05 9.04 22.43 0.20 -2.85 16 20 C 0.13 3.22 6.68 22.47 0.15 3.37 16 21 O -0.32 -7.13 10.02 -92.56 -0.93 -8.06 16 22 C 0.01 0.08 4.70 71.98 0.34 0.42 16 23 C 0.46 7.20 3.32 71.98 0.24 7.44 16 24 F -0.19 -3.68 17.26 44.97 0.78 -2.90 16 25 F -0.17 -2.22 17.32 44.97 0.78 -1.44 16 26 F -0.19 -3.77 17.26 44.97 0.78 -3.00 16 27 C -0.12 -4.26 9.54 22.64 0.22 -4.05 16 28 H 0.28 13.09 8.31 -92.71 -0.77 12.32 16 29 H 0.11 4.78 6.68 -2.39 -0.02 4.76 16 30 H 0.13 4.67 4.38 -2.39 -0.01 4.66 16 31 H 0.41 9.82 9.10 -74.05 -0.67 9.15 16 32 H 0.12 4.05 4.00 -2.91 -0.01 4.04 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.18 1.20 6.28 -2.91 -0.02 1.18 16 35 H 0.14 0.72 7.66 -2.39 -0.02 0.70 16 36 H 0.14 0.78 7.66 -2.38 -0.02 0.76 16 37 H 0.12 4.59 7.94 -2.91 -0.02 4.57 16 Total: -1.00 -80.31 332.73 6.09 -74.22 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.52 Total: 17.15 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 3.90 Total: 29.67 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -1.36 Total: -66.32 kcal Atomic # 8 Polarization: -89.97 SS G_CDS: -1.33 Total: -91.31 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 2.33 Total: -7.34 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.04 Total: 43.91 kcal Total: -80.31 6.09 -74.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.194 kcal (2) G-P(sol) polarization free energy of solvation -80.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds