Wall clock time and date at job start Wed Apr 1 2020 04:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99742 * 2 1 4 4 S 1.65592 * 120.00192 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.40197 * 339.96413 * 4 2 1 6 6 O 1.42097 * 106.40276 * 207.04917 * 4 2 1 7 7 N 1.65594 * 107.22268 * 93.50624 * 4 2 1 8 8 C 1.36936 * 120.00329 * 265.98487 * 7 4 2 9 9 H 1.07999 * 120.00364 * 323.17137 * 8 7 4 10 10 C 1.38814 * 120.00069 * 143.16021 * 8 7 4 11 11 N 1.31621 * 119.99705 * 155.68519 * 10 8 7 12 12 Si 1.86803 * 120.00201 * 335.68499 * 10 8 7 13 13 H 1.48496 * 109.47165 * 95.48918 * 12 10 8 14 14 H 1.48499 * 109.47316 * 215.49107 * 12 10 8 15 15 H 1.48503 * 109.46820 * 335.48870 * 12 10 8 16 16 C 1.46500 * 119.99911 * 85.98479 * 7 4 2 17 17 C 1.50705 * 109.47297 * 95.27890 * 16 7 4 18 18 C 1.38270 * 119.98253 * 267.66326 * 17 16 7 19 19 C 1.38221 * 120.04952 * 179.97438 * 18 17 16 20 20 C 1.38227 * 120.02823 * 359.78075 * 19 18 17 21 21 N 1.47991 * 120.01724 * 180.25370 * 20 19 18 22 22 O 1.21799 * 120.00291 * 0.21537 * 21 20 19 23 23 O 1.21801 * 120.00286 * 180.20960 * 21 20 19 24 24 C 1.38441 * 119.96808 * 0.46998 * 20 19 18 25 25 F 1.35099 * 120.02412 * 179.78882 * 24 20 19 26 26 C 1.38170 * 119.98675 * 87.63214 * 17 16 7 27 27 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47010 * 299.99667 * 1 2 3 29 29 H 1.09004 * 109.47219 * 59.99684 * 1 2 3 30 30 H 1.08998 * 109.47560 * 274.23917 * 3 2 1 31 31 H 1.08992 * 109.47179 * 34.24460 * 3 2 1 32 32 H 1.09001 * 109.46723 * 154.24143 * 3 2 1 33 33 H 0.97000 * 119.99763 * 180.02562 * 11 10 8 34 34 H 1.08990 * 109.47364 * 335.27432 * 16 7 4 35 35 H 1.09005 * 109.47334 * 215.27285 * 16 7 4 36 36 H 1.08003 * 119.97726 * 359.96863 * 18 17 16 37 37 H 1.07996 * 119.98775 * 180.02562 * 19 18 17 38 38 H 1.07992 * 120.02056 * 0.05065 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4340 -0.0006 5 8 1.3845 -2.4221 0.4660 6 8 3.5450 -1.1748 0.6194 7 7 2.6219 -1.8096 -1.5795 8 6 1.7738 -2.6247 -2.2805 9 1 1.2921 -3.4555 -1.7866 10 6 1.5329 -2.3829 -3.6261 11 7 1.1408 -3.3640 -4.4111 12 14 1.7651 -0.6652 -4.3227 13 1 3.1199 -0.5523 -4.9199 14 1 0.7408 -0.4122 -5.3676 15 1 1.6191 0.3342 -3.2341 16 6 3.8204 -1.2697 -2.2265 17 6 4.9372 -2.2776 -2.1363 18 6 5.8256 -2.2316 -1.0778 19 6 6.8501 -3.1556 -0.9934 20 6 6.9848 -4.1297 -1.9649 21 7 8.0785 -5.1224 -1.8713 22 8 8.8578 -5.0836 -0.9361 23 8 8.1992 -5.9782 -2.7295 24 6 6.0989 -4.1735 -3.0278 25 9 6.2321 -5.1224 -3.9802 26 6 5.0724 -3.2476 -3.1109 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.3133 1.6215 -1.0248 31 1 1.6434 2.0082 0.5782 32 1 3.1807 1.1207 0.4466 33 1 0.9729 -3.1951 -5.3514 34 1 4.1203 -0.3493 -1.7257 35 1 3.6044 -1.0596 -3.2741 36 1 5.7192 -1.4730 -0.3165 37 1 7.5433 -3.1190 -0.1661 38 1 4.3785 -3.2832 -3.9377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842650672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:31 Heat of formation + Delta-G solvation = -72.872639 kcal Electronic energy + Delta-G solvation = -29761.552700 eV Core-core repulsion = 25264.030288 eV Total energy + Delta-G solvation = -4497.522412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.083 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.05777 -41.95452 -39.44078 -36.50051 -36.39495 -36.26432 -35.56558 -34.99389 -32.75797 -31.67548 -30.81808 -27.87957 -27.69018 -25.20730 -24.24374 -23.92970 -23.12317 -21.78357 -19.25002 -18.74331 -18.56575 -17.84730 -17.47085 -17.43863 -16.88273 -16.61207 -16.37792 -15.87423 -15.61401 -15.31822 -14.77534 -14.30725 -14.26469 -13.89190 -13.61723 -13.30330 -13.07017 -12.75663 -12.61638 -12.46202 -12.29719 -12.21802 -11.96554 -11.73855 -11.43681 -11.36828 -11.31282 -11.10331 -11.00330 -10.99195 -10.99092 -10.90256 -10.60329 -10.39133 -9.48439 -9.33562 -8.99160 -8.68032 -8.51101 -6.83527 -4.37675 -0.09788 0.98131 1.26950 1.48074 1.52303 2.74763 2.96378 2.97658 3.23448 3.60148 3.77857 3.78735 4.23271 4.38856 4.48802 4.59604 4.77178 5.02996 5.11654 5.21009 5.25726 5.40627 5.58366 5.58955 5.65460 5.67178 5.81308 5.84381 5.88964 5.93041 6.12688 6.28228 6.34320 6.36540 6.51496 6.64985 6.99789 7.25501 7.78579 8.02555 8.67656 8.69019 10.23714 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004723 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.988598 B = 5927.044575 C = 7134.801688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.021 6.021 3 C 0.087 3.913 4 S 2.697 3.303 5 O -0.978 6.978 6 O -1.010 7.010 7 N -0.846 5.846 8 C -0.291 4.291 9 H 0.121 0.879 10 C 0.071 3.929 11 N -0.828 5.828 12 Si 0.860 3.140 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.253 1.253 16 C 0.147 3.853 17 C -0.007 4.007 18 C -0.113 4.113 19 C -0.039 4.039 20 C -0.093 4.093 21 N 0.037 4.963 22 O -0.169 6.169 23 O -0.158 6.158 24 C 0.166 3.834 25 F -0.106 7.106 26 C -0.121 4.121 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.281 0.719 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 8.933 2.169 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.857 5.857 3 C -0.059 4.059 4 S 2.719 3.281 5 O -0.963 6.963 6 O -0.994 6.994 7 N -0.674 5.674 8 C -0.432 4.432 9 H 0.138 0.862 10 C -0.143 4.143 11 N -0.463 5.463 12 Si 0.687 3.313 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.177 1.177 16 C 0.020 3.980 17 C -0.010 4.010 18 C -0.132 4.132 19 C -0.058 4.058 20 C -0.179 4.179 21 N 0.555 4.445 22 O -0.382 6.382 23 O -0.374 6.374 24 C 0.144 3.856 25 F -0.084 7.084 26 C -0.141 4.141 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.856 8.917 2.912 10.142 hybrid contribution 0.012 0.660 -1.049 1.239 sum 3.868 9.577 1.863 10.495 Atomic orbital electron populations 1.21384 0.79765 1.03676 1.00395 1.58524 1.14819 1.22362 1.90024 1.21405 0.97042 0.86532 1.00946 1.06783 0.72687 0.73034 0.75554 1.93476 1.64766 1.57852 1.80165 1.93393 1.43907 1.85727 1.76349 1.53856 1.24861 1.56169 1.32557 1.19092 1.24109 1.06662 0.93289 0.86211 1.25633 0.94941 0.97226 0.96498 1.69866 1.39238 1.31081 1.06111 0.87201 0.78102 0.86044 0.79986 1.19597 1.20785 1.17681 1.20508 0.83378 0.93352 1.00760 1.20657 0.93453 0.95173 0.91717 1.21516 0.93018 0.99915 0.98751 1.20928 0.98008 0.90675 0.96183 1.21237 0.95273 0.98700 1.02661 1.43374 1.00824 1.00653 0.99693 1.94499 1.38983 1.79246 1.25472 1.94586 1.78623 1.29935 1.34264 1.17352 0.94412 0.88376 0.85412 1.91643 1.94877 1.60942 1.60943 1.21331 0.96445 0.93772 1.02598 0.89493 0.93471 0.93143 0.93708 0.92100 0.90488 0.90817 0.89518 0.90069 0.81657 0.82344 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.71 59.85 0.64 2.05 16 2 N -1.02 -16.78 3.64 -129.20 -0.47 -17.25 16 3 C 0.09 1.13 10.74 59.85 0.64 1.77 16 4 S 2.70 52.82 6.00 -107.50 -0.64 52.17 16 5 O -0.98 -22.60 15.47 -57.17 -0.88 -23.48 16 6 O -1.01 -19.29 14.13 -57.17 -0.81 -20.10 16 7 N -0.85 -16.73 2.52 -61.08 -0.15 -16.88 16 8 C -0.29 -6.60 9.48 -15.06 -0.14 -6.75 16 9 H 0.12 3.10 7.59 -52.49 -0.40 2.70 16 10 C 0.07 1.59 5.30 -17.43 -0.09 1.50 16 11 N -0.83 -19.89 13.97 55.49 0.78 -19.11 16 12 Si 0.86 16.46 25.15 -169.99 -4.27 12.19 16 13 H -0.27 -4.80 6.65 56.52 0.38 -4.43 16 14 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.25 -4.58 7.11 56.52 0.40 -4.18 16 16 C 0.15 2.46 4.44 -5.19 -0.02 2.44 16 17 C -0.01 -0.11 5.43 -104.63 -0.57 -0.68 16 18 C -0.11 -1.64 9.19 -39.58 -0.36 -2.01 16 19 C -0.04 -0.55 9.55 -39.59 -0.38 -0.93 16 20 C -0.09 -1.53 6.86 -79.89 -0.55 -2.08 16 21 N 0.04 0.65 4.45 33.99 0.15 0.80 16 22 O -0.17 -2.87 18.45 -29.46 -0.54 -3.41 16 23 O -0.16 -2.93 17.42 -29.46 -0.51 -3.44 16 24 C 0.17 2.81 7.25 -39.41 -0.29 2.53 16 25 F -0.11 -1.88 15.48 2.25 0.03 -1.85 16 26 C -0.12 -2.04 9.69 -39.51 -0.38 -2.43 16 27 H 0.09 1.44 6.82 -51.93 -0.35 1.09 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.08 0.96 6.97 -51.93 -0.36 0.60 16 33 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 34 H 0.09 1.19 7.64 -51.93 -0.40 0.79 16 35 H 0.08 1.38 3.07 -51.93 -0.16 1.22 16 36 H 0.17 2.24 6.82 -52.48 -0.36 1.88 16 37 H 0.16 1.88 7.61 -52.49 -0.40 1.48 16 38 H 0.17 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -27.29 341.63 -7.39 -34.67 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.70 Total: 5.13 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.50 Total: -4.58 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.30 Total: -52.45 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -2.75 Total: -50.43 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -4.27 Total: 12.19 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.64 Total: 52.17 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.29 -7.39 -34.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842650672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.199 kcal (2) G-P(sol) polarization free energy of solvation -27.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds