Wall clock time and date at job start Wed Apr 1 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99742 * 2 1 4 4 S 1.65592 * 120.00192 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.40197 * 339.96413 * 4 2 1 6 6 O 1.42097 * 106.40276 * 207.04917 * 4 2 1 7 7 N 1.65594 * 107.22268 * 93.50624 * 4 2 1 8 8 C 1.36936 * 120.00329 * 265.98487 * 7 4 2 9 9 H 1.07999 * 120.00364 * 323.17137 * 8 7 4 10 10 C 1.38814 * 120.00069 * 143.16021 * 8 7 4 11 11 N 1.31621 * 119.99705 * 155.68519 * 10 8 7 12 12 Si 1.86803 * 120.00201 * 335.68499 * 10 8 7 13 13 H 1.48496 * 109.47165 * 95.48918 * 12 10 8 14 14 H 1.48499 * 109.47316 * 215.49107 * 12 10 8 15 15 H 1.48503 * 109.46820 * 335.48870 * 12 10 8 16 16 C 1.46500 * 119.99911 * 85.98479 * 7 4 2 17 17 C 1.50705 * 109.47297 * 95.27890 * 16 7 4 18 18 C 1.38270 * 119.98253 * 267.66326 * 17 16 7 19 19 C 1.38221 * 120.04952 * 179.97438 * 18 17 16 20 20 C 1.38227 * 120.02823 * 359.78075 * 19 18 17 21 21 N 1.47991 * 120.01724 * 180.25370 * 20 19 18 22 22 O 1.21799 * 120.00291 * 0.21537 * 21 20 19 23 23 O 1.21801 * 120.00286 * 180.20960 * 21 20 19 24 24 C 1.38441 * 119.96808 * 0.46998 * 20 19 18 25 25 F 1.35099 * 120.02412 * 179.78882 * 24 20 19 26 26 C 1.38170 * 119.98675 * 87.63214 * 17 16 7 27 27 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47010 * 299.99667 * 1 2 3 29 29 H 1.09004 * 109.47219 * 59.99684 * 1 2 3 30 30 H 1.08998 * 109.47560 * 274.23917 * 3 2 1 31 31 H 1.08992 * 109.47179 * 34.24460 * 3 2 1 32 32 H 1.09001 * 109.46723 * 154.24143 * 3 2 1 33 33 H 0.97000 * 119.99763 * 180.02562 * 11 10 8 34 34 H 1.08990 * 109.47364 * 335.27432 * 16 7 4 35 35 H 1.09005 * 109.47334 * 215.27285 * 16 7 4 36 36 H 1.08003 * 119.97726 * 359.96863 * 18 17 16 37 37 H 1.07996 * 119.98775 * 180.02562 * 19 18 17 38 38 H 1.07992 * 120.02056 * 0.05065 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2930 -1.4340 -0.0006 5 8 1.3845 -2.4221 0.4660 6 8 3.5450 -1.1748 0.6194 7 7 2.6219 -1.8096 -1.5795 8 6 1.7738 -2.6247 -2.2805 9 1 1.2921 -3.4555 -1.7866 10 6 1.5329 -2.3829 -3.6261 11 7 1.1408 -3.3640 -4.4111 12 14 1.7651 -0.6652 -4.3227 13 1 3.1199 -0.5523 -4.9199 14 1 0.7408 -0.4122 -5.3676 15 1 1.6191 0.3342 -3.2341 16 6 3.8204 -1.2697 -2.2265 17 6 4.9372 -2.2776 -2.1363 18 6 5.8256 -2.2316 -1.0778 19 6 6.8501 -3.1556 -0.9934 20 6 6.9848 -4.1297 -1.9649 21 7 8.0785 -5.1224 -1.8713 22 8 8.8578 -5.0836 -0.9361 23 8 8.1992 -5.9782 -2.7295 24 6 6.0989 -4.1735 -3.0278 25 9 6.2321 -5.1224 -3.9802 26 6 5.0724 -3.2476 -3.1109 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.3133 1.6215 -1.0248 31 1 1.6434 2.0082 0.5782 32 1 3.1807 1.1207 0.4466 33 1 0.9729 -3.1951 -5.3514 34 1 4.1203 -0.3493 -1.7257 35 1 3.6044 -1.0596 -3.2741 36 1 5.7192 -1.4730 -0.3165 37 1 7.5433 -3.1190 -0.1661 38 1 4.3785 -3.2832 -3.9377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842650672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:30 Heat of formation + Delta-G solvation = -90.030520 kcal Electronic energy + Delta-G solvation = -29762.296721 eV Core-core repulsion = 25264.030288 eV Total energy + Delta-G solvation = -4498.266434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.083 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.42838 -43.32378 -40.73228 -38.15284 -37.79327 -37.72210 -36.85588 -36.64515 -34.29598 -33.12140 -32.08852 -29.22619 -28.83029 -26.71254 -25.66450 -25.25779 -24.40181 -23.11596 -20.58156 -20.28826 -19.94903 -19.37197 -18.86363 -18.84161 -18.34572 -18.05198 -17.75782 -17.33025 -16.99688 -16.72236 -16.08192 -15.53597 -15.44771 -15.31602 -15.02407 -14.80123 -14.60506 -14.11061 -14.00961 -13.76495 -13.56449 -13.43706 -13.19142 -13.08674 -12.94006 -12.83199 -12.78770 -12.67787 -12.45479 -12.38915 -12.34954 -12.29570 -12.13211 -11.86113 -10.98256 -10.69490 -10.26039 -10.19742 -9.86879 -8.49522 -6.12645 -1.42915 -0.28054 -0.20758 0.12583 0.16763 1.24712 1.40979 1.49021 1.92450 2.20202 2.22946 2.49442 2.74056 2.83710 3.12417 3.31843 3.53519 3.57152 3.84464 3.96674 4.04869 4.12736 4.38194 4.39651 4.54444 4.56718 4.63241 4.66765 4.79784 4.92680 4.98794 5.00192 5.05348 5.14863 5.19677 5.36596 5.56803 5.80439 6.23549 6.39664 6.97212 7.04332 8.62865 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004723 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.988598 B = 5927.044575 C = 7134.801688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.022 6.022 3 C 0.075 3.925 4 S 2.739 3.261 5 O -1.018 7.018 6 O -0.999 6.999 7 N -0.859 5.859 8 C -0.309 4.309 9 H 0.067 0.933 10 C 0.036 3.964 11 N -0.888 5.888 12 Si 0.910 3.090 13 H -0.249 1.249 14 H -0.295 1.295 15 H -0.227 1.227 16 C 0.135 3.865 17 C -0.013 4.013 18 C -0.103 4.103 19 C -0.022 4.022 20 C -0.100 4.100 21 N 0.036 4.964 22 O -0.137 6.137 23 O -0.203 6.203 24 C 0.151 3.849 25 F -0.118 7.118 26 C -0.129 4.129 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.280 0.720 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.188 0.812 37 H 0.192 0.808 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 12.875 4.391 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.862 5.862 3 C -0.070 4.070 4 S 2.757 3.243 5 O -1.003 7.003 6 O -0.983 6.983 7 N -0.689 5.689 8 C -0.445 4.445 9 H 0.085 0.915 10 C -0.172 4.172 11 N -0.525 5.525 12 Si 0.733 3.267 13 H -0.174 1.174 14 H -0.223 1.223 15 H -0.149 1.149 16 C 0.009 3.991 17 C -0.016 4.016 18 C -0.122 4.122 19 C -0.041 4.041 20 C -0.186 4.186 21 N 0.552 4.448 22 O -0.360 6.360 23 O -0.408 6.408 24 C 0.130 3.870 25 F -0.096 7.096 26 C -0.149 4.149 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.205 0.795 37 H 0.209 0.791 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.202 12.774 4.976 14.662 hybrid contribution -0.335 -0.431 -1.391 1.494 sum 4.867 12.343 3.585 13.744 Atomic orbital electron populations 1.21539 0.78620 1.02840 1.02811 1.58040 1.15654 1.22639 1.89854 1.21766 0.97410 0.85030 1.02752 1.04261 0.72514 0.73067 0.74461 1.93455 1.66181 1.59884 1.80740 1.93417 1.43302 1.85865 1.75720 1.53624 1.25973 1.57580 1.31770 1.18423 1.25083 1.07276 0.93755 0.91517 1.26087 0.94587 1.00285 0.96268 1.69984 1.42950 1.33195 1.06374 0.86412 0.78592 0.82017 0.79695 1.17443 1.22259 1.14908 1.20842 0.82343 0.94738 1.01190 1.20780 0.93956 0.94870 0.92041 1.21728 0.92184 1.00085 0.98213 1.21311 0.97908 0.89015 0.95867 1.21408 0.94940 0.99077 1.03144 1.43509 1.01011 1.00723 0.99551 1.94460 1.38429 1.78461 1.24700 1.94610 1.79713 1.31258 1.35190 1.17493 0.95101 0.88549 0.85843 1.91608 1.95008 1.61458 1.61514 1.21256 0.96318 0.94471 1.02898 0.92053 0.90252 0.91545 0.92147 0.89135 0.89679 0.91002 0.85516 0.90213 0.79509 0.79094 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.35 10.71 127.77 1.37 3.72 16 2 N -1.02 -29.60 3.64 -562.69 -2.05 -31.65 16 3 C 0.08 1.51 10.74 127.77 1.37 2.88 16 4 S 2.74 101.15 6.00 -56.49 -0.34 100.82 16 5 O -1.02 -46.99 15.47 -128.00 -1.98 -48.97 16 6 O -1.00 -34.09 14.13 -128.00 -1.81 -35.90 16 7 N -0.86 -33.11 2.52 -347.17 -0.87 -33.98 16 8 C -0.31 -14.62 9.48 84.03 0.80 -13.82 16 9 H 0.07 3.77 7.59 -2.91 -0.02 3.75 16 10 C 0.04 1.68 5.30 84.86 0.45 2.13 16 11 N -0.89 -45.66 13.97 21.65 0.30 -45.36 16 12 Si 0.91 33.29 25.15 68.60 1.73 35.01 16 13 H -0.25 -8.19 6.65 99.48 0.66 -7.53 16 14 H -0.30 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.23 -7.21 7.11 99.48 0.71 -6.51 16 16 C 0.13 4.18 4.44 85.63 0.38 4.56 16 17 C -0.01 -0.41 5.43 -19.87 -0.11 -0.52 16 18 C -0.10 -2.65 9.19 22.27 0.20 -2.45 16 19 C -0.02 -0.56 9.55 22.26 0.21 -0.35 16 20 C -0.10 -3.18 6.86 36.43 0.25 -2.93 16 21 N 0.04 1.23 4.45 -46.37 -0.21 1.02 16 22 O -0.14 -4.34 18.45 18.89 0.35 -3.99 16 23 O -0.20 -7.65 17.42 18.89 0.33 -7.33 16 24 C 0.15 5.22 7.25 22.38 0.16 5.38 16 25 F -0.12 -4.40 15.48 44.97 0.70 -3.70 16 26 C -0.13 -4.42 9.69 22.31 0.22 -4.20 16 27 H 0.06 1.98 6.82 -2.39 -0.02 1.97 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 32 H 0.08 1.60 6.97 -2.39 -0.02 1.59 16 33 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.13 2.85 7.64 -2.39 -0.02 2.83 16 35 H 0.08 2.53 3.07 -2.38 -0.01 2.52 16 36 H 0.19 4.07 6.82 -2.91 -0.02 4.05 16 37 H 0.19 3.59 7.61 -2.91 -0.02 3.57 16 38 H 0.15 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -62.85 341.63 2.53 -60.32 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.08 Total: 19.30 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.30 Total: -5.58 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -2.83 Total: -109.98 kcal Atomic # 8 Polarization: -93.07 SS G_CDS: -3.11 Total: -96.19 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.70 Total: -3.70 kcal Atomic # 14 Polarization: 33.29 SS G_CDS: 1.73 Total: 35.01 kcal Atomic # 16 Polarization: 101.15 SS G_CDS: -0.34 Total: 100.82 kcal Total: -62.85 2.53 -60.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842650672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.714 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds