Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47410 * 270.01036 * 3 2 1 5 5 H 1.48510 * 109.46834 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.47496 * 150.00130 * 3 2 1 7 7 C 1.37878 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00190 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99982 * 179.97438 * 7 2 1 10 10 S 1.81401 * 109.47195 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54330 * 68.37290 * 10 9 7 12 12 O 1.42095 * 110.54194 * 291.61976 * 10 9 7 13 13 N 1.65599 * 104.45001 * 179.97438 * 10 9 7 14 14 C 1.34783 * 119.99897 * 64.99933 * 13 10 9 15 15 O 1.21273 * 119.99849 * 359.97438 * 14 13 10 16 16 C 1.50696 * 119.99737 * 179.97438 * 14 13 10 17 17 C 1.53006 * 109.47079 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47294 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 16 20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17 21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18 22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18 23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19 24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20 25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17 26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18 27 27 H 0.96999 * 120.00276 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47386 * 59.99504 * 9 7 2 29 29 H 1.09000 * 109.46929 * 299.99340 * 9 7 2 30 30 H 0.96999 * 120.00344 * 245.00412 * 13 10 9 31 31 H 1.08999 * 109.47479 * 60.00288 * 16 14 13 32 32 H 1.08994 * 109.47373 * 299.99615 * 16 14 13 33 33 H 1.09008 * 109.46613 * 60.00213 * 17 16 14 34 34 H 1.08994 * 109.47241 * 300.00894 * 17 16 14 35 35 H 1.09008 * 109.46866 * 60.00674 * 18 17 16 36 36 H 1.09006 * 109.47655 * 300.00535 * 18 17 16 37 37 H 1.08001 * 119.98752 * 179.97438 * 22 20 19 38 38 H 1.08000 * 119.97200 * 180.02562 * 23 22 20 39 39 H 1.07995 * 119.99247 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 8 3.8196 -3.5382 -1.2377 12 8 3.8207 -3.5376 1.2363 13 7 5.7658 -2.7594 -0.0024 14 6 6.3948 -2.2085 1.0548 15 8 5.7526 -1.8187 2.0068 16 6 7.8960 -2.0772 1.0538 17 6 8.3517 -1.4240 2.3602 18 6 9.8759 -1.2912 2.3595 19 6 10.3248 -0.6485 3.6465 20 6 10.6256 -1.4349 4.7452 21 9 10.5113 -2.7787 4.6661 22 6 11.0385 -0.8432 5.9272 23 6 11.1497 0.5318 6.0103 24 6 10.8496 1.3180 4.9139 25 6 10.4370 0.7285 3.7307 26 9 10.1436 1.4972 2.6592 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8744 -0.6801 -0.8912 30 1 6.2795 -3.0708 -0.7640 31 1 8.2061 -1.4588 0.2114 32 1 8.3472 -3.0653 0.9646 33 1 8.0417 -2.0421 3.2029 34 1 7.9005 -0.4359 2.4491 35 1 10.1863 -0.6733 1.5168 36 1 10.3268 -2.2797 2.2708 37 1 11.2729 -1.4566 6.7847 38 1 11.4722 0.9923 6.9324 39 1 10.9364 2.3924 4.9801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847707085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = -191.408298 kcal Electronic energy + Delta-G solvation = -27613.989151 eV Core-core repulsion = 23091.406685 eV Total energy + Delta-G solvation = -4522.582466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.34700 -49.34181 -40.00407 -39.28018 -36.37499 -35.43515 -35.26531 -34.22728 -33.25250 -31.69429 -30.70182 -29.81257 -27.63310 -23.83397 -23.27722 -23.05632 -21.75720 -20.88142 -19.23901 -18.53824 -17.80659 -17.75974 -17.42878 -16.59606 -16.39777 -16.21650 -16.19661 -15.94478 -15.61961 -15.44142 -14.83120 -14.78173 -14.59600 -14.23565 -14.11768 -13.89803 -13.15587 -13.05022 -12.72217 -12.66354 -12.51272 -12.36690 -12.04587 -12.02482 -11.94547 -11.66468 -11.40533 -11.39251 -11.30003 -10.97612 -10.86171 -10.65878 -10.33731 -10.04542 -9.86169 -9.41136 -9.25817 -9.17072 -8.82946 -6.31542 -4.40797 0.54258 0.54627 0.87714 2.27552 2.91094 3.08883 3.15821 3.24669 3.26568 3.48686 3.99512 4.01898 4.22380 4.22557 4.23812 4.37439 4.47209 4.69630 4.75996 4.79288 4.86209 5.02634 5.10159 5.14129 5.21323 5.29515 5.38329 5.45374 5.48634 5.54508 5.57133 5.71936 5.91027 6.06639 6.17550 6.31854 6.34641 6.86378 7.17532 7.66033 7.99782 8.58854 9.23256 10.79431 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002783 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.711686 B =10057.677616 C =11322.241124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.090 3.910 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.533 4.533 8 H 0.087 0.913 9 C -0.459 4.459 10 S 2.579 3.421 11 O -0.961 6.961 12 O -0.944 6.944 13 N -1.063 6.063 14 C 0.530 3.470 15 O -0.488 6.488 16 C -0.141 4.141 17 C -0.106 4.106 18 C -0.081 4.081 19 C -0.151 4.151 20 C 0.132 3.868 21 F -0.127 7.127 22 C -0.163 4.163 23 C -0.066 4.066 24 C -0.163 4.163 25 C 0.132 3.868 26 F -0.127 7.127 27 H 0.272 0.728 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.426 0.574 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.686 1.637 7.365 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.116 4.116 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.105 0.895 9 C -0.595 4.595 10 S 2.679 3.321 11 O -0.952 6.952 12 O -0.934 6.934 13 N -0.824 5.824 14 C 0.316 3.684 15 O -0.359 6.359 16 C -0.183 4.183 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.153 4.153 20 C 0.112 3.888 21 F -0.106 7.106 22 C -0.182 4.182 23 C -0.084 4.084 24 C -0.182 4.182 25 C 0.112 3.888 26 F -0.105 7.105 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.261 0.739 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 27.584 1.151 8.048 28.757 hybrid contribution 0.659 1.236 -0.678 1.556 sum 28.243 2.387 7.370 29.286 Atomic orbital electron populations 1.69858 1.06273 1.27861 1.47487 1.24854 0.94741 0.99157 0.92888 0.86735 0.80685 0.82929 0.78950 1.19585 1.20475 1.18570 1.20029 0.84759 0.96391 1.55992 0.89516 1.28104 1.08605 1.16462 1.06307 1.06267 0.71650 0.80018 0.74163 1.93541 1.81332 1.74954 1.45377 1.93549 1.81030 1.74093 1.44772 1.55545 1.31316 1.68785 1.26735 1.20617 0.91711 0.75089 0.81002 1.90915 1.67904 1.44596 1.32473 1.21795 0.91411 1.04144 1.00957 1.21392 0.93234 1.02721 0.97036 1.20529 0.96483 1.01495 0.93326 1.19884 1.05364 0.92447 0.97587 1.17219 1.00270 0.77323 0.93960 1.91537 1.93405 1.28940 1.96676 1.21239 1.03613 0.96056 0.97290 1.20854 0.96843 0.92376 0.98372 1.21245 1.03188 1.01703 0.92050 1.17224 0.99589 0.87470 0.84477 1.91539 1.90652 1.74574 1.53772 0.91794 0.88508 0.90182 0.73930 0.87767 0.87846 0.90357 0.90379 0.89746 0.89759 0.83962 0.83907 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.09 2.60 5.47 -17.82 -0.10 2.51 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.53 -15.26 9.68 -34.44 -0.33 -15.60 16 8 H 0.09 2.66 7.96 -52.49 -0.42 2.24 16 9 C -0.46 -10.73 4.71 36.01 0.17 -10.56 16 10 S 2.58 54.01 5.03 -107.50 -0.54 53.47 16 11 O -0.96 -21.47 18.08 -57.54 -1.04 -22.51 16 12 O -0.94 -23.21 17.04 -64.78 -1.10 -24.32 16 13 N -1.06 -15.41 5.60 31.22 0.17 -15.24 16 14 C 0.53 7.82 7.57 -10.98 -0.08 7.74 16 15 O -0.49 -9.47 14.08 -11.55 -0.16 -9.63 16 16 C -0.14 -1.31 5.70 -27.88 -0.16 -1.47 16 17 C -0.11 -1.10 4.49 -26.73 -0.12 -1.22 16 18 C -0.08 -0.67 4.99 -27.89 -0.14 -0.81 16 19 C -0.15 -1.37 5.15 -104.49 -0.54 -1.91 16 20 C 0.13 1.16 7.24 -39.42 -0.29 0.88 16 21 F -0.13 -1.24 16.48 2.25 0.04 -1.20 16 22 C -0.16 -1.11 10.03 -39.50 -0.40 -1.50 16 23 C -0.07 -0.38 10.04 -39.60 -0.40 -0.78 16 24 C -0.16 -1.13 10.03 -39.50 -0.40 -1.52 16 25 C 0.13 1.18 7.24 -39.43 -0.29 0.90 16 26 F -0.13 -1.27 16.48 2.25 0.04 -1.24 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.10 2.26 6.25 -51.92 -0.32 1.94 16 29 H 0.08 1.65 7.57 -51.92 -0.39 1.26 16 30 H 0.43 4.15 8.79 -34.47 -0.30 3.85 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.93 8.10 -51.92 -0.42 0.51 16 34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.08 0.61 7.64 -51.92 -0.40 0.21 16 36 H 0.08 0.60 7.64 -51.93 -0.40 0.20 16 37 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -38.07 358.11 -8.51 -46.58 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.35 Total: 1.46 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -3.06 Total: -23.35 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.95 Total: -41.00 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -2.31 Total: -56.46 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.07 Total: -2.44 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 54.01 SS G_CDS: -0.54 Total: 53.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.07 -8.51 -46.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847707085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.831 kcal (2) G-P(sol) polarization free energy of solvation -38.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds