Wall clock time and date at job start Wed Apr 1 2020 04:31:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86796 * 120.00228 * 2 1
4 4 H 1.48503 * 109.47410 * 270.01036 * 3 2 1
5 5 H 1.48510 * 109.46834 * 30.00148 * 3 2 1
6 6 H 1.48498 * 109.47496 * 150.00130 * 3 2 1
7 7 C 1.37878 * 119.99994 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00190 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99982 * 179.97438 * 7 2 1
10 10 S 1.81401 * 109.47195 * 179.97438 * 9 7 2
11 11 O 1.42101 * 110.54330 * 68.37290 * 10 9 7
12 12 O 1.42095 * 110.54194 * 291.61976 * 10 9 7
13 13 N 1.65599 * 104.45001 * 179.97438 * 10 9 7
14 14 C 1.34783 * 119.99897 * 64.99933 * 13 10 9
15 15 O 1.21273 * 119.99849 * 359.97438 * 14 13 10
16 16 C 1.50696 * 119.99737 * 179.97438 * 14 13 10
17 17 C 1.53006 * 109.47079 * 179.97438 * 16 14 13
18 18 C 1.52994 * 109.47294 * 179.97438 * 17 16 14
19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 16
20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17
21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18
22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18
23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19
24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20
25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17
26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18
27 27 H 0.96999 * 120.00276 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.47386 * 59.99504 * 9 7 2
29 29 H 1.09000 * 109.46929 * 299.99340 * 9 7 2
30 30 H 0.96999 * 120.00344 * 245.00412 * 13 10 9
31 31 H 1.08999 * 109.47479 * 60.00288 * 16 14 13
32 32 H 1.08994 * 109.47373 * 299.99615 * 16 14 13
33 33 H 1.09008 * 109.46613 * 60.00213 * 17 16 14
34 34 H 1.08994 * 109.47241 * 300.00894 * 17 16 14
35 35 H 1.09008 * 109.46866 * 60.00674 * 18 17 16
36 36 H 1.09006 * 109.47655 * 300.00535 * 18 17 16
37 37 H 1.08001 * 119.98752 * 179.97438 * 22 20 19
38 38 H 1.08000 * 119.97200 * 180.02562 * 23 22 20
39 39 H 1.07995 * 119.99247 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 16 4.1162 -2.9043 -0.0010
11 8 3.8196 -3.5382 -1.2377
12 8 3.8207 -3.5376 1.2363
13 7 5.7658 -2.7594 -0.0024
14 6 6.3948 -2.2085 1.0548
15 8 5.7526 -1.8187 2.0068
16 6 7.8960 -2.0772 1.0538
17 6 8.3517 -1.4240 2.3602
18 6 9.8759 -1.2912 2.3595
19 6 10.3248 -0.6485 3.6465
20 6 10.6256 -1.4349 4.7452
21 9 10.5113 -2.7787 4.6661
22 6 11.0385 -0.8432 5.9272
23 6 11.1497 0.5318 6.0103
24 6 10.8496 1.3180 4.9139
25 6 10.4370 0.7285 3.7307
26 9 10.1436 1.4972 2.6592
27 1 -0.4850 0.8400 0.0004
28 1 3.8752 -0.6804 0.8888
29 1 3.8744 -0.6801 -0.8912
30 1 6.2795 -3.0708 -0.7640
31 1 8.2061 -1.4588 0.2114
32 1 8.3472 -3.0653 0.9646
33 1 8.0417 -2.0421 3.2029
34 1 7.9005 -0.4359 2.4491
35 1 10.1863 -0.6733 1.5168
36 1 10.3268 -2.2797 2.2708
37 1 11.2729 -1.4566 6.7847
38 1 11.4722 0.9923 6.9324
39 1 10.9364 2.3924 4.9801
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000847707085.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:14
Heat of formation + Delta-G solvation = -191.408298 kcal
Electronic energy + Delta-G solvation = -27613.989151 eV
Core-core repulsion = 23091.406685 eV
Total energy + Delta-G solvation = -4522.582466 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.084 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-49.34700 -49.34181 -40.00407 -39.28018 -36.37499 -35.43515 -35.26531 -34.22728
-33.25250 -31.69429 -30.70182 -29.81257 -27.63310 -23.83397 -23.27722 -23.05632
-21.75720 -20.88142 -19.23901 -18.53824 -17.80659 -17.75974 -17.42878 -16.59606
-16.39777 -16.21650 -16.19661 -15.94478 -15.61961 -15.44142 -14.83120 -14.78173
-14.59600 -14.23565 -14.11768 -13.89803 -13.15587 -13.05022 -12.72217 -12.66354
-12.51272 -12.36690 -12.04587 -12.02482 -11.94547 -11.66468 -11.40533 -11.39251
-11.30003 -10.97612 -10.86171 -10.65878 -10.33731 -10.04542 -9.86169 -9.41136
-9.25817 -9.17072 -8.82946 -6.31542 -4.40797 0.54258 0.54627 0.87714
2.27552 2.91094 3.08883 3.15821 3.24669 3.26568 3.48686 3.99512
4.01898 4.22380 4.22557 4.23812 4.37439 4.47209 4.69630 4.75996
4.79288 4.86209 5.02634 5.10159 5.14129 5.21323 5.29515 5.38329
5.45374 5.48634 5.54508 5.57133 5.71936 5.91027 6.06639 6.17550
6.31854 6.34641 6.86378 7.17532 7.66033 7.99782 8.58854 9.23256
10.79431
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.013288 B = 0.002783 C = 0.002472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2106.711686 B =10057.677616 C =11322.241124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.879 5.879
2 C 0.090 3.910
3 Si 0.881 3.119
4 H -0.270 1.270
5 H -0.279 1.279
6 H -0.261 1.261
7 C -0.533 4.533
8 H 0.087 0.913
9 C -0.459 4.459
10 S 2.579 3.421
11 O -0.961 6.961
12 O -0.944 6.944
13 N -1.063 6.063
14 C 0.530 3.470
15 O -0.488 6.488
16 C -0.141 4.141
17 C -0.106 4.106
18 C -0.081 4.081
19 C -0.151 4.151
20 C 0.132 3.868
21 F -0.127 7.127
22 C -0.163 4.163
23 C -0.066 4.066
24 C -0.163 4.163
25 C 0.132 3.868
26 F -0.127 7.127
27 H 0.272 0.728
28 H 0.097 0.903
29 H 0.080 0.920
30 H 0.426 0.574
31 H 0.104 0.896
32 H 0.103 0.897
33 H 0.078 0.922
34 H 0.077 0.923
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.143 0.857
38 H 0.143 0.857
39 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.686 1.637 7.365 29.662
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.515 5.515
2 C -0.116 4.116
3 Si 0.707 3.293
4 H -0.196 1.196
5 H -0.205 1.205
6 H -0.186 1.186
7 C -0.572 4.572
8 H 0.105 0.895
9 C -0.595 4.595
10 S 2.679 3.321
11 O -0.952 6.952
12 O -0.934 6.934
13 N -0.824 5.824
14 C 0.316 3.684
15 O -0.359 6.359
16 C -0.183 4.183
17 C -0.144 4.144
18 C -0.118 4.118
19 C -0.153 4.153
20 C 0.112 3.888
21 F -0.106 7.106
22 C -0.182 4.182
23 C -0.084 4.084
24 C -0.182 4.182
25 C 0.112 3.888
26 F -0.105 7.105
27 H 0.082 0.918
28 H 0.115 0.885
29 H 0.098 0.902
30 H 0.261 0.739
31 H 0.122 0.878
32 H 0.122 0.878
33 H 0.096 0.904
34 H 0.096 0.904
35 H 0.103 0.897
36 H 0.102 0.898
37 H 0.160 0.840
38 H 0.161 0.839
39 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 27.584 1.151 8.048 28.757
hybrid contribution 0.659 1.236 -0.678 1.556
sum 28.243 2.387 7.370 29.286
Atomic orbital electron populations
1.69858 1.06273 1.27861 1.47487 1.24854 0.94741 0.99157 0.92888
0.86735 0.80685 0.82929 0.78950 1.19585 1.20475 1.18570 1.20029
0.84759 0.96391 1.55992 0.89516 1.28104 1.08605 1.16462 1.06307
1.06267 0.71650 0.80018 0.74163 1.93541 1.81332 1.74954 1.45377
1.93549 1.81030 1.74093 1.44772 1.55545 1.31316 1.68785 1.26735
1.20617 0.91711 0.75089 0.81002 1.90915 1.67904 1.44596 1.32473
1.21795 0.91411 1.04144 1.00957 1.21392 0.93234 1.02721 0.97036
1.20529 0.96483 1.01495 0.93326 1.19884 1.05364 0.92447 0.97587
1.17219 1.00270 0.77323 0.93960 1.91537 1.93405 1.28940 1.96676
1.21239 1.03613 0.96056 0.97290 1.20854 0.96843 0.92376 0.98372
1.21245 1.03188 1.01703 0.92050 1.17224 0.99589 0.87470 0.84477
1.91539 1.90652 1.74574 1.53772 0.91794 0.88508 0.90182 0.73930
0.87767 0.87846 0.90357 0.90379 0.89746 0.89759 0.83962 0.83907
0.83956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.53 13.96 55.43 0.77 -25.76 16
2 C 0.09 2.60 5.47 -17.82 -0.10 2.51 16
3 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16
4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16
7 C -0.53 -15.26 9.68 -34.44 -0.33 -15.60 16
8 H 0.09 2.66 7.96 -52.49 -0.42 2.24 16
9 C -0.46 -10.73 4.71 36.01 0.17 -10.56 16
10 S 2.58 54.01 5.03 -107.50 -0.54 53.47 16
11 O -0.96 -21.47 18.08 -57.54 -1.04 -22.51 16
12 O -0.94 -23.21 17.04 -64.78 -1.10 -24.32 16
13 N -1.06 -15.41 5.60 31.22 0.17 -15.24 16
14 C 0.53 7.82 7.57 -10.98 -0.08 7.74 16
15 O -0.49 -9.47 14.08 -11.55 -0.16 -9.63 16
16 C -0.14 -1.31 5.70 -27.88 -0.16 -1.47 16
17 C -0.11 -1.10 4.49 -26.73 -0.12 -1.22 16
18 C -0.08 -0.67 4.99 -27.89 -0.14 -0.81 16
19 C -0.15 -1.37 5.15 -104.49 -0.54 -1.91 16
20 C 0.13 1.16 7.24 -39.42 -0.29 0.88 16
21 F -0.13 -1.24 16.48 2.25 0.04 -1.20 16
22 C -0.16 -1.11 10.03 -39.50 -0.40 -1.50 16
23 C -0.07 -0.38 10.04 -39.60 -0.40 -0.78 16
24 C -0.16 -1.13 10.03 -39.50 -0.40 -1.52 16
25 C 0.13 1.18 7.24 -39.43 -0.29 0.90 16
26 F -0.13 -1.27 16.48 2.25 0.04 -1.24 16
27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
28 H 0.10 2.26 6.25 -51.92 -0.32 1.94 16
29 H 0.08 1.65 7.57 -51.92 -0.39 1.26 16
30 H 0.43 4.15 8.79 -34.47 -0.30 3.85 16
31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.08 0.93 8.10 -51.92 -0.42 0.51 16
34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16
35 H 0.08 0.61 7.64 -51.92 -0.40 0.21 16
36 H 0.08 0.60 7.64 -51.93 -0.40 0.20 16
37 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16
38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16
39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16
LS Contribution 358.11 15.07 5.40 5.40
Total: -1.00 -38.07 358.11 -8.51 -46.58
By element:
Atomic # 1 Polarization: 5.81 SS G_CDS: -4.35 Total: 1.46 kcal
Atomic # 6 Polarization: -20.29 SS G_CDS: -3.06 Total: -23.35 kcal
Atomic # 7 Polarization: -41.95 SS G_CDS: 0.95 Total: -41.00 kcal
Atomic # 8 Polarization: -54.15 SS G_CDS: -2.31 Total: -56.46 kcal
Atomic # 9 Polarization: -2.51 SS G_CDS: 0.07 Total: -2.44 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal
Atomic # 16 Polarization: 54.01 SS G_CDS: -0.54 Total: 53.47 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -38.07 -8.51 -46.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000847707085.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -144.831 kcal
(2) G-P(sol) polarization free energy of solvation -38.067 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.897 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) -191.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds