Wall clock time and date at job start Wed Apr 1 2020 04:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47410 * 270.01036 * 3 2 1 5 5 H 1.48510 * 109.46834 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.47496 * 150.00130 * 3 2 1 7 7 C 1.37878 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00190 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99982 * 179.97438 * 7 2 1 10 10 S 1.81401 * 109.47195 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.54330 * 68.37290 * 10 9 7 12 12 O 1.42095 * 110.54194 * 291.61976 * 10 9 7 13 13 N 1.65599 * 104.45001 * 179.97438 * 10 9 7 14 14 C 1.34783 * 119.99897 * 64.99933 * 13 10 9 15 15 O 1.21273 * 119.99849 * 359.97438 * 14 13 10 16 16 C 1.50696 * 119.99737 * 179.97438 * 14 13 10 17 17 C 1.53006 * 109.47079 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47294 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 16 20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17 21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18 22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18 23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19 24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20 25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17 26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18 27 27 H 0.96999 * 120.00276 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47386 * 59.99504 * 9 7 2 29 29 H 1.09000 * 109.46929 * 299.99340 * 9 7 2 30 30 H 0.96999 * 120.00344 * 245.00412 * 13 10 9 31 31 H 1.08999 * 109.47479 * 60.00288 * 16 14 13 32 32 H 1.08994 * 109.47373 * 299.99615 * 16 14 13 33 33 H 1.09008 * 109.46613 * 60.00213 * 17 16 14 34 34 H 1.08994 * 109.47241 * 300.00894 * 17 16 14 35 35 H 1.09008 * 109.46866 * 60.00674 * 18 17 16 36 36 H 1.09006 * 109.47655 * 300.00535 * 18 17 16 37 37 H 1.08001 * 119.98752 * 179.97438 * 22 20 19 38 38 H 1.08000 * 119.97200 * 180.02562 * 23 22 20 39 39 H 1.07995 * 119.99247 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1162 -2.9043 -0.0010 11 8 3.8196 -3.5382 -1.2377 12 8 3.8207 -3.5376 1.2363 13 7 5.7658 -2.7594 -0.0024 14 6 6.3948 -2.2085 1.0548 15 8 5.7526 -1.8187 2.0068 16 6 7.8960 -2.0772 1.0538 17 6 8.3517 -1.4240 2.3602 18 6 9.8759 -1.2912 2.3595 19 6 10.3248 -0.6485 3.6465 20 6 10.6256 -1.4349 4.7452 21 9 10.5113 -2.7787 4.6661 22 6 11.0385 -0.8432 5.9272 23 6 11.1497 0.5318 6.0103 24 6 10.8496 1.3180 4.9139 25 6 10.4370 0.7285 3.7307 26 9 10.1436 1.4972 2.6592 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8744 -0.6801 -0.8912 30 1 6.2795 -3.0708 -0.7640 31 1 8.2061 -1.4588 0.2114 32 1 8.3472 -3.0653 0.9646 33 1 8.0417 -2.0421 3.2029 34 1 7.9005 -0.4359 2.4491 35 1 10.1863 -0.6733 1.5168 36 1 10.3268 -2.2797 2.2708 37 1 11.2729 -1.4566 6.7847 38 1 11.4722 0.9923 6.9324 39 1 10.9364 2.3924 4.9801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847707085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:13 Heat of formation + Delta-G solvation = -219.513017 kcal Electronic energy + Delta-G solvation = -27615.207863 eV Core-core repulsion = 23091.406685 eV Total energy + Delta-G solvation = -4523.801178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.00009 -49.99689 -41.22862 -39.84354 -38.16148 -37.09519 -36.13988 -35.59510 -35.36271 -32.37754 -31.84729 -31.23598 -28.35379 -25.21866 -24.57832 -23.84376 -22.55763 -21.80450 -20.76549 -19.63745 -19.15682 -18.74654 -18.37574 -18.32296 -17.66376 -17.05172 -16.86146 -16.80167 -16.55480 -16.46660 -16.28245 -16.13741 -15.67573 -15.38839 -15.18776 -14.76362 -14.59189 -14.36790 -13.98747 -13.72617 -13.65601 -13.44839 -13.27202 -13.21825 -13.14480 -12.90603 -12.67813 -12.64211 -12.61636 -12.35417 -12.04803 -12.02211 -11.91802 -11.69172 -11.35698 -11.21110 -10.96819 -9.83084 -9.73736 -8.49399 -6.66091 -0.82528 -0.01282 0.00308 1.08999 1.28230 1.32978 1.43860 1.63772 2.23634 2.38817 2.70818 2.82201 2.91441 3.14739 3.39560 3.44310 3.46435 3.68848 3.87729 3.96331 4.08140 4.11477 4.24988 4.36170 4.43698 4.47759 4.55425 4.67601 4.72258 4.85372 4.95441 4.98585 5.07046 5.14107 5.21006 5.23785 5.29560 5.76876 5.77487 5.81501 6.37410 6.52356 7.02444 8.65929 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002783 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.711686 B =10057.677616 C =11322.241124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.027 3.973 3 Si 0.949 3.051 4 H -0.246 1.246 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.556 4.556 8 H 0.043 0.957 9 C -0.474 4.474 10 S 2.610 3.390 11 O -0.978 6.978 12 O -0.987 6.987 13 N -1.040 6.040 14 C 0.525 3.475 15 O -0.538 6.538 16 C -0.130 4.130 17 C -0.105 4.105 18 C -0.075 4.075 19 C -0.166 4.166 20 C 0.109 3.891 21 F -0.138 7.138 22 C -0.163 4.163 23 C -0.059 4.059 24 C -0.163 4.163 25 C 0.109 3.891 26 F -0.138 7.138 27 H 0.278 0.722 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.451 0.549 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.452 3.087 7.193 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.170 1.170 5 H -0.200 1.200 6 H -0.168 1.168 7 C -0.595 4.595 8 H 0.061 0.939 9 C -0.608 4.608 10 S 2.709 3.291 11 O -0.969 6.969 12 O -0.977 6.977 13 N -0.807 5.807 14 C 0.314 3.686 15 O -0.412 6.412 16 C -0.171 4.171 17 C -0.143 4.143 18 C -0.112 4.112 19 C -0.168 4.168 20 C 0.089 3.911 21 F -0.116 7.116 22 C -0.182 4.182 23 C -0.077 4.077 24 C -0.182 4.182 25 C 0.090 3.910 26 F -0.116 7.116 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.292 0.708 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.179 0.821 38 H 0.195 0.805 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 31.360 2.578 7.833 32.426 hybrid contribution -0.472 0.714 -0.553 1.019 sum 30.888 3.292 7.279 31.904 Atomic orbital electron populations 1.70000 1.08362 1.29384 1.48900 1.25974 0.95719 1.03678 0.92086 0.85674 0.79688 0.77223 0.80466 1.17020 1.19975 1.16812 1.20298 0.87836 0.95138 1.56233 0.93856 1.28155 1.05297 1.19493 1.07809 1.04973 0.72962 0.78371 0.72829 1.93511 1.82775 1.74801 1.45781 1.93496 1.82895 1.74552 1.46740 1.54926 1.28894 1.68768 1.28134 1.21733 0.93850 0.73339 0.79639 1.90906 1.69218 1.46754 1.34327 1.21951 0.86520 1.06909 1.01712 1.21337 0.94780 1.01247 0.96957 1.20495 0.94647 1.02453 0.93646 1.20026 1.05904 0.92756 0.98136 1.17504 1.01620 0.77024 0.94908 1.91503 1.93676 1.29672 1.96794 1.21580 1.02522 0.96918 0.97138 1.21265 0.95427 0.91828 0.99188 1.21582 1.02122 1.02911 0.91576 1.17501 1.00928 0.87585 0.85028 1.91504 1.90965 1.74770 1.54384 0.91289 0.88268 0.86803 0.70848 0.83718 0.84234 0.92614 0.92365 0.88417 0.88532 0.82087 0.80549 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.96 21.45 0.30 -57.60 16 2 C 0.03 1.60 5.47 84.66 0.46 2.06 16 3 Si 0.95 42.67 27.47 68.60 1.88 44.55 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.56 -32.86 9.68 25.60 0.25 -32.61 16 8 H 0.04 2.83 7.96 -2.91 -0.02 2.80 16 9 C -0.47 -21.96 4.71 71.24 0.34 -21.62 16 10 S 2.61 108.93 5.03 -56.49 -0.28 108.65 16 11 O -0.98 -43.36 18.08 -127.65 -2.31 -45.67 16 12 O -0.99 -49.67 17.04 -120.72 -2.06 -51.73 16 13 N -1.04 -27.78 5.60 -173.54 -0.97 -28.75 16 14 C 0.53 14.44 7.57 87.65 0.66 15.10 16 15 O -0.54 -20.73 14.08 13.35 0.19 -20.54 16 16 C -0.13 -1.96 5.70 29.85 0.17 -1.79 16 17 C -0.10 -2.03 4.49 30.59 0.14 -1.89 16 18 C -0.08 -1.09 4.99 29.85 0.15 -0.95 16 19 C -0.17 -2.85 5.15 -19.78 -0.10 -2.95 16 20 C 0.11 1.81 7.24 22.37 0.16 1.97 16 21 F -0.14 -2.60 16.48 44.97 0.74 -1.86 16 22 C -0.16 -1.90 10.03 22.32 0.22 -1.67 16 23 C -0.06 -0.52 10.04 22.25 0.22 -0.29 16 24 C -0.16 -1.92 10.03 22.32 0.22 -1.69 16 25 C 0.11 1.82 7.24 22.37 0.16 1.98 16 26 F -0.14 -2.61 16.48 44.97 0.74 -1.87 16 27 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 28 H 0.10 4.58 6.25 -2.39 -0.01 4.56 16 29 H 0.11 4.45 7.57 -2.39 -0.02 4.44 16 30 H 0.45 7.17 8.79 -96.74 -0.85 6.32 16 31 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16 34 H 0.06 1.34 8.10 -2.39 -0.02 1.33 16 35 H 0.10 1.14 7.64 -2.38 -0.02 1.12 16 36 H 0.10 1.14 7.64 -2.38 -0.02 1.12 16 37 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -88.09 358.11 1.49 -86.60 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.20 Total: 12.58 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.06 Total: -44.34 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -0.67 Total: -86.35 kcal Atomic # 8 Polarization: -113.77 SS G_CDS: -4.18 Total: -117.95 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 1.48 Total: -3.73 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Atomic # 16 Polarization: 108.93 SS G_CDS: -0.28 Total: 108.65 kcal Total: -88.09 1.49 -86.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847707085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.915 kcal (2) G-P(sol) polarization free energy of solvation -88.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds