Wall clock time and date at job start Wed Apr 1 2020 04:31:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86796 * 120.00228 * 2 1
4 4 H 1.48503 * 109.47410 * 270.01036 * 3 2 1
5 5 H 1.48510 * 109.46834 * 30.00148 * 3 2 1
6 6 H 1.48498 * 109.47496 * 150.00130 * 3 2 1
7 7 C 1.37878 * 119.99994 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00190 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99982 * 179.97438 * 7 2 1
10 10 S 1.81401 * 109.47195 * 179.97438 * 9 7 2
11 11 O 1.42101 * 110.54330 * 68.37290 * 10 9 7
12 12 O 1.42095 * 110.54194 * 291.61976 * 10 9 7
13 13 N 1.65599 * 104.45001 * 179.97438 * 10 9 7
14 14 C 1.34783 * 119.99897 * 64.99933 * 13 10 9
15 15 O 1.21273 * 119.99849 * 359.97438 * 14 13 10
16 16 C 1.50696 * 119.99737 * 179.97438 * 14 13 10
17 17 C 1.53006 * 109.47079 * 179.97438 * 16 14 13
18 18 C 1.52994 * 109.47294 * 179.97438 * 17 16 14
19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 16
20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17
21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18
22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18
23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19
24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20
25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17
26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18
27 27 H 0.96999 * 120.00276 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.47386 * 59.99504 * 9 7 2
29 29 H 1.09000 * 109.46929 * 299.99340 * 9 7 2
30 30 H 0.96999 * 120.00344 * 245.00412 * 13 10 9
31 31 H 1.08999 * 109.47479 * 60.00288 * 16 14 13
32 32 H 1.08994 * 109.47373 * 299.99615 * 16 14 13
33 33 H 1.09008 * 109.46613 * 60.00213 * 17 16 14
34 34 H 1.08994 * 109.47241 * 300.00894 * 17 16 14
35 35 H 1.09008 * 109.46866 * 60.00674 * 18 17 16
36 36 H 1.09006 * 109.47655 * 300.00535 * 18 17 16
37 37 H 1.08001 * 119.98752 * 179.97438 * 22 20 19
38 38 H 1.08000 * 119.97200 * 180.02562 * 23 22 20
39 39 H 1.07995 * 119.99247 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 16 4.1162 -2.9043 -0.0010
11 8 3.8196 -3.5382 -1.2377
12 8 3.8207 -3.5376 1.2363
13 7 5.7658 -2.7594 -0.0024
14 6 6.3948 -2.2085 1.0548
15 8 5.7526 -1.8187 2.0068
16 6 7.8960 -2.0772 1.0538
17 6 8.3517 -1.4240 2.3602
18 6 9.8759 -1.2912 2.3595
19 6 10.3248 -0.6485 3.6465
20 6 10.6256 -1.4349 4.7452
21 9 10.5113 -2.7787 4.6661
22 6 11.0385 -0.8432 5.9272
23 6 11.1497 0.5318 6.0103
24 6 10.8496 1.3180 4.9139
25 6 10.4370 0.7285 3.7307
26 9 10.1436 1.4972 2.6592
27 1 -0.4850 0.8400 0.0004
28 1 3.8752 -0.6804 0.8888
29 1 3.8744 -0.6801 -0.8912
30 1 6.2795 -3.0708 -0.7640
31 1 8.2061 -1.4588 0.2114
32 1 8.3472 -3.0653 0.9646
33 1 8.0417 -2.0421 3.2029
34 1 7.9005 -0.4359 2.4491
35 1 10.1863 -0.6733 1.5168
36 1 10.3268 -2.2797 2.2708
37 1 11.2729 -1.4566 6.7847
38 1 11.4722 0.9923 6.9324
39 1 10.9364 2.3924 4.9801
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000847707085.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:31:13
Heat of formation + Delta-G solvation = -219.513017 kcal
Electronic energy + Delta-G solvation = -27615.207863 eV
Core-core repulsion = 23091.406685 eV
Total energy + Delta-G solvation = -4523.801178 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.084 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-50.00009 -49.99689 -41.22862 -39.84354 -38.16148 -37.09519 -36.13988 -35.59510
-35.36271 -32.37754 -31.84729 -31.23598 -28.35379 -25.21866 -24.57832 -23.84376
-22.55763 -21.80450 -20.76549 -19.63745 -19.15682 -18.74654 -18.37574 -18.32296
-17.66376 -17.05172 -16.86146 -16.80167 -16.55480 -16.46660 -16.28245 -16.13741
-15.67573 -15.38839 -15.18776 -14.76362 -14.59189 -14.36790 -13.98747 -13.72617
-13.65601 -13.44839 -13.27202 -13.21825 -13.14480 -12.90603 -12.67813 -12.64211
-12.61636 -12.35417 -12.04803 -12.02211 -11.91802 -11.69172 -11.35698 -11.21110
-10.96819 -9.83084 -9.73736 -8.49399 -6.66091 -0.82528 -0.01282 0.00308
1.08999 1.28230 1.32978 1.43860 1.63772 2.23634 2.38817 2.70818
2.82201 2.91441 3.14739 3.39560 3.44310 3.46435 3.68848 3.87729
3.96331 4.08140 4.11477 4.24988 4.36170 4.43698 4.47759 4.55425
4.67601 4.72258 4.85372 4.95441 4.98585 5.07046 5.14107 5.21006
5.23785 5.29560 5.76876 5.77487 5.81501 6.37410 6.52356 7.02444
8.65929
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.013288 B = 0.002783 C = 0.002472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2106.711686 B =10057.677616 C =11322.241124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.027 3.973
3 Si 0.949 3.051
4 H -0.246 1.246
5 H -0.275 1.275
6 H -0.245 1.245
7 C -0.556 4.556
8 H 0.043 0.957
9 C -0.474 4.474
10 S 2.610 3.390
11 O -0.978 6.978
12 O -0.987 6.987
13 N -1.040 6.040
14 C 0.525 3.475
15 O -0.538 6.538
16 C -0.130 4.130
17 C -0.105 4.105
18 C -0.075 4.075
19 C -0.166 4.166
20 C 0.109 3.891
21 F -0.138 7.138
22 C -0.163 4.163
23 C -0.059 4.059
24 C -0.163 4.163
25 C 0.109 3.891
26 F -0.138 7.138
27 H 0.278 0.722
28 H 0.099 0.901
29 H 0.114 0.886
30 H 0.451 0.549
31 H 0.145 0.855
32 H 0.140 0.860
33 H 0.055 0.945
34 H 0.058 0.942
35 H 0.097 0.903
36 H 0.096 0.904
37 H 0.162 0.838
38 H 0.177 0.823
39 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 32.452 3.087 7.193 33.383
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.175 4.175
3 Si 0.769 3.231
4 H -0.170 1.170
5 H -0.200 1.200
6 H -0.168 1.168
7 C -0.595 4.595
8 H 0.061 0.939
9 C -0.608 4.608
10 S 2.709 3.291
11 O -0.969 6.969
12 O -0.977 6.977
13 N -0.807 5.807
14 C 0.314 3.686
15 O -0.412 6.412
16 C -0.171 4.171
17 C -0.143 4.143
18 C -0.112 4.112
19 C -0.168 4.168
20 C 0.089 3.911
21 F -0.116 7.116
22 C -0.182 4.182
23 C -0.077 4.077
24 C -0.182 4.182
25 C 0.090 3.910
26 F -0.116 7.116
27 H 0.087 0.913
28 H 0.117 0.883
29 H 0.132 0.868
30 H 0.292 0.708
31 H 0.163 0.837
32 H 0.158 0.842
33 H 0.074 0.926
34 H 0.076 0.924
35 H 0.116 0.884
36 H 0.115 0.885
37 H 0.179 0.821
38 H 0.195 0.805
39 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 31.360 2.578 7.833 32.426
hybrid contribution -0.472 0.714 -0.553 1.019
sum 30.888 3.292 7.279 31.904
Atomic orbital electron populations
1.70000 1.08362 1.29384 1.48900 1.25974 0.95719 1.03678 0.92086
0.85674 0.79688 0.77223 0.80466 1.17020 1.19975 1.16812 1.20298
0.87836 0.95138 1.56233 0.93856 1.28155 1.05297 1.19493 1.07809
1.04973 0.72962 0.78371 0.72829 1.93511 1.82775 1.74801 1.45781
1.93496 1.82895 1.74552 1.46740 1.54926 1.28894 1.68768 1.28134
1.21733 0.93850 0.73339 0.79639 1.90906 1.69218 1.46754 1.34327
1.21951 0.86520 1.06909 1.01712 1.21337 0.94780 1.01247 0.96957
1.20495 0.94647 1.02453 0.93646 1.20026 1.05904 0.92756 0.98136
1.17504 1.01620 0.77024 0.94908 1.91503 1.93676 1.29672 1.96794
1.21580 1.02522 0.96918 0.97138 1.21265 0.95427 0.91828 0.99188
1.21582 1.02122 1.02911 0.91576 1.17501 1.00928 0.87585 0.85028
1.91504 1.90965 1.74770 1.54384 0.91289 0.88268 0.86803 0.70848
0.83718 0.84234 0.92614 0.92365 0.88417 0.88532 0.82087 0.80549
0.82128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.90 13.96 21.45 0.30 -57.60 16
2 C 0.03 1.60 5.47 84.66 0.46 2.06 16
3 Si 0.95 42.67 27.47 68.60 1.88 44.55 16
4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16
5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16
7 C -0.56 -32.86 9.68 25.60 0.25 -32.61 16
8 H 0.04 2.83 7.96 -2.91 -0.02 2.80 16
9 C -0.47 -21.96 4.71 71.24 0.34 -21.62 16
10 S 2.61 108.93 5.03 -56.49 -0.28 108.65 16
11 O -0.98 -43.36 18.08 -127.65 -2.31 -45.67 16
12 O -0.99 -49.67 17.04 -120.72 -2.06 -51.73 16
13 N -1.04 -27.78 5.60 -173.54 -0.97 -28.75 16
14 C 0.53 14.44 7.57 87.65 0.66 15.10 16
15 O -0.54 -20.73 14.08 13.35 0.19 -20.54 16
16 C -0.13 -1.96 5.70 29.85 0.17 -1.79 16
17 C -0.10 -2.03 4.49 30.59 0.14 -1.89 16
18 C -0.08 -1.09 4.99 29.85 0.15 -0.95 16
19 C -0.17 -2.85 5.15 -19.78 -0.10 -2.95 16
20 C 0.11 1.81 7.24 22.37 0.16 1.97 16
21 F -0.14 -2.60 16.48 44.97 0.74 -1.86 16
22 C -0.16 -1.90 10.03 22.32 0.22 -1.67 16
23 C -0.06 -0.52 10.04 22.25 0.22 -0.29 16
24 C -0.16 -1.92 10.03 22.32 0.22 -1.69 16
25 C 0.11 1.82 7.24 22.37 0.16 1.98 16
26 F -0.14 -2.61 16.48 44.97 0.74 -1.87 16
27 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16
28 H 0.10 4.58 6.25 -2.39 -0.01 4.56 16
29 H 0.11 4.45 7.57 -2.39 -0.02 4.44 16
30 H 0.45 7.17 8.79 -96.74 -0.85 6.32 16
31 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16
32 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.05 1.31 8.10 -2.38 -0.02 1.29 16
34 H 0.06 1.34 8.10 -2.39 -0.02 1.33 16
35 H 0.10 1.14 7.64 -2.38 -0.02 1.12 16
36 H 0.10 1.14 7.64 -2.38 -0.02 1.12 16
37 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16
38 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16
39 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16
Total: -1.00 -88.09 358.11 1.49 -86.60
By element:
Atomic # 1 Polarization: 12.37 SS G_CDS: 0.20 Total: 12.58 kcal
Atomic # 6 Polarization: -47.40 SS G_CDS: 3.06 Total: -44.34 kcal
Atomic # 7 Polarization: -85.68 SS G_CDS: -0.67 Total: -86.35 kcal
Atomic # 8 Polarization: -113.77 SS G_CDS: -4.18 Total: -117.95 kcal
Atomic # 9 Polarization: -5.21 SS G_CDS: 1.48 Total: -3.73 kcal
Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal
Atomic # 16 Polarization: 108.93 SS G_CDS: -0.28 Total: 108.65 kcal
Total: -88.09 1.49 -86.60 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000847707085.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.915 kcal
(2) G-P(sol) polarization free energy of solvation -88.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) -219.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds