Wall clock time and date at job start Wed Apr 1 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 S 1.65597 * 119.99903 * 180.02562 * 14 12 11 16 16 O 1.42102 * 104.27664 * 181.06862 * 15 14 12 17 17 O 1.42104 * 104.27740 * 308.92361 * 15 14 12 18 18 C 1.81397 * 104.45565 * 64.99352 * 15 14 12 19 19 C 1.52998 * 109.47536 * 179.97438 * 18 15 14 20 20 F 1.39894 * 109.47180 * 300.00101 * 19 18 15 21 21 F 1.39901 * 109.46918 * 59.99918 * 19 18 15 22 22 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 23 23 C 1.38233 * 119.99857 * 57.92474 * 22 9 7 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 9 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 238.19148 * 22 9 7 28 28 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 30 30 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 31 31 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 32 32 H 1.09006 * 109.46888 * 300.00094 * 18 15 14 33 33 H 1.08998 * 109.47256 * 59.99998 * 18 15 14 34 34 H 1.08995 * 109.46990 * 179.97438 * 19 18 15 35 35 H 1.07994 * 120.00554 * 359.97438 * 23 22 9 36 36 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 37 37 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 38 38 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 39 39 H 1.07999 * 120.00162 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 16 3.9755 -3.2797 -4.4548 16 8 4.5253 -4.4867 -4.9649 17 8 2.5853 -3.0053 -4.5617 18 6 4.9501 -1.8529 -5.0070 19 6 4.7768 -1.6701 -6.5161 20 9 5.2176 -2.8205 -7.1789 21 9 3.4259 -1.4528 -6.8074 22 6 3.8618 -1.2140 1.6084 23 6 3.4059 -2.2350 2.4211 24 6 3.7379 -2.2510 3.7630 25 6 4.5181 -1.2409 4.2940 26 6 4.9697 -0.2170 3.4823 27 6 4.6413 -0.2035 2.1396 28 1 -0.4850 0.8400 0.0004 29 1 5.1534 -2.4938 -0.3493 30 1 3.5998 -3.3339 -0.1285 31 1 4.7174 -4.1261 -2.4492 32 1 4.6069 -0.9566 -4.4902 33 1 6.0028 -2.0224 -4.7804 34 1 5.3621 -0.8125 -6.8477 35 1 2.7930 -3.0219 2.0072 36 1 3.3854 -3.0509 4.3970 37 1 4.7752 -1.2518 5.3429 38 1 5.5796 0.5719 3.8971 39 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851362504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:21 Heat of formation + Delta-G solvation = -179.007717 kcal Electronic energy + Delta-G solvation = -28809.969820 eV Core-core repulsion = 24287.925084 eV Total energy + Delta-G solvation = -4522.044736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.42618 -47.38922 -39.84642 -38.56836 -37.19343 -36.07849 -34.44296 -34.13804 -32.16521 -31.76721 -30.30036 -29.21245 -26.25689 -24.21869 -23.00879 -22.04410 -21.39004 -19.79669 -19.43377 -18.69933 -17.81580 -17.63553 -17.12818 -17.09761 -16.86686 -16.09553 -15.82823 -15.38339 -14.87549 -14.76482 -14.31509 -14.25382 -14.14011 -13.73579 -13.63600 -13.33945 -13.09422 -12.87546 -12.83889 -12.67247 -12.46139 -12.23535 -12.17495 -12.05482 -12.03760 -11.97763 -11.39436 -11.06140 -10.89312 -10.61109 -10.51484 -10.47015 -10.09122 -9.80676 -9.63055 -9.21340 -8.55028 -8.29856 -7.92984 -6.06969 -4.05272 -0.15120 2.00197 2.04648 2.24928 2.59375 3.08302 3.32533 3.35770 3.38820 3.50008 3.70755 3.78593 4.29174 4.30650 4.41877 4.46291 4.71165 4.85632 5.04789 5.12969 5.31414 5.43033 5.47620 5.57298 5.69033 5.76936 5.92148 6.12408 6.20288 6.34117 6.57387 6.69783 6.83129 6.87195 7.05884 7.16114 7.45436 7.59735 7.71143 7.97139 8.42667 8.92848 9.55203 11.05912 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003570 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.734477 B = 7840.512218 C = 8642.369877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.086 3.914 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.262 1.262 6 H -0.290 1.290 7 C -0.495 4.495 8 H 0.075 0.925 9 C 0.045 3.955 10 H 0.056 0.944 11 C -0.117 4.117 12 C 0.529 3.471 13 O -0.454 6.454 14 N -1.059 6.059 15 S 2.596 3.404 16 O -0.938 6.938 17 O -0.901 6.901 18 C -0.701 4.701 19 C 0.278 3.722 20 F -0.194 7.194 21 F -0.187 7.187 22 C -0.041 4.041 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.124 4.124 27 C -0.138 4.138 28 H 0.264 0.736 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.431 0.569 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.851 -4.289 -4.321 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.118 4.118 3 Si 0.694 3.306 4 H -0.199 1.199 5 H -0.187 1.187 6 H -0.216 1.216 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.026 3.974 10 H 0.074 0.926 11 C -0.159 4.159 12 C 0.316 3.684 13 O -0.321 6.321 14 N -0.827 5.827 15 S 2.686 3.314 16 O -0.928 6.928 17 O -0.891 6.891 18 C -0.827 4.827 19 C 0.223 3.777 20 F -0.175 7.175 21 F -0.168 7.168 22 C -0.042 4.042 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.142 4.142 27 C -0.157 4.157 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.267 0.733 32 H 0.193 0.807 33 H 0.180 0.820 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.642 -3.987 -5.198 16.041 hybrid contribution 0.920 1.112 0.443 1.509 sum 15.562 -2.875 -4.755 16.524 Atomic orbital electron populations 1.69876 1.06334 1.27020 1.49490 1.24889 0.94513 0.98755 0.93595 0.86983 0.80604 0.84359 0.78609 1.19888 1.18745 1.21640 1.20636 0.87679 0.94925 1.49982 0.90652 1.18305 0.98327 0.93633 0.87160 0.92640 1.21813 1.01523 1.03601 0.89003 1.21082 0.75943 0.80462 0.90957 1.90906 1.34199 1.31044 1.75999 1.55281 1.68018 1.31399 1.27963 1.05749 0.76067 0.75709 0.73863 1.93655 1.80885 1.40365 1.77910 1.93736 1.26727 1.84835 1.83759 1.31800 1.19610 1.27173 1.04150 1.21256 0.79860 0.88261 0.88326 1.93099 1.89231 1.52802 1.82406 1.93146 1.34382 1.95005 1.94253 1.20694 0.91886 0.92880 0.98747 1.20967 0.98708 0.99217 0.92950 1.21074 0.99017 0.98654 0.95611 1.20884 1.00883 0.95945 0.98892 1.20959 1.00823 0.98342 0.94096 1.21039 1.00102 0.99268 0.95250 0.92607 0.89873 0.88340 0.73339 0.80738 0.81979 0.84598 0.86099 0.87074 0.87341 0.87310 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 2 C 0.09 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 21.48 26.62 -169.99 -4.52 16.96 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.26 -6.11 6.29 56.52 0.36 -5.75 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 7 C -0.50 -12.93 6.97 -34.44 -0.24 -13.17 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 9 C 0.05 0.94 1.21 -92.92 -0.11 0.83 16 10 H 0.06 1.20 4.88 -51.93 -0.25 0.95 16 11 C -0.12 -1.85 4.93 -27.88 -0.14 -1.99 16 12 C 0.53 8.81 7.32 -10.99 -0.08 8.73 16 13 O -0.45 -9.61 13.09 -11.60 -0.15 -9.76 16 14 N -1.06 -13.24 5.60 31.22 0.17 -13.07 16 15 S 2.60 36.92 4.76 -107.50 -0.51 36.41 16 16 O -0.94 -14.00 17.59 -57.54 -1.01 -15.01 16 17 O -0.90 -17.66 16.55 -64.80 -1.07 -18.74 16 18 C -0.70 -7.04 6.17 37.16 0.23 -6.81 16 19 C 0.28 2.81 5.45 37.16 0.20 3.02 16 20 F -0.19 -2.24 16.61 2.25 0.04 -2.20 16 21 F -0.19 -2.57 16.61 2.25 0.04 -2.53 16 22 C -0.04 -0.80 4.52 -104.62 -0.47 -1.27 16 23 C -0.10 -1.81 8.86 -39.58 -0.35 -2.16 16 24 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 25 C -0.15 -2.26 10.05 -39.58 -0.40 -2.65 16 26 C -0.12 -1.99 10.05 -39.58 -0.40 -2.39 16 27 C -0.14 -2.51 9.08 -39.58 -0.36 -2.87 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.44 7.69 -51.93 -0.40 1.04 16 31 H 0.43 3.57 8.79 -34.47 -0.30 3.26 16 32 H 0.17 1.81 7.19 -51.92 -0.37 1.44 16 33 H 0.16 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.12 2.13 7.72 -52.49 -0.41 1.72 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.11 1.88 7.91 -52.49 -0.42 1.46 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -37.54 351.15 -7.86 -45.40 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.29 Total: 4.45 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.61 Total: -20.79 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.95 Total: -39.48 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -2.24 Total: -43.51 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.52 Total: 16.96 kcal Atomic # 16 Polarization: 36.92 SS G_CDS: -0.51 Total: 36.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.54 -7.86 -45.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851362504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.603 kcal (2) G-P(sol) polarization free energy of solvation -37.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds