Wall clock time and date at job start Wed Apr 1 2020 04:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 S 1.65597 * 119.99903 * 180.02562 * 14 12 11 16 16 O 1.42102 * 104.27664 * 181.06862 * 15 14 12 17 17 O 1.42104 * 104.27740 * 308.92361 * 15 14 12 18 18 C 1.81397 * 104.45565 * 64.99352 * 15 14 12 19 19 C 1.52998 * 109.47536 * 179.97438 * 18 15 14 20 20 F 1.39894 * 109.47180 * 300.00101 * 19 18 15 21 21 F 1.39901 * 109.46918 * 59.99918 * 19 18 15 22 22 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 23 23 C 1.38233 * 119.99857 * 57.92474 * 22 9 7 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 9 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 238.19148 * 22 9 7 28 28 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 30 30 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 31 31 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 32 32 H 1.09006 * 109.46888 * 300.00094 * 18 15 14 33 33 H 1.08998 * 109.47256 * 59.99998 * 18 15 14 34 34 H 1.08995 * 109.46990 * 179.97438 * 19 18 15 35 35 H 1.07994 * 120.00554 * 359.97438 * 23 22 9 36 36 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 37 37 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 38 38 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 39 39 H 1.07999 * 120.00162 * 359.97438 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 16 3.9755 -3.2797 -4.4548 16 8 4.5253 -4.4867 -4.9649 17 8 2.5853 -3.0053 -4.5617 18 6 4.9501 -1.8529 -5.0070 19 6 4.7768 -1.6701 -6.5161 20 9 5.2176 -2.8205 -7.1789 21 9 3.4259 -1.4528 -6.8074 22 6 3.8618 -1.2140 1.6084 23 6 3.4059 -2.2350 2.4211 24 6 3.7379 -2.2510 3.7630 25 6 4.5181 -1.2409 4.2940 26 6 4.9697 -0.2170 3.4823 27 6 4.6413 -0.2035 2.1396 28 1 -0.4850 0.8400 0.0004 29 1 5.1534 -2.4938 -0.3493 30 1 3.5998 -3.3339 -0.1285 31 1 4.7174 -4.1261 -2.4492 32 1 4.6069 -0.9566 -4.4902 33 1 6.0028 -2.0224 -4.7804 34 1 5.3621 -0.8125 -6.8477 35 1 2.7930 -3.0219 2.0072 36 1 3.3854 -3.0509 4.3970 37 1 4.7752 -1.2518 5.3429 38 1 5.5796 0.5719 3.8971 39 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851362504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:20 Heat of formation + Delta-G solvation = -207.638394 kcal Electronic energy + Delta-G solvation = -28811.211339 eV Core-core repulsion = 24287.925084 eV Total energy + Delta-G solvation = -4523.286255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.29594 -48.28656 -41.20895 -39.88708 -38.41046 -37.33475 -35.98976 -35.45280 -33.71641 -33.00649 -31.57937 -30.51043 -28.00942 -25.08765 -24.58485 -23.33883 -22.64356 -21.10041 -20.75709 -19.67965 -19.06543 -18.80936 -18.61824 -18.31169 -17.88554 -17.35015 -16.88075 -16.54064 -16.45971 -16.22712 -15.73432 -15.51953 -15.21667 -15.11013 -14.69077 -14.64102 -14.22428 -14.14722 -14.09581 -13.94167 -13.84026 -13.62122 -13.45759 -13.32614 -13.31315 -12.97842 -12.93755 -12.73708 -12.15939 -12.08117 -11.87157 -11.80080 -11.64127 -11.52132 -11.13084 -10.95243 -10.64302 -9.59477 -9.29560 -8.20900 -6.19195 -1.24071 0.70632 0.74845 1.08606 1.32436 1.34277 1.37561 1.43044 2.21179 2.40725 2.48375 2.88748 2.98274 3.08730 3.21284 3.30909 3.52763 3.68803 4.00940 4.04605 4.14172 4.27181 4.30578 4.33423 4.44259 4.50508 4.63664 4.85838 4.88310 5.02409 5.22092 5.38985 5.42198 5.68526 5.76490 5.79816 5.84582 6.03859 6.34352 6.37772 6.68870 6.83069 7.44100 8.96429 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.003570 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.734477 B = 7840.512218 C = 8642.369877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.018 3.982 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.237 1.237 6 H -0.304 1.304 7 C -0.473 4.473 8 H 0.033 0.967 9 C 0.044 3.956 10 H 0.049 0.951 11 C -0.117 4.117 12 C 0.533 3.467 13 O -0.506 6.506 14 N -1.039 6.039 15 S 2.587 3.413 16 O -0.952 6.952 17 O -0.969 6.969 18 C -0.677 4.677 19 C 0.264 3.736 20 F -0.203 7.203 21 F -0.214 7.214 22 C -0.062 4.062 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.258 0.742 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.450 0.550 32 H 0.178 0.822 33 H 0.215 0.785 34 H 0.196 0.804 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.301 -3.798 -2.880 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.179 4.179 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.161 1.161 6 H -0.231 1.231 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.025 3.975 10 H 0.067 0.933 11 C -0.159 4.159 12 C 0.321 3.679 13 O -0.377 6.377 14 N -0.808 5.808 15 S 2.683 3.317 16 O -0.942 6.942 17 O -0.959 6.959 18 C -0.809 4.809 19 C 0.209 3.791 20 F -0.185 7.185 21 F -0.195 7.195 22 C -0.062 4.062 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.159 4.159 26 C -0.143 4.143 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.290 0.710 32 H 0.195 0.805 33 H 0.233 0.767 34 H 0.213 0.787 35 H 0.130 0.870 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.134 -3.602 -3.726 19.824 hybrid contribution -0.329 0.827 0.044 0.891 sum 18.805 -2.775 -3.682 19.362 Atomic orbital electron populations 1.70055 1.08322 1.27307 1.53748 1.25720 0.95081 1.02571 0.94510 0.86138 0.80048 0.79976 0.79392 1.18583 1.16113 1.23094 1.20915 0.90793 0.92670 1.46664 0.94847 1.18209 0.94469 0.95672 0.89189 0.93274 1.21831 1.04612 1.01592 0.87854 1.21249 0.74921 0.80234 0.91521 1.90894 1.36544 1.33368 1.76864 1.54825 1.67404 1.31276 1.27299 1.05607 0.75446 0.76764 0.73899 1.93635 1.80627 1.42089 1.77846 1.93673 1.31534 1.86105 1.84581 1.31663 1.21395 1.23585 1.04211 1.22046 0.79210 0.89774 0.88073 1.93081 1.89132 1.53705 1.82556 1.93100 1.36838 1.95157 1.94423 1.20441 0.94056 0.94372 0.97380 1.21036 0.99236 0.99170 0.94235 1.21392 0.98539 0.99648 0.94863 1.21333 0.99268 0.94796 1.00535 1.21338 1.00499 0.99203 0.93236 1.21215 1.00392 0.98876 0.96559 0.93290 0.84660 0.87392 0.70998 0.80456 0.76732 0.78743 0.87049 0.84591 0.83901 0.84307 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 2 C 0.02 1.04 5.47 84.66 0.46 1.50 16 3 Si 0.92 44.95 26.62 68.60 1.83 46.78 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.24 -10.49 6.29 99.48 0.63 -9.86 16 6 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 7 C -0.47 -25.56 6.97 25.60 0.18 -25.38 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.04 1.79 1.21 -12.29 -0.01 1.78 16 10 H 0.05 2.07 4.88 -2.39 -0.01 2.05 16 11 C -0.12 -3.52 4.93 29.85 0.15 -3.37 16 12 C 0.53 17.38 7.32 87.66 0.64 18.02 16 13 O -0.51 -21.67 13.09 13.37 0.17 -21.50 16 14 N -1.04 -24.81 5.60 -173.53 -0.97 -25.78 16 15 S 2.59 72.75 4.76 -56.49 -0.27 72.48 16 16 O -0.95 -27.83 17.59 -127.65 -2.25 -30.07 16 17 O -0.97 -40.00 16.55 -120.71 -2.00 -41.99 16 18 C -0.68 -11.76 6.17 71.98 0.44 -11.31 16 19 C 0.26 4.67 5.45 71.98 0.39 5.06 16 20 F -0.20 -4.29 16.61 44.97 0.75 -3.54 16 21 F -0.21 -5.84 16.61 44.97 0.75 -5.09 16 22 C -0.06 -2.28 4.52 -19.87 -0.09 -2.37 16 23 C -0.12 -4.11 8.86 22.27 0.20 -3.92 16 24 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 25 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 26 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 27 C -0.15 -5.06 9.08 22.27 0.20 -4.86 16 28 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.11 3.05 7.69 -2.39 -0.02 3.03 16 31 H 0.45 6.58 8.79 -96.75 -0.85 5.73 16 32 H 0.18 3.26 7.19 -2.39 -0.02 3.24 16 33 H 0.22 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.20 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 3.95 7.72 -2.91 -0.02 3.93 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.11 3.58 7.91 -2.91 -0.02 3.55 16 Total: -1.00 -89.84 351.15 1.72 -88.12 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.17 Total: 16.89 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.23 Total: -34.97 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -0.67 Total: -87.10 kcal Atomic # 8 Polarization: -89.50 SS G_CDS: -4.07 Total: -93.57 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 1.49 Total: -8.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.83 Total: 46.78 kcal Atomic # 16 Polarization: 72.75 SS G_CDS: -0.27 Total: 72.48 kcal Total: -89.84 1.72 -88.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851362504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.517 kcal (2) G-P(sol) polarization free energy of solvation -89.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds