Wall clock time and date at job start Wed Apr 1 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 N 1.46497 * 109.47421 * 120.00411 * 2 1 3 5 5 C 1.46501 * 119.99711 * 293.42857 * 4 2 1 6 6 C 1.50703 * 109.47274 * 86.26708 * 5 4 2 7 7 C 1.38111 * 120.02220 * 263.19945 * 6 5 4 8 8 C 1.38394 * 120.05263 * 179.78445 * 7 6 5 9 9 Cl 1.73595 * 119.94450 * 180.23059 * 8 7 6 10 10 C 1.38430 * 120.11188 * 0.47072 * 8 7 6 11 11 C 1.38073 * 120.05595 * 359.78411 * 10 8 7 12 12 C 1.38852 * 120.02918 * 83.47207 * 6 5 4 13 13 O 1.35762 * 120.05878 * 0.02562 * 12 6 5 14 14 C 1.34829 * 116.99857 * 185.98350 * 13 12 6 15 15 H 1.07997 * 120.00364 * 5.22265 * 14 13 12 16 16 C 1.38648 * 119.99709 * 185.22205 * 14 13 12 17 17 N 1.31559 * 120.00286 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46862 * 90.00309 * 18 16 14 20 20 H 1.48502 * 109.46698 * 209.99981 * 18 16 14 21 21 H 1.48490 * 109.47266 * 330.00104 * 18 16 14 22 22 S 1.65605 * 120.00178 * 113.42490 * 4 2 1 23 23 C 1.81402 * 104.45065 * 279.76273 * 22 4 2 24 24 O 1.42102 * 104.27333 * 35.83741 * 22 4 2 25 25 O 1.42099 * 104.27658 * 163.69087 * 22 4 2 26 26 H 1.08998 * 109.47246 * 71.56480 * 1 2 3 27 27 H 1.09002 * 109.47267 * 191.57149 * 1 2 3 28 28 H 1.09002 * 109.46726 * 311.56522 * 1 2 3 29 29 H 1.09003 * 109.46911 * 240.00103 * 2 1 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46987 * 299.99924 * 3 2 1 32 32 H 1.08993 * 109.47238 * 60.00226 * 3 2 1 33 33 H 1.09007 * 109.46797 * 206.25847 * 5 4 2 34 34 H 1.08989 * 109.47304 * 326.26001 * 5 4 2 35 35 H 1.07996 * 119.97534 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.97355 * 179.76218 * 10 8 7 37 37 H 1.07999 * 120.02857 * 179.97438 * 11 10 8 38 38 H 0.97000 * 120.00362 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.46920 * 56.98919 * 23 22 4 40 40 H 1.08996 * 109.46648 * 176.98441 * 23 22 4 41 41 H 1.08992 * 109.46876 * 296.98740 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7869 -0.1119 2.5219 6 6 0.4370 -0.5471 3.0313 7 6 -0.6581 0.2809 2.8808 8 6 -1.8990 -0.1200 3.3444 9 17 -3.2748 0.9203 3.1484 10 6 -2.0439 -1.3470 3.9686 11 6 -0.9511 -2.1761 4.1262 12 6 0.2944 -1.7782 3.6574 13 8 1.3706 -2.5912 3.8120 14 6 1.1414 -3.8211 4.3148 15 1 0.1290 -4.1506 4.4954 16 6 2.2057 -4.6627 4.6001 17 7 3.4391 -4.2611 4.3806 18 14 1.8882 -6.3663 5.2974 19 1 1.7412 -7.3375 4.1837 20 1 3.0293 -6.7693 6.1582 21 1 0.6421 -6.3465 6.1046 22 16 2.8319 -2.1256 1.0495 23 6 1.5265 -3.3655 0.8278 24 8 3.5885 -1.9790 -0.1444 25 8 3.4725 -2.2952 2.3065 26 1 -0.3633 0.3250 -0.9749 27 1 -0.3634 -1.0068 0.2061 28 1 -0.3633 0.6819 0.7689 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.5617 -0.4542 3.2080 34 1 1.8164 0.9754 2.4538 35 1 -0.5469 1.2402 2.3975 36 1 -3.0125 -1.6560 4.3330 37 1 -1.0646 -3.1331 4.6137 38 1 4.1837 -4.8500 4.5798 39 1 0.9176 -3.1014 -0.0367 40 1 1.9786 -4.3444 0.6684 41 1 0.8992 -3.3957 1.7186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853716699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:37 Heat of formation + Delta-G solvation = -65.475231 kcal Electronic energy + Delta-G solvation = -28541.838020 eV Core-core repulsion = 24576.513102 eV Total energy + Delta-G solvation = -3965.324918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.57946 -37.39087 -36.70979 -36.26523 -35.47657 -34.99192 -32.47253 -31.99882 -30.27332 -28.78319 -28.69879 -26.98365 -25.62330 -25.16227 -21.96429 -21.25896 -20.41318 -18.20974 -18.16219 -17.22150 -17.03466 -15.79099 -15.62330 -15.18983 -14.86857 -14.57392 -14.21803 -14.03809 -13.97466 -13.85362 -13.33955 -12.98590 -12.80385 -12.76540 -12.53218 -12.20391 -12.12546 -12.09547 -11.79731 -11.67523 -11.42266 -11.24780 -11.16503 -11.07461 -10.99250 -10.87143 -10.67763 -10.54797 -10.48902 -10.41783 -10.23794 -10.09320 -9.57447 -8.87315 -8.58707 -8.29750 -7.31937 -6.40945 -4.09879 1.04816 1.88436 2.00819 2.77514 3.05378 3.08873 3.12399 3.29325 3.87123 4.28594 4.60458 4.90158 4.90873 5.00139 5.06206 5.26566 5.31102 5.38637 5.45759 5.46635 5.53170 5.70962 5.75274 5.79595 5.90412 5.95488 6.03685 6.10513 6.18085 6.34806 6.38269 6.46981 6.48310 6.57962 6.64613 6.82837 6.89435 7.05485 7.15947 7.24071 7.50310 7.87378 8.91624 9.52872 10.64443 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.006401 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.397717 B = 4373.488465 C = 6682.383171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.142 3.858 3 C -0.155 4.155 4 N -0.987 5.987 5 C 0.174 3.826 6 C -0.178 4.178 7 C -0.044 4.044 8 C -0.132 4.132 9 Cl -0.109 7.109 10 C -0.056 4.056 11 C -0.227 4.227 12 C 0.148 3.852 13 O -0.143 6.143 14 C -0.412 4.412 15 H 0.091 0.909 16 C 0.049 3.951 17 N -0.800 5.800 18 Si 0.924 3.076 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.268 1.268 22 S 2.589 3.411 23 C -0.665 4.665 24 O -0.988 6.988 25 O -0.877 6.877 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.269 0.731 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 6.360 -5.974 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.035 3.965 3 C -0.214 4.214 4 N -0.823 5.823 5 C 0.050 3.950 6 C -0.182 4.182 7 C -0.063 4.063 8 C -0.159 4.159 9 Cl -0.081 7.081 10 C -0.075 4.075 11 C -0.247 4.247 12 C 0.091 3.909 13 O -0.044 6.044 14 C -0.487 4.487 15 H 0.108 0.892 16 C -0.161 4.161 17 N -0.429 5.429 18 Si 0.749 3.251 19 H -0.200 1.200 20 H -0.202 1.202 21 H -0.192 1.192 22 S 2.682 3.318 23 C -0.814 4.814 24 O -0.978 6.978 25 O -0.867 6.867 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.789 6.243 -5.983 9.884 hybrid contribution -1.436 -1.145 0.372 1.874 sum -6.225 5.098 -5.611 9.809 Atomic orbital electron populations 1.22512 0.95423 1.03226 1.01973 1.20764 0.94090 0.94277 0.87342 1.22071 1.01743 0.95699 1.01911 1.57895 1.74575 1.38878 1.10968 1.19924 0.94297 0.98086 0.82717 1.19210 0.96397 0.94770 1.07791 1.20390 0.89997 0.98659 0.97298 1.20259 0.87850 0.94608 1.13222 1.98280 1.44906 1.67891 1.97008 1.20637 0.98397 0.91995 0.96502 1.21102 0.92371 1.02490 1.08733 1.19334 0.88102 0.90406 0.93088 1.84152 1.27277 1.23756 1.69229 1.21237 0.94475 0.87212 1.45794 0.89185 1.25299 0.94657 0.99330 0.96858 1.70260 0.97705 1.35436 1.39498 0.85980 0.78589 0.81343 0.79182 1.19972 1.20171 1.19228 1.05639 0.76111 0.75117 0.74965 1.30547 1.21032 1.18451 1.11377 1.93523 1.67512 1.85710 1.51091 1.93870 1.70349 1.83464 1.39015 0.92582 0.92237 0.90922 0.89384 0.92100 0.92028 0.92026 0.87222 0.90341 0.85955 0.86697 0.84722 0.92075 0.87575 0.86567 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 8.14 37.16 0.30 -1.82 16 2 C 0.14 1.90 3.20 -67.94 -0.22 1.68 16 3 C -0.16 -1.77 8.98 37.16 0.33 -1.44 16 4 N -0.99 -15.94 2.65 -108.58 -0.29 -16.23 16 5 C 0.17 2.88 5.18 -5.19 -0.03 2.85 16 6 C -0.18 -3.11 4.85 -104.44 -0.51 -3.62 16 7 C -0.04 -0.68 7.16 -39.57 -0.28 -0.97 16 8 C -0.13 -2.11 6.32 -39.45 -0.25 -2.36 16 9 Cl -0.11 -1.55 28.95 -51.86 -1.50 -3.05 16 10 C -0.06 -0.94 9.82 -39.57 -0.39 -1.33 16 11 C -0.23 -4.31 9.13 -39.40 -0.36 -4.67 16 12 C 0.15 2.99 5.80 -39.11 -0.23 2.76 16 13 O -0.14 -3.35 5.25 -20.00 -0.11 -3.46 16 14 C -0.41 -9.97 8.80 30.88 0.27 -9.70 16 15 H 0.09 2.04 5.30 -52.49 -0.28 1.76 16 16 C 0.05 1.21 5.49 -17.52 -0.10 1.11 16 17 N -0.80 -21.26 12.65 55.48 0.70 -20.55 16 18 Si 0.92 18.90 29.55 -169.99 -5.02 13.88 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 S 2.59 49.40 5.62 -107.50 -0.60 48.79 16 23 C -0.66 -11.59 10.89 101.05 1.10 -10.49 16 24 O -0.99 -20.17 16.87 -57.54 -0.97 -21.14 16 25 O -0.88 -20.39 13.39 -65.69 -0.88 -21.27 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.89 4.52 -51.93 -0.23 0.66 16 29 H 0.09 1.18 7.07 -51.93 -0.37 0.82 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 33 H 0.11 2.11 6.37 -51.93 -0.33 1.78 16 34 H 0.08 1.07 6.04 -51.94 -0.31 0.76 16 35 H 0.12 1.64 6.75 -52.49 -0.35 1.29 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.14 2.57 5.72 -52.49 -0.30 2.27 16 38 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 39 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 41 H 0.14 2.78 5.20 -51.93 -0.27 2.50 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -28.95 348.75 -8.64 -37.59 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.88 Total: 8.17 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -0.35 Total: -27.99 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.41 Total: -36.79 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.96 Total: -45.87 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: 49.40 SS G_CDS: -0.60 Total: 48.79 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -1.50 Total: -3.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.95 -8.64 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853716699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.883 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds