Wall clock time and date at job start Wed Apr 1 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 N 1.46497 * 109.47421 * 120.00411 * 2 1 3 5 5 C 1.46501 * 119.99711 * 293.42857 * 4 2 1 6 6 C 1.50703 * 109.47274 * 86.26708 * 5 4 2 7 7 C 1.38111 * 120.02220 * 263.19945 * 6 5 4 8 8 C 1.38394 * 120.05263 * 179.78445 * 7 6 5 9 9 Cl 1.73595 * 119.94450 * 180.23059 * 8 7 6 10 10 C 1.38430 * 120.11188 * 0.47072 * 8 7 6 11 11 C 1.38073 * 120.05595 * 359.78411 * 10 8 7 12 12 C 1.38852 * 120.02918 * 83.47207 * 6 5 4 13 13 O 1.35762 * 120.05878 * 0.02562 * 12 6 5 14 14 C 1.34829 * 116.99857 * 185.98350 * 13 12 6 15 15 H 1.07997 * 120.00364 * 5.22265 * 14 13 12 16 16 C 1.38648 * 119.99709 * 185.22205 * 14 13 12 17 17 N 1.31559 * 120.00286 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46862 * 90.00309 * 18 16 14 20 20 H 1.48502 * 109.46698 * 209.99981 * 18 16 14 21 21 H 1.48490 * 109.47266 * 330.00104 * 18 16 14 22 22 S 1.65605 * 120.00178 * 113.42490 * 4 2 1 23 23 C 1.81402 * 104.45065 * 279.76273 * 22 4 2 24 24 O 1.42102 * 104.27333 * 35.83741 * 22 4 2 25 25 O 1.42099 * 104.27658 * 163.69087 * 22 4 2 26 26 H 1.08998 * 109.47246 * 71.56480 * 1 2 3 27 27 H 1.09002 * 109.47267 * 191.57149 * 1 2 3 28 28 H 1.09002 * 109.46726 * 311.56522 * 1 2 3 29 29 H 1.09003 * 109.46911 * 240.00103 * 2 1 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46987 * 299.99924 * 3 2 1 32 32 H 1.08993 * 109.47238 * 60.00226 * 3 2 1 33 33 H 1.09007 * 109.46797 * 206.25847 * 5 4 2 34 34 H 1.08989 * 109.47304 * 326.26001 * 5 4 2 35 35 H 1.07996 * 119.97534 * 0.02562 * 7 6 5 36 36 H 1.07997 * 119.97355 * 179.76218 * 10 8 7 37 37 H 1.07999 * 120.02857 * 179.97438 * 11 10 8 38 38 H 0.97000 * 120.00362 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.46920 * 56.98919 * 23 22 4 40 40 H 1.08996 * 109.46648 * 176.98441 * 23 22 4 41 41 H 1.08992 * 109.46876 * 296.98740 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7869 -0.1119 2.5219 6 6 0.4370 -0.5471 3.0313 7 6 -0.6581 0.2809 2.8808 8 6 -1.8990 -0.1200 3.3444 9 17 -3.2748 0.9203 3.1484 10 6 -2.0439 -1.3470 3.9686 11 6 -0.9511 -2.1761 4.1262 12 6 0.2944 -1.7782 3.6574 13 8 1.3706 -2.5912 3.8120 14 6 1.1414 -3.8211 4.3148 15 1 0.1290 -4.1506 4.4954 16 6 2.2057 -4.6627 4.6001 17 7 3.4391 -4.2611 4.3806 18 14 1.8882 -6.3663 5.2974 19 1 1.7412 -7.3375 4.1837 20 1 3.0293 -6.7693 6.1582 21 1 0.6421 -6.3465 6.1046 22 16 2.8319 -2.1256 1.0495 23 6 1.5265 -3.3655 0.8278 24 8 3.5885 -1.9790 -0.1444 25 8 3.4725 -2.2952 2.3065 26 1 -0.3633 0.3250 -0.9749 27 1 -0.3634 -1.0068 0.2061 28 1 -0.3633 0.6819 0.7689 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 2.5617 -0.4542 3.2080 34 1 1.8164 0.9754 2.4538 35 1 -0.5469 1.2402 2.3975 36 1 -3.0125 -1.6560 4.3330 37 1 -1.0646 -3.1331 4.6137 38 1 4.1837 -4.8500 4.5798 39 1 0.9176 -3.1014 -0.0367 40 1 1.9786 -4.3444 0.6684 41 1 0.8992 -3.3957 1.7186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853716699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:36 Heat of formation + Delta-G solvation = -82.824647 kcal Electronic energy + Delta-G solvation = -28542.590347 eV Core-core repulsion = 24576.513102 eV Total energy + Delta-G solvation = -3966.077245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04040 -38.74770 -38.04315 -37.83125 -36.79424 -36.59592 -34.15197 -33.31527 -31.57927 -30.19946 -30.13345 -27.93854 -27.29120 -26.55192 -23.43067 -22.57021 -21.67505 -19.77754 -19.59853 -18.64192 -18.58388 -17.22158 -17.03925 -16.64859 -16.37457 -16.13390 -15.57861 -15.51896 -15.39815 -15.00359 -14.64377 -14.44980 -14.12901 -14.00049 -13.82368 -13.55785 -13.54508 -13.41716 -13.35531 -12.87682 -12.77014 -12.68715 -12.66712 -12.55412 -12.24807 -12.11702 -12.08065 -12.01315 -11.80305 -11.73582 -11.64335 -11.40203 -11.14667 -10.60251 -9.87300 -9.65790 -8.81523 -8.17886 -5.92823 -0.42841 0.47949 0.58969 1.40608 1.45176 1.45717 1.53071 1.91654 2.22242 2.82310 3.12727 3.25950 3.46834 3.56169 3.78443 3.98251 4.07105 4.12376 4.20048 4.30782 4.34717 4.42204 4.49820 4.61585 4.73540 4.89826 4.90897 4.95977 4.99446 5.04758 5.11791 5.18238 5.23942 5.29135 5.48856 5.51169 5.54080 5.58761 5.68594 5.95781 6.05021 6.12455 7.15229 7.89059 8.90693 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.006401 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.397717 B = 4373.488465 C = 6682.383171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 C -0.154 4.154 4 N -0.981 5.981 5 C 0.177 3.823 6 C -0.172 4.172 7 C -0.035 4.035 8 C -0.120 4.120 9 Cl -0.082 7.082 10 C -0.057 4.057 11 C -0.238 4.238 12 C 0.125 3.875 13 O -0.175 6.175 14 C -0.420 4.420 15 H 0.096 0.904 16 C -0.002 4.002 17 N -0.853 5.853 18 Si 0.983 3.017 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.258 1.258 22 S 2.593 3.407 23 C -0.658 4.658 24 O -1.008 7.008 25 O -0.924 6.924 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.263 0.737 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 8.477 -7.170 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 C -0.212 4.212 4 N -0.819 5.819 5 C 0.053 3.947 6 C -0.176 4.176 7 C -0.054 4.054 8 C -0.147 4.147 9 Cl -0.053 7.053 10 C -0.076 4.076 11 C -0.258 4.258 12 C 0.071 3.929 13 O -0.079 6.079 14 C -0.496 4.496 15 H 0.113 0.887 16 C -0.206 4.206 17 N -0.486 5.486 18 Si 0.806 3.194 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.182 1.182 22 S 2.688 3.312 23 C -0.809 4.809 24 O -0.998 6.998 25 O -0.914 6.914 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.137 0.863 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.895 8.398 -7.191 13.585 hybrid contribution -0.804 -1.497 0.625 1.810 sum -8.699 6.901 -6.566 12.900 Atomic orbital electron populations 1.22482 0.94089 1.02525 1.03634 1.21089 0.95152 0.95251 0.85822 1.22083 1.01087 0.94342 1.03736 1.57629 1.74460 1.37950 1.11818 1.19886 0.92849 0.99750 0.82235 1.19415 0.97448 0.93937 1.06795 1.20678 0.89023 0.99335 0.96393 1.20470 0.88903 0.94387 1.10923 1.98303 1.43387 1.66838 1.96778 1.20851 0.98597 0.91968 0.96154 1.21176 0.92789 1.02768 1.09022 1.19837 0.88114 0.91334 0.93574 1.84178 1.28360 1.23893 1.71442 1.21498 0.94614 0.88190 1.45285 0.88671 1.26151 0.94434 1.02623 0.97359 1.70437 0.98469 1.36729 1.42955 0.85090 0.78418 0.77366 0.78569 1.19392 1.20569 1.18201 1.05173 0.76516 0.75893 0.73603 1.30433 1.20413 1.18082 1.11926 1.93486 1.68765 1.86252 1.51316 1.93830 1.72247 1.84442 1.40898 0.89950 0.93672 0.90571 0.89568 0.93274 0.89397 0.90970 0.90569 0.86874 0.82740 0.84525 0.85585 0.92807 0.84401 0.86318 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 8.14 71.98 0.59 -2.93 16 2 C 0.13 3.21 3.20 44.99 0.14 3.36 16 3 C -0.15 -3.00 8.98 71.98 0.65 -2.35 16 4 N -0.98 -31.01 2.65 -497.42 -1.32 -32.33 16 5 C 0.18 5.74 5.18 85.63 0.44 6.19 16 6 C -0.17 -5.78 4.85 -19.75 -0.10 -5.88 16 7 C -0.04 -0.97 7.16 22.28 0.16 -0.81 16 8 C -0.12 -3.38 6.32 22.35 0.14 -3.24 16 9 Cl -0.08 -1.94 28.95 -2.72 -0.08 -2.02 16 10 C -0.06 -1.75 9.82 22.28 0.22 -1.53 16 11 C -0.24 -8.89 9.13 22.39 0.20 -8.69 16 12 C 0.13 5.10 5.80 22.58 0.13 5.23 16 13 O -0.18 -8.55 5.25 -3.73 -0.02 -8.57 16 14 C -0.42 -21.18 8.80 67.92 0.60 -20.58 16 15 H 0.10 4.47 5.30 -2.91 -0.02 4.46 16 16 C 0.00 -0.08 5.49 84.83 0.47 0.39 16 17 N -0.85 -48.28 12.65 21.61 0.27 -48.00 16 18 Si 0.98 40.23 29.55 68.60 2.03 42.26 16 19 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 22 S 2.59 101.83 5.62 -56.49 -0.32 101.51 16 23 C -0.66 -23.23 10.89 113.37 1.23 -22.00 16 24 O -1.01 -41.90 16.87 -127.65 -2.15 -44.05 16 25 O -0.92 -45.66 13.39 -119.85 -1.60 -47.27 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.50 4.52 -2.39 -0.01 1.49 16 29 H 0.09 2.15 7.07 -2.39 -0.02 2.13 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.24 6.53 -2.39 -0.02 1.23 16 33 H 0.08 3.06 6.37 -2.38 -0.02 3.04 16 34 H 0.11 2.81 6.04 -2.39 -0.01 2.79 16 35 H 0.16 3.30 6.75 -2.91 -0.02 3.28 16 36 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.13 4.87 5.72 -2.91 -0.02 4.86 16 38 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 40 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 41 H 0.13 5.05 5.20 -2.39 -0.01 5.04 16 Total: -1.00 -66.13 348.75 2.76 -63.37 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 1.07 Total: 27.94 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 4.88 Total: -52.84 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.04 Total: -80.33 kcal Atomic # 8 Polarization: -96.11 SS G_CDS: -3.78 Total: -99.89 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 101.83 SS G_CDS: -0.32 Total: 101.51 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -66.13 2.76 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853716699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.453 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds