Wall clock time and date at job start Wed Apr 1 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81398 * 109.47148 * 2 1 4 4 O 1.42094 * 113.54542 * 298.46451 * 3 2 1 5 5 C 1.81406 * 107.16708 * 64.66363 * 3 2 1 6 6 C 1.52998 * 109.47061 * 53.79776 * 5 3 2 7 7 N 1.49354 * 107.52323 * 179.97438 * 3 2 1 8 8 S 1.65601 * 120.00226 * 179.97438 * 7 3 2 9 9 O 1.42106 * 106.39958 * 66.46240 * 8 7 3 10 10 O 1.42101 * 106.40285 * 293.54529 * 8 7 3 11 11 O 1.52193 * 107.21934 * 180.02562 * 8 7 3 12 12 C 1.35679 * 114.00008 * 75.00437 * 11 8 7 13 13 C 1.39314 * 119.81633 * 269.72282 * 12 11 8 14 14 C 1.36434 * 120.18369 * 179.75923 * 13 12 11 15 15 C 1.40836 * 119.81254 * 0.51305 * 14 13 12 16 16 C 1.41217 * 120.17905 * 179.72008 * 15 14 13 17 17 H 1.07995 * 119.99845 * 204.56654 * 16 15 14 18 18 C 1.39885 * 119.99855 * 24.56907 * 16 15 14 19 19 N 1.30882 * 120.00536 * 17.92553 * 18 16 15 20 20 Si 1.86803 * 119.99916 * 197.92188 * 18 16 15 21 21 H 1.48505 * 109.47035 * 59.99772 * 20 18 16 22 22 H 1.48501 * 109.47318 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47208 * 300.00243 * 20 18 16 24 24 C 1.40837 * 119.63856 * 359.74224 * 15 14 13 25 25 C 1.36430 * 119.81333 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47092 * 300.00034 * 1 2 3 28 28 H 1.08999 * 109.47177 * 59.99638 * 1 2 3 29 29 H 1.09004 * 109.47293 * 240.00479 * 2 1 3 30 30 H 1.08999 * 109.47177 * 120.00362 * 2 1 3 31 31 H 1.08997 * 109.47350 * 173.80163 * 5 3 2 32 32 H 1.08999 * 109.47079 * 293.79906 * 5 3 2 33 33 H 1.09005 * 109.46759 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47355 * 300.00384 * 6 5 3 35 35 H 1.09001 * 109.46885 * 60.00875 * 6 5 3 36 36 H 1.08003 * 119.90789 * 0.02562 * 13 12 11 37 37 H 1.07998 * 120.09473 * 180.25740 * 14 13 12 38 38 H 0.96997 * 120.00464 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.09164 * 179.97438 * 24 15 14 40 40 H 1.07999 * 119.91157 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.7385 2.4524 -1.1452 5 6 1.6138 2.4623 1.5665 6 6 2.0865 1.5914 2.7323 7 7 3.6273 1.6595 0.0006 8 16 4.5036 3.0646 0.0002 9 8 4.2535 3.6939 1.2495 10 8 4.2544 3.6925 -1.2500 11 8 5.9755 2.6776 0.0003 12 6 6.4277 2.2267 -1.1968 13 6 6.3670 0.8666 -1.4925 14 6 6.8151 0.4056 -2.6959 15 6 7.3501 1.3075 -3.6360 16 6 7.8215 0.8380 -4.8816 17 1 8.5643 1.4027 -5.4255 18 6 7.3263 -0.3583 -5.4110 19 7 6.2054 -0.8599 -4.9584 20 14 8.2650 -1.2401 -6.7641 21 1 9.6202 -1.5985 -6.2739 22 1 7.5350 -2.4746 -7.1495 23 1 8.3858 -0.3481 -7.9451 24 6 7.4127 2.6802 -3.3270 25 6 6.9550 3.1255 -2.1214 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0511 3.4568 1.6552 32 1 0.5268 2.5401 1.5885 33 1 1.7739 2.0436 3.6736 34 1 1.6492 0.5970 2.6436 35 1 3.1735 1.5137 2.7103 36 1 5.9602 0.1758 -0.7688 37 1 6.7635 -0.6484 -2.9253 38 1 5.8622 -1.6897 -5.3253 39 1 7.8219 3.3782 -4.0423 40 1 7.0026 4.1777 -1.8825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866407566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:10 Heat of formation + Delta-G solvation = -89.034875 kcal Electronic energy + Delta-G solvation = -27210.082437 eV Core-core repulsion = 23245.779602 eV Total energy + Delta-G solvation = -3964.302834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.53829 -36.82420 -36.67488 -36.29774 -35.22722 -34.20418 -33.62597 -33.38090 -32.31269 -29.74528 -29.32239 -25.31183 -24.73912 -24.04366 -21.78563 -21.32498 -20.06397 -18.85808 -17.60928 -17.44749 -17.15518 -16.91083 -16.43910 -16.10669 -15.47534 -15.16107 -14.53245 -14.48381 -14.25149 -13.97117 -13.67122 -13.34469 -13.10371 -12.87839 -12.60044 -12.51682 -12.29515 -12.13331 -12.06856 -11.93733 -11.88663 -11.65018 -11.36809 -11.31582 -11.23397 -11.11810 -11.09770 -11.03836 -10.90674 -10.46983 -10.09041 -10.01009 -9.83602 -9.45573 -9.22690 -7.68539 -7.44494 -6.96946 -4.52049 -0.77625 1.33403 2.37832 2.62650 2.95712 2.97963 3.00859 3.03827 3.14811 3.48109 3.70588 3.79339 4.09683 4.24315 4.39855 4.43849 4.46241 4.69468 4.90915 5.07590 5.16793 5.25480 5.31403 5.37009 5.46250 5.53404 5.57461 5.82328 6.17962 6.23546 6.38626 6.85484 6.89665 7.06270 7.13026 7.45027 7.74784 7.85680 7.88370 8.07753 8.42870 8.66829 8.77406 9.95660 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.003831 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.206234 B = 7307.456379 C = 8486.794164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.497 4.497 3 S 2.311 3.689 4 O -0.915 6.915 5 C -0.601 4.601 6 C -0.142 4.142 7 N -1.508 6.508 8 S 2.737 3.263 9 O -1.011 7.011 10 O -0.977 6.977 11 O -0.634 6.634 12 C -0.088 4.088 13 C -0.072 4.072 14 C -0.164 4.164 15 C 0.121 3.879 16 C -0.437 4.437 17 H 0.086 0.914 18 C 0.072 3.928 19 N -0.773 5.773 20 Si 0.916 3.084 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.217 4.217 25 C -0.053 4.053 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.287 0.713 39 H 0.106 0.894 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 -4.082 11.092 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.637 4.637 3 S 2.502 3.498 4 O -0.899 6.899 5 C -0.736 4.736 6 C -0.200 4.200 7 N -1.531 6.531 8 S 2.752 3.248 9 O -1.001 7.001 10 O -0.968 6.968 11 O -0.590 6.590 12 C -0.133 4.133 13 C -0.093 4.093 14 C -0.184 4.184 15 C 0.117 3.883 16 C -0.466 4.466 17 H 0.104 0.896 18 C -0.148 4.148 19 N -0.397 5.397 20 Si 0.740 3.260 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.237 4.237 25 C -0.074 4.074 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.176 0.824 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.030 -3.424 10.573 16.378 hybrid contribution -0.157 -0.380 0.022 0.412 sum -12.187 -3.804 10.595 16.591 Atomic orbital electron populations 1.21831 0.90260 1.06165 1.03921 1.29089 1.05426 1.14995 1.14171 1.11607 0.76604 0.81865 0.79750 1.93686 1.84535 1.68349 1.43371 1.30459 1.11930 1.13481 1.17715 1.21556 1.03864 0.97709 0.96834 1.76664 1.30923 1.63349 1.82133 1.03531 0.75939 0.72093 0.73249 1.93529 1.84856 1.75472 1.46263 1.93663 1.83856 1.74773 1.44504 1.85581 1.46552 1.83819 1.43080 1.17598 1.18946 0.93316 0.83441 1.20553 0.98928 0.92451 0.97324 1.20936 1.05451 1.00260 0.91756 1.17803 0.87423 0.90600 0.92484 1.19739 1.19623 1.04391 1.02881 0.89582 1.26068 0.93933 0.96743 0.98085 1.69852 1.15011 1.17831 1.37003 0.86228 0.80532 0.78777 0.80491 1.18510 1.20113 1.18711 1.20602 1.10989 0.95498 0.96653 1.20362 0.96644 0.97132 0.93275 0.88576 0.90921 0.90110 0.82435 0.83289 0.82902 0.84861 0.89782 0.91397 0.89645 0.87129 0.85411 0.90236 0.87597 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.88 37.16 0.37 -0.44 16 2 C -0.50 -3.82 6.34 37.16 0.24 -3.59 16 3 S 2.31 32.07 3.77 -98.05 -0.37 31.70 16 4 O -0.91 -17.30 17.12 -46.30 -0.79 -18.09 16 5 C -0.60 -6.00 5.99 37.16 0.22 -5.78 16 6 C -0.14 -1.15 9.69 37.16 0.36 -0.79 16 7 N -1.51 -28.10 10.68 60.35 0.64 -27.45 16 8 S 2.74 62.77 5.39 -98.05 -0.53 62.25 16 9 O -1.01 -21.90 15.84 -66.81 -1.06 -22.96 16 10 O -0.98 -25.96 15.57 -68.85 -1.07 -27.03 16 11 O -0.63 -15.36 10.21 -50.87 -0.52 -15.88 16 12 C -0.09 -2.28 4.85 -38.78 -0.19 -2.46 16 13 C -0.07 -1.80 9.77 -39.83 -0.39 -2.19 16 14 C -0.16 -4.27 8.64 -39.25 -0.34 -4.60 16 15 C 0.12 3.22 5.57 -106.80 -0.60 2.63 16 16 C -0.44 -11.15 9.04 -37.84 -0.34 -11.49 16 17 H 0.09 2.06 7.91 -52.49 -0.41 1.65 16 18 C 0.07 1.73 5.13 -17.34 -0.09 1.64 16 19 N -0.77 -19.02 10.96 55.54 0.61 -18.41 16 20 Si 0.92 17.54 29.60 -169.99 -5.03 12.51 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 24 C -0.22 -5.57 9.74 -39.25 -0.38 -5.95 16 25 C -0.05 -1.37 9.12 -39.83 -0.36 -1.73 16 26 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.17 7.68 -51.93 -0.40 -0.22 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.16 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.15 0.68 7.12 -51.92 -0.37 0.31 16 31 H 0.15 1.89 6.46 -51.93 -0.34 1.55 16 32 H 0.13 0.72 7.85 -51.92 -0.41 0.31 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.29 6.85 -51.93 -0.36 -0.07 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 2.46 8.06 -52.48 -0.42 2.04 16 37 H 0.13 3.27 6.16 -52.49 -0.32 2.94 16 38 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 39 H 0.11 2.47 8.06 -52.49 -0.42 2.04 16 40 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -37.46 357.42 -9.36 -46.82 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.12 Total: 5.92 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: -1.50 Total: -34.76 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 1.25 Total: -45.86 kcal Atomic # 8 Polarization: -80.52 SS G_CDS: -3.44 Total: -83.96 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 94.84 SS G_CDS: -0.90 Total: 93.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.46 -9.36 -46.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866407566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.216 kcal (2) G-P(sol) polarization free energy of solvation -37.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds