Wall clock time and date at job start Wed Apr 1 2020 04:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81398 * 109.47148 * 2 1 4 4 O 1.42094 * 113.54542 * 298.46451 * 3 2 1 5 5 C 1.81406 * 107.16708 * 64.66363 * 3 2 1 6 6 C 1.52998 * 109.47061 * 53.79776 * 5 3 2 7 7 N 1.49354 * 107.52323 * 179.97438 * 3 2 1 8 8 S 1.65601 * 120.00226 * 179.97438 * 7 3 2 9 9 O 1.42106 * 106.39958 * 66.46240 * 8 7 3 10 10 O 1.42101 * 106.40285 * 293.54529 * 8 7 3 11 11 O 1.52193 * 107.21934 * 180.02562 * 8 7 3 12 12 C 1.35679 * 114.00008 * 75.00437 * 11 8 7 13 13 C 1.39314 * 119.81633 * 269.72282 * 12 11 8 14 14 C 1.36434 * 120.18369 * 179.75923 * 13 12 11 15 15 C 1.40836 * 119.81254 * 0.51305 * 14 13 12 16 16 C 1.41217 * 120.17905 * 179.72008 * 15 14 13 17 17 H 1.07995 * 119.99845 * 204.56654 * 16 15 14 18 18 C 1.39885 * 119.99855 * 24.56907 * 16 15 14 19 19 N 1.30882 * 120.00536 * 17.92553 * 18 16 15 20 20 Si 1.86803 * 119.99916 * 197.92188 * 18 16 15 21 21 H 1.48505 * 109.47035 * 59.99772 * 20 18 16 22 22 H 1.48501 * 109.47318 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47208 * 300.00243 * 20 18 16 24 24 C 1.40837 * 119.63856 * 359.74224 * 15 14 13 25 25 C 1.36430 * 119.81333 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47092 * 300.00034 * 1 2 3 28 28 H 1.08999 * 109.47177 * 59.99638 * 1 2 3 29 29 H 1.09004 * 109.47293 * 240.00479 * 2 1 3 30 30 H 1.08999 * 109.47177 * 120.00362 * 2 1 3 31 31 H 1.08997 * 109.47350 * 173.80163 * 5 3 2 32 32 H 1.08999 * 109.47079 * 293.79906 * 5 3 2 33 33 H 1.09005 * 109.46759 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.47355 * 300.00384 * 6 5 3 35 35 H 1.09001 * 109.46885 * 60.00875 * 6 5 3 36 36 H 1.08003 * 119.90789 * 0.02562 * 13 12 11 37 37 H 1.07998 * 120.09473 * 180.25740 * 14 13 12 38 38 H 0.96997 * 120.00464 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.09164 * 179.97438 * 24 15 14 40 40 H 1.07999 * 119.91157 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.7385 2.4524 -1.1452 5 6 1.6138 2.4623 1.5665 6 6 2.0865 1.5914 2.7323 7 7 3.6273 1.6595 0.0006 8 16 4.5036 3.0646 0.0002 9 8 4.2535 3.6939 1.2495 10 8 4.2544 3.6925 -1.2500 11 8 5.9755 2.6776 0.0003 12 6 6.4277 2.2267 -1.1968 13 6 6.3670 0.8666 -1.4925 14 6 6.8151 0.4056 -2.6959 15 6 7.3501 1.3075 -3.6360 16 6 7.8215 0.8380 -4.8816 17 1 8.5643 1.4027 -5.4255 18 6 7.3263 -0.3583 -5.4110 19 7 6.2054 -0.8599 -4.9584 20 14 8.2650 -1.2401 -6.7641 21 1 9.6202 -1.5985 -6.2739 22 1 7.5350 -2.4746 -7.1495 23 1 8.3858 -0.3481 -7.9451 24 6 7.4127 2.6802 -3.3270 25 6 6.9550 3.1255 -2.1214 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0511 3.4568 1.6552 32 1 0.5268 2.5401 1.5885 33 1 1.7739 2.0436 3.6736 34 1 1.6492 0.5970 2.6436 35 1 3.1735 1.5137 2.7103 36 1 5.9602 0.1758 -0.7688 37 1 6.7635 -0.6484 -2.9253 38 1 5.8622 -1.6897 -5.3253 39 1 7.8219 3.3782 -4.0423 40 1 7.0026 4.1777 -1.8825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866407566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:09 Heat of formation + Delta-G solvation = -117.763720 kcal Electronic energy + Delta-G solvation = -27211.328213 eV Core-core repulsion = 23245.779602 eV Total energy + Delta-G solvation = -3965.548610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43108 -38.72423 -38.30190 -37.70299 -37.04969 -35.49260 -34.86001 -34.47774 -33.20174 -31.71455 -31.28062 -27.24154 -25.34675 -24.72687 -23.69325 -23.25267 -21.69021 -20.42828 -19.41640 -19.09085 -18.62726 -18.44946 -17.57684 -17.27926 -17.20041 -16.30866 -16.17203 -15.84728 -15.73021 -15.14070 -14.72189 -14.70109 -14.20088 -14.15143 -14.02886 -13.87807 -13.81709 -13.63325 -13.34964 -13.28198 -13.22548 -13.15870 -13.05863 -12.79391 -12.65011 -12.54413 -12.42567 -12.29668 -12.23330 -12.01452 -11.79475 -11.43636 -11.35264 -11.07733 -10.95246 -9.68409 -9.43312 -8.79043 -6.48318 -1.70201 -0.32315 0.71775 1.01118 1.39925 1.43123 1.53365 1.56550 1.64724 1.80759 2.18792 2.57669 2.71713 3.40276 3.46329 3.56872 3.59757 3.68694 3.76026 3.89349 4.20818 4.29570 4.32025 4.40229 4.48910 4.71285 4.73547 4.79994 4.88757 4.91274 4.98637 5.09429 5.18338 5.20490 5.27597 5.49634 5.76644 5.86545 5.91770 6.12388 6.47797 6.72788 6.80930 8.17743 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.003831 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.206234 B = 7307.456379 C = 8486.794164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.452 4.452 3 S 2.251 3.749 4 O -0.985 6.985 5 C -0.572 4.572 6 C -0.154 4.154 7 N -1.527 6.527 8 S 2.746 3.254 9 O -1.010 7.010 10 O -1.027 7.027 11 O -0.644 6.644 12 C -0.106 4.106 13 C -0.072 4.072 14 C -0.181 4.181 15 C 0.092 3.908 16 C -0.465 4.465 17 H 0.093 0.907 18 C 0.034 3.966 19 N -0.801 5.801 20 Si 0.996 3.004 21 H -0.255 1.255 22 H -0.262 1.262 23 H -0.259 1.259 24 C -0.234 4.234 25 C -0.071 4.071 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.194 0.806 31 H 0.125 0.875 32 H 0.190 0.810 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.299 0.701 39 H 0.120 0.880 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 -7.139 12.412 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.594 4.594 3 S 2.450 3.550 4 O -0.970 6.970 5 C -0.710 4.710 6 C -0.212 4.212 7 N -1.552 6.552 8 S 2.759 3.241 9 O -1.000 7.000 10 O -1.017 7.017 11 O -0.601 6.601 12 C -0.150 4.150 13 C -0.093 4.093 14 C -0.200 4.200 15 C 0.088 3.912 16 C -0.492 4.492 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.425 5.425 20 Si 0.815 3.185 21 H -0.179 1.179 22 H -0.186 1.186 23 H -0.183 1.183 24 C -0.254 4.254 25 C -0.092 4.092 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.086 0.914 29 H 0.172 0.828 30 H 0.212 0.788 31 H 0.143 0.857 32 H 0.207 0.793 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.228 -6.440 11.852 19.606 hybrid contribution 0.243 0.493 -0.183 0.580 sum -13.985 -5.947 11.669 19.161 Atomic orbital electron populations 1.22146 0.87273 1.08495 1.05356 1.29023 1.07352 1.06755 1.16281 1.13474 0.75162 0.85792 0.80564 1.93626 1.84576 1.71754 1.47064 1.30205 1.15106 1.11779 1.13938 1.21830 1.02698 1.00222 0.96410 1.76266 1.33957 1.60825 1.84107 1.02782 0.75726 0.72920 0.72644 1.93516 1.84617 1.76326 1.45585 1.93604 1.84397 1.76970 1.46751 1.85473 1.47971 1.84050 1.42561 1.17757 1.19614 0.93836 0.83831 1.20747 0.98387 0.92613 0.97515 1.20995 1.06584 1.00220 0.92249 1.18188 0.88254 0.91134 0.93576 1.20076 1.20258 1.05998 1.02883 0.88883 1.27019 0.94392 0.96624 1.00451 1.69876 1.16025 1.18430 1.38128 0.85046 0.78985 0.77631 0.76873 1.17933 1.18644 1.18287 1.20820 1.11605 0.95808 0.97131 1.20626 0.96960 0.97888 0.93709 0.85250 0.87241 0.91368 0.82811 0.78835 0.85709 0.79281 0.87589 0.86362 0.92304 0.84986 0.85406 0.88980 0.86235 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 9.88 71.98 0.71 -0.08 16 2 C -0.45 -5.11 6.34 71.98 0.46 -4.66 16 3 S 2.25 60.71 3.77 -37.15 -0.14 60.57 16 4 O -0.98 -39.13 17.12 -138.40 -2.37 -41.50 16 5 C -0.57 -9.79 5.99 71.98 0.43 -9.36 16 6 C -0.15 -1.82 9.69 71.98 0.70 -1.12 16 7 N -1.53 -58.07 10.68 37.02 0.40 -57.67 16 8 S 2.75 132.19 5.39 -37.15 -0.20 131.99 16 9 O -1.01 -45.43 15.84 -118.78 -1.88 -47.31 16 10 O -1.03 -58.40 15.57 -116.84 -1.82 -60.22 16 11 O -0.64 -32.83 10.21 -59.25 -0.60 -33.43 16 12 C -0.11 -5.78 4.85 22.79 0.11 -5.67 16 13 C -0.07 -3.76 9.77 22.11 0.22 -3.54 16 14 C -0.18 -9.78 8.64 22.48 0.19 -9.58 16 15 C 0.09 5.14 5.57 -21.28 -0.12 5.02 16 16 C -0.46 -24.25 9.04 23.40 0.21 -24.04 16 17 H 0.09 4.55 7.91 -2.91 -0.02 4.53 16 18 C 0.03 1.61 5.13 85.23 0.44 2.05 16 19 N -0.80 -39.64 10.96 21.82 0.24 -39.40 16 20 Si 1.00 35.26 29.60 68.60 2.03 37.29 16 21 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 22 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 23 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 24 C -0.23 -12.64 9.74 22.48 0.22 -12.42 16 25 C -0.07 -3.88 9.12 22.11 0.20 -3.68 16 26 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.11 -0.25 7.68 -2.39 -0.02 -0.27 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.19 0.51 7.12 -2.39 -0.02 0.49 16 31 H 0.12 3.00 6.46 -2.39 -0.02 2.99 16 32 H 0.19 1.06 7.85 -2.39 -0.02 1.04 16 33 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.12 0.19 6.85 -2.39 -0.02 0.17 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 6.04 8.06 -2.91 -0.02 6.02 16 37 H 0.13 6.76 6.16 -2.91 -0.02 6.74 16 38 H 0.30 12.99 8.30 -92.71 -0.77 12.22 16 39 H 0.12 5.87 8.06 -2.91 -0.02 5.85 16 40 H 0.11 5.52 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -91.81 357.42 0.47 -91.33 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.06 Total: 25.44 kcal Atomic # 6 Polarization: -70.86 SS G_CDS: 3.77 Total: -67.09 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: 0.63 Total: -97.07 kcal Atomic # 8 Polarization: -175.79 SS G_CDS: -6.68 Total: -182.46 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Atomic # 16 Polarization: 192.90 SS G_CDS: -0.34 Total: 192.56 kcal Total: -91.81 0.47 -91.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866407566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.429 kcal (2) G-P(sol) polarization free energy of solvation -91.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds