Wall clock time and date at job start Wed Apr 1 2020 04:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 120.00007 * 2 1 4 4 C 1.53001 * 109.46707 * 277.76814 * 3 2 1 5 5 S 1.81402 * 109.46584 * 179.97438 * 4 3 2 6 6 C 1.81404 * 101.91862 * 180.02562 * 5 4 3 7 7 O 1.42102 * 108.57831 * 294.48435 * 5 4 3 8 8 O 1.42101 * 108.57947 * 65.51308 * 5 4 3 9 9 S 1.65595 * 120.00203 * 179.97438 * 2 1 3 10 10 O 1.42103 * 106.40321 * 165.06888 * 9 2 1 11 11 O 1.42102 * 106.40155 * 32.15111 * 9 2 1 12 12 C 1.76200 * 107.21966 * 278.61003 * 9 2 1 13 13 C 1.37633 * 120.13099 * 116.90039 * 12 9 2 14 14 C 1.38614 * 120.24887 * 180.32202 * 13 12 9 15 15 C 1.38655 * 120.50275 * 359.67371 * 14 13 12 16 16 C 1.37604 * 120.24732 * 359.97438 * 15 14 13 17 17 C 1.40697 * 120.12555 * 296.59709 * 12 9 2 18 18 C 1.41397 * 120.24687 * 359.97383 * 17 12 9 19 19 H 1.08000 * 119.99726 * 319.57884 * 18 17 12 20 20 C 1.39945 * 120.00053 * 139.57323 * 18 17 12 21 21 N 1.30821 * 120.00163 * 148.55806 * 20 18 17 22 22 Si 1.86800 * 120.00162 * 328.55253 * 20 18 17 23 23 H 1.48504 * 109.47064 * 270.48790 * 22 20 18 24 24 H 1.48506 * 109.47038 * 30.48357 * 22 20 18 25 25 H 1.48493 * 109.47106 * 150.48340 * 22 20 18 26 26 H 1.09000 * 109.47230 * 269.99707 * 1 2 3 27 27 H 1.08997 * 109.47477 * 30.00246 * 1 2 3 28 28 H 1.09008 * 109.46741 * 149.99734 * 1 2 3 29 29 H 1.09003 * 109.46674 * 37.76319 * 3 2 1 30 30 H 1.08996 * 109.47096 * 157.76435 * 3 2 1 31 31 H 1.08994 * 109.47227 * 299.99455 * 4 3 2 32 32 H 1.09003 * 109.47431 * 60.00269 * 4 3 2 33 33 H 1.08993 * 109.47730 * 59.99980 * 6 5 4 34 34 H 1.09007 * 109.46955 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47069 * 299.99582 * 6 5 4 36 36 H 1.08002 * 119.87622 * 0.02562 * 13 12 9 37 37 H 1.08001 * 119.75019 * 179.69200 * 14 13 12 38 38 H 1.07996 * 119.87947 * 180.02562 * 15 14 13 39 39 H 1.07996 * 120.12889 * 180.02562 * 16 15 14 40 40 H 0.96998 * 120.00682 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2836 1.8079 -1.4293 5 16 3.1900 3.3792 -1.4292 6 6 3.1690 3.8240 -3.1877 7 8 2.4293 4.3406 -0.7105 8 8 4.5336 3.1269 -1.0415 9 16 2.2930 -1.4341 0.0006 10 8 3.6343 -1.1231 -0.3507 11 8 1.4941 -2.3590 -0.7244 12 6 2.3356 -2.0110 1.6650 13 6 1.7213 -3.1958 2.0014 14 6 1.7476 -3.6487 3.3112 15 6 2.3972 -2.9191 4.2952 16 6 3.0244 -1.7355 3.9803 17 6 3.0033 -1.2655 2.6539 18 6 3.6440 -0.0504 2.3187 19 1 4.1978 0.0311 1.3951 20 6 3.5602 1.0466 3.1836 21 7 4.5494 1.8996 3.2558 22 14 2.0359 1.2929 4.2349 23 1 1.0458 2.1092 3.4875 24 1 1.4418 -0.0281 4.5626 25 1 2.4083 1.9933 5.4902 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6755 1.9896 0.6294 30 1 3.2030 1.1078 0.3889 31 1 2.8055 1.0871 -2.0587 32 1 1.2781 1.9689 -1.8181 33 1 2.1374 3.9254 -3.5246 34 1 3.6925 4.7696 -3.3296 35 1 3.6650 3.0443 -3.7656 36 1 1.2127 -3.7724 1.2429 37 1 1.2586 -4.5770 3.5672 38 1 2.4118 -3.2816 5.3124 39 1 3.5302 -1.1690 4.7482 40 1 4.4917 2.6598 3.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866728074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:42 Heat of formation + Delta-G solvation = -112.411016 kcal Electronic energy + Delta-G solvation = -27978.316845 eV Core-core repulsion = 24013.000345 eV Total energy + Delta-G solvation = -3965.316500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -37.84271 -36.81326 -36.62048 -36.29472 -35.81711 -34.99775 -33.84266 -31.00822 -30.68656 -30.04502 -29.63065 -26.09306 -25.40710 -22.72914 -21.91594 -21.17320 -18.74274 -18.27887 -17.76552 -17.31014 -16.75857 -16.24864 -15.93847 -15.89831 -15.45032 -15.32036 -14.41004 -14.24765 -13.88034 -13.69693 -13.58419 -13.31520 -13.28269 -13.25098 -13.00422 -12.36250 -12.26223 -12.17969 -11.93890 -11.89379 -11.80353 -11.62705 -11.34545 -11.28208 -11.17129 -11.07691 -10.93857 -10.89626 -10.66102 -10.47119 -10.25192 -10.10649 -9.47792 -9.28791 -8.64703 -8.23019 -7.70576 -7.21912 -4.84296 0.03048 1.34209 2.07849 2.52727 2.82337 2.94395 3.04542 3.10933 3.62206 3.80551 3.81065 4.06887 4.19709 4.54310 4.69626 4.71613 4.83858 4.96369 5.06910 5.15527 5.39697 5.50552 5.57164 5.77109 5.79644 5.84442 5.96294 6.04493 6.18326 6.22974 6.38494 6.47974 6.65762 6.93389 7.01659 7.10725 7.27545 7.47080 7.60100 7.83174 8.17248 8.33929 8.53984 9.75964 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.005706 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.562980 B = 4905.562670 C = 6134.579827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.986 5.986 3 C 0.131 3.869 4 C -0.637 4.637 5 S 2.419 3.581 6 C -0.660 4.660 7 O -0.940 6.940 8 O -0.919 6.919 9 S 2.701 3.299 10 O -0.963 6.963 11 O -0.993 6.993 12 C -0.768 4.768 13 C 0.008 3.992 14 C -0.250 4.250 15 C -0.058 4.058 16 C -0.199 4.199 17 C 0.169 3.831 18 C -0.495 4.495 19 H 0.132 0.868 20 C 0.101 3.899 21 N -0.756 5.756 22 Si 0.862 3.138 23 H -0.259 1.259 24 H -0.227 1.227 25 H -0.272 1.272 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 3.457 -7.429 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.821 5.821 3 C 0.003 3.997 4 C -0.768 4.768 5 S 2.599 3.401 6 C -0.809 4.809 7 O -0.937 6.937 8 O -0.916 6.916 9 S 2.799 3.201 10 O -0.953 6.953 11 O -0.983 6.983 12 C -0.862 4.862 13 C -0.012 4.012 14 C -0.270 4.270 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.165 3.835 18 C -0.521 4.521 19 H 0.149 0.851 20 C -0.126 4.126 21 N -0.376 5.376 22 Si 0.684 3.316 23 H -0.183 1.183 24 H -0.150 1.150 25 H -0.197 1.197 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.263 3.800 -7.441 10.442 hybrid contribution -1.114 -0.118 0.612 1.276 sum -7.377 3.682 -6.829 10.706 Atomic orbital electron populations 1.21518 0.79308 1.03239 1.02044 1.57255 1.14425 1.20706 1.89750 1.21250 1.01472 0.86557 0.90380 1.30925 1.14979 1.22110 1.08777 1.07963 0.76600 0.77620 0.77964 1.30337 1.11226 1.12452 1.26904 1.93586 1.72977 1.58350 1.68798 1.93673 1.33242 1.84887 1.79758 1.01204 0.72797 0.71459 0.74654 1.93522 1.34607 1.83486 1.83721 1.93443 1.71129 1.61948 1.71815 1.29988 1.21871 1.11050 1.23311 1.20359 0.92294 0.92705 0.95881 1.20530 1.10517 1.02378 0.93607 1.20893 0.94651 0.94694 0.97389 1.21347 1.05811 0.97469 0.97207 1.17015 0.85194 0.91005 0.90317 1.20150 1.28426 0.94756 1.08793 0.85113 1.26103 0.96568 0.95296 0.94606 1.69841 1.28291 1.10594 1.28828 0.86897 0.83194 0.81683 0.79855 1.18324 1.14964 1.19705 0.92689 0.91265 0.90263 0.89524 0.85114 0.84543 0.84998 0.85606 0.85435 0.85279 0.87025 0.88192 0.88342 0.87751 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.70 59.85 0.64 1.84 16 2 N -0.99 -17.63 3.11 -121.75 -0.38 -18.01 16 3 C 0.13 2.32 4.68 -4.04 -0.02 2.30 16 4 C -0.64 -8.23 6.11 37.16 0.23 -8.01 16 5 S 2.42 31.93 5.36 -107.50 -0.58 31.35 16 6 C -0.66 -5.14 10.62 101.05 1.07 -4.07 16 7 O -0.94 -15.03 18.10 -57.83 -1.05 -16.08 16 8 O -0.92 -16.68 18.10 -57.83 -1.05 -17.73 16 9 S 2.70 57.22 5.06 -107.50 -0.54 56.68 16 10 O -0.96 -22.74 14.73 -57.17 -0.84 -23.58 16 11 O -0.99 -21.22 15.77 -57.17 -0.90 -22.13 16 12 C -0.77 -17.44 5.96 -38.87 -0.23 -17.67 16 13 C 0.01 0.16 9.53 -39.66 -0.38 -0.22 16 14 C -0.25 -5.02 10.05 -39.29 -0.39 -5.42 16 15 C -0.06 -1.18 10.02 -39.66 -0.40 -1.58 16 16 C -0.20 -4.51 7.08 -38.87 -0.28 -4.78 16 17 C 0.17 4.07 4.70 -106.82 -0.50 3.57 16 18 C -0.50 -12.32 6.28 -37.74 -0.24 -12.55 16 19 H 0.13 3.49 4.80 -52.49 -0.25 3.24 16 20 C 0.10 2.40 5.12 -17.34 -0.09 2.31 16 21 N -0.76 -18.61 13.93 55.55 0.77 -17.84 16 22 Si 0.86 18.00 26.91 -169.99 -4.57 13.42 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.23 -4.79 5.81 56.52 0.33 -4.46 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16 28 H 0.08 1.07 7.12 -51.92 -0.37 0.70 16 29 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 30 H 0.13 2.73 4.40 -51.93 -0.23 2.51 16 31 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.13 1.15 7.98 -51.92 -0.41 0.74 16 33 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.11 2.15 7.33 -52.49 -0.38 1.77 16 37 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 2.29 7.03 -52.49 -0.37 1.92 16 40 H 0.29 6.48 8.30 -40.82 -0.34 6.15 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -34.25 351.76 -9.44 -43.68 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.02 Total: 9.21 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: -0.58 Total: -44.28 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.39 Total: -35.85 kcal Atomic # 8 Polarization: -75.68 SS G_CDS: -3.84 Total: -79.52 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -4.57 Total: 13.42 kcal Atomic # 16 Polarization: 89.15 SS G_CDS: -1.12 Total: 88.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.25 -9.44 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866728074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.728 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds