Wall clock time and date at job start Wed Apr 1 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 120.00007 * 2 1 4 4 C 1.53001 * 109.46707 * 277.76814 * 3 2 1 5 5 S 1.81402 * 109.46584 * 179.97438 * 4 3 2 6 6 C 1.81404 * 101.91862 * 180.02562 * 5 4 3 7 7 O 1.42102 * 108.57831 * 294.48435 * 5 4 3 8 8 O 1.42101 * 108.57947 * 65.51308 * 5 4 3 9 9 S 1.65595 * 120.00203 * 179.97438 * 2 1 3 10 10 O 1.42103 * 106.40321 * 165.06888 * 9 2 1 11 11 O 1.42102 * 106.40155 * 32.15111 * 9 2 1 12 12 C 1.76200 * 107.21966 * 278.61003 * 9 2 1 13 13 C 1.37633 * 120.13099 * 116.90039 * 12 9 2 14 14 C 1.38614 * 120.24887 * 180.32202 * 13 12 9 15 15 C 1.38655 * 120.50275 * 359.67371 * 14 13 12 16 16 C 1.37604 * 120.24732 * 359.97438 * 15 14 13 17 17 C 1.40697 * 120.12555 * 296.59709 * 12 9 2 18 18 C 1.41397 * 120.24687 * 359.97383 * 17 12 9 19 19 H 1.08000 * 119.99726 * 319.57884 * 18 17 12 20 20 C 1.39945 * 120.00053 * 139.57323 * 18 17 12 21 21 N 1.30821 * 120.00163 * 148.55806 * 20 18 17 22 22 Si 1.86800 * 120.00162 * 328.55253 * 20 18 17 23 23 H 1.48504 * 109.47064 * 270.48790 * 22 20 18 24 24 H 1.48506 * 109.47038 * 30.48357 * 22 20 18 25 25 H 1.48493 * 109.47106 * 150.48340 * 22 20 18 26 26 H 1.09000 * 109.47230 * 269.99707 * 1 2 3 27 27 H 1.08997 * 109.47477 * 30.00246 * 1 2 3 28 28 H 1.09008 * 109.46741 * 149.99734 * 1 2 3 29 29 H 1.09003 * 109.46674 * 37.76319 * 3 2 1 30 30 H 1.08996 * 109.47096 * 157.76435 * 3 2 1 31 31 H 1.08994 * 109.47227 * 299.99455 * 4 3 2 32 32 H 1.09003 * 109.47431 * 60.00269 * 4 3 2 33 33 H 1.08993 * 109.47730 * 59.99980 * 6 5 4 34 34 H 1.09007 * 109.46955 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47069 * 299.99582 * 6 5 4 36 36 H 1.08002 * 119.87622 * 0.02562 * 13 12 9 37 37 H 1.08001 * 119.75019 * 179.69200 * 14 13 12 38 38 H 1.07996 * 119.87947 * 180.02562 * 15 14 13 39 39 H 1.07996 * 120.12889 * 180.02562 * 16 15 14 40 40 H 0.96998 * 120.00682 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2836 1.8079 -1.4293 5 16 3.1900 3.3792 -1.4292 6 6 3.1690 3.8240 -3.1877 7 8 2.4293 4.3406 -0.7105 8 8 4.5336 3.1269 -1.0415 9 16 2.2930 -1.4341 0.0006 10 8 3.6343 -1.1231 -0.3507 11 8 1.4941 -2.3590 -0.7244 12 6 2.3356 -2.0110 1.6650 13 6 1.7213 -3.1958 2.0014 14 6 1.7476 -3.6487 3.3112 15 6 2.3972 -2.9191 4.2952 16 6 3.0244 -1.7355 3.9803 17 6 3.0033 -1.2655 2.6539 18 6 3.6440 -0.0504 2.3187 19 1 4.1978 0.0311 1.3951 20 6 3.5602 1.0466 3.1836 21 7 4.5494 1.8996 3.2558 22 14 2.0359 1.2929 4.2349 23 1 1.0458 2.1092 3.4875 24 1 1.4418 -0.0281 4.5626 25 1 2.4083 1.9933 5.4902 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6755 1.9896 0.6294 30 1 3.2030 1.1078 0.3889 31 1 2.8055 1.0871 -2.0587 32 1 1.2781 1.9689 -1.8181 33 1 2.1374 3.9254 -3.5246 34 1 3.6925 4.7696 -3.3296 35 1 3.6650 3.0443 -3.7656 36 1 1.2127 -3.7724 1.2429 37 1 1.2586 -4.5770 3.5672 38 1 2.4118 -3.2816 5.3124 39 1 3.5302 -1.1690 4.7482 40 1 4.4917 2.6598 3.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866728074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:41 Heat of formation + Delta-G solvation = -140.315502 kcal Electronic energy + Delta-G solvation = -27979.526874 eV Core-core repulsion = 24013.000345 eV Total energy + Delta-G solvation = -3966.526529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.54243 -38.24175 -37.96668 -37.69827 -36.97803 -36.72814 -35.60495 -32.45489 -32.12973 -31.72520 -30.35690 -27.39055 -27.03458 -24.04043 -23.57554 -22.90112 -19.87894 -19.78691 -19.50355 -18.83309 -18.12276 -17.62705 -17.24553 -16.98903 -16.95711 -16.78810 -15.99624 -15.76586 -15.23867 -15.14404 -14.99496 -14.82765 -14.69837 -14.00331 -13.93592 -13.90134 -13.75900 -13.53718 -13.34365 -13.19229 -13.07108 -13.01819 -12.98662 -12.96776 -12.74944 -12.61286 -12.51386 -12.18854 -11.97953 -11.82542 -11.77367 -11.51574 -11.17237 -11.06040 -10.03754 -9.86968 -9.44162 -9.00384 -6.66828 -0.95636 -0.25742 0.36803 0.80905 1.25947 1.35112 1.43180 1.87913 2.10382 2.16469 2.45630 2.74606 2.91531 3.12648 3.27141 3.62574 3.68444 3.77707 4.11048 4.12375 4.23430 4.28936 4.36380 4.46401 4.56752 4.66219 4.70767 4.79702 4.93318 4.95386 4.97109 4.98338 5.12161 5.23905 5.41993 5.55033 5.70813 5.79047 5.87728 6.10285 6.34932 6.57421 6.73526 8.03824 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.005706 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.562980 B = 4905.562670 C = 6134.579827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.982 5.982 3 C 0.117 3.883 4 C -0.635 4.635 5 S 2.404 3.596 6 C -0.623 4.623 7 O -0.979 6.979 8 O -0.988 6.988 9 S 2.712 3.288 10 O -0.997 6.997 11 O -0.996 6.996 12 C -0.783 4.783 13 C -0.007 4.007 14 C -0.240 4.240 15 C -0.054 4.054 16 C -0.224 4.224 17 C 0.154 3.846 18 C -0.517 4.517 19 H 0.099 0.901 20 C 0.076 3.924 21 N -0.801 5.801 22 Si 0.905 3.095 23 H -0.247 1.247 24 H -0.227 1.227 25 H -0.263 1.263 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.226 2.786 -8.599 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.819 5.819 3 C -0.010 4.010 4 C -0.765 4.765 5 S 2.591 3.409 6 C -0.778 4.778 7 O -0.976 6.976 8 O -0.985 6.985 9 S 2.809 3.191 10 O -0.988 6.988 11 O -0.986 6.986 12 C -0.876 4.876 13 C -0.027 4.027 14 C -0.260 4.260 15 C -0.072 4.072 16 C -0.243 4.243 17 C 0.150 3.850 18 C -0.544 4.544 19 H 0.116 0.884 20 C -0.146 4.146 21 N -0.423 5.423 22 Si 0.723 3.277 23 H -0.171 1.171 24 H -0.150 1.150 25 H -0.187 1.187 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.164 0.836 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.347 3.102 -8.545 13.038 hybrid contribution -0.233 -0.059 0.848 0.882 sum -9.580 3.044 -7.697 12.660 Atomic orbital electron populations 1.21886 0.76782 1.05596 1.03012 1.56988 1.15909 1.19413 1.89608 1.21207 0.99575 0.86525 0.93650 1.30866 1.18070 1.21706 1.05895 1.07919 0.74882 0.77175 0.80941 1.30020 1.14578 1.13809 1.19347 1.93529 1.73000 1.59012 1.72090 1.93597 1.36417 1.85627 1.82871 1.00739 0.72225 0.72038 0.74134 1.93480 1.37031 1.84150 1.84095 1.93425 1.70937 1.62635 1.71645 1.30372 1.21592 1.11761 1.23850 1.20729 0.92353 0.92351 0.97239 1.21040 1.08936 1.03165 0.92862 1.21326 0.93034 0.93393 0.99441 1.21479 1.07246 0.98885 0.96724 1.17187 0.85451 0.90917 0.91479 1.19959 1.30063 0.96141 1.08282 0.88400 1.26672 0.98247 0.94546 0.95118 1.69870 1.30043 1.11800 1.30603 0.86267 0.80661 0.81685 0.79070 1.17113 1.14955 1.18685 0.92532 0.87359 0.89474 0.89167 0.89071 0.83568 0.80084 0.81680 0.83861 0.82879 0.85184 0.84396 0.84673 0.87986 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 10.70 127.77 1.37 3.22 16 2 N -0.98 -34.61 3.11 -539.10 -1.68 -36.29 16 3 C 0.12 4.26 4.68 86.38 0.40 4.66 16 4 C -0.63 -15.69 6.11 71.98 0.44 -15.25 16 5 S 2.40 63.45 5.36 -56.49 -0.30 63.15 16 6 C -0.62 -7.26 10.62 113.37 1.20 -6.06 16 7 O -0.98 -31.71 18.10 -127.37 -2.30 -34.02 16 8 O -0.99 -38.59 18.10 -127.37 -2.31 -40.89 16 9 S 2.71 115.87 5.06 -56.49 -0.29 115.59 16 10 O -1.00 -49.42 14.73 -128.00 -1.88 -51.31 16 11 O -1.00 -41.60 15.77 -128.00 -2.02 -43.62 16 12 C -0.78 -35.61 5.96 22.73 0.14 -35.47 16 13 C -0.01 -0.29 9.53 22.22 0.21 -0.07 16 14 C -0.24 -8.86 10.05 22.46 0.23 -8.63 16 15 C -0.05 -2.06 10.02 22.22 0.22 -1.84 16 16 C -0.22 -10.10 7.08 22.73 0.16 -9.94 16 17 C 0.15 7.56 4.70 -21.29 -0.10 7.46 16 18 C -0.52 -27.24 6.28 23.46 0.15 -27.09 16 19 H 0.10 5.73 4.80 -2.91 -0.01 5.72 16 20 C 0.08 3.83 5.12 85.26 0.44 4.27 16 21 N -0.80 -42.14 13.93 21.83 0.30 -41.83 16 22 Si 0.90 37.52 26.91 68.60 1.85 39.36 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.23 -9.32 5.81 99.48 0.58 -8.74 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 1.93 7.91 -2.39 -0.02 1.92 16 28 H 0.09 2.12 7.12 -2.38 -0.02 2.10 16 29 H 0.09 3.08 8.13 -2.39 -0.02 3.06 16 30 H 0.09 4.13 4.40 -2.39 -0.01 4.12 16 31 H 0.15 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.18 2.48 7.98 -2.39 -0.02 2.46 16 33 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.13 4.71 7.33 -2.91 -0.02 4.69 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.10 4.54 7.03 -2.91 -0.02 4.52 16 40 H 0.30 14.11 8.30 -92.71 -0.77 13.34 16 Total: -1.00 -80.92 351.76 -2.84 -83.76 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.94 Total: 30.85 kcal Atomic # 6 Polarization: -89.60 SS G_CDS: 4.86 Total: -84.74 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.37 Total: -78.12 kcal Atomic # 8 Polarization: -161.33 SS G_CDS: -8.51 Total: -169.84 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 1.85 Total: 39.36 kcal Atomic # 16 Polarization: 179.32 SS G_CDS: -0.59 Total: 178.73 kcal Total: -80.92 -2.84 -83.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866728074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.556 kcal (2) G-P(sol) polarization free energy of solvation -80.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds