Wall clock time and date at job start Wed Apr 1 2020 04:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81408 * 109.47155 * 2 1 4 4 O 1.42099 * 113.53975 * 298.45674 * 3 2 1 5 5 C 1.81398 * 107.16973 * 64.65879 * 3 2 1 6 6 C 1.52995 * 109.46977 * 53.79913 * 5 3 2 7 7 N 1.49353 * 107.51898 * 180.02562 * 3 2 1 8 8 S 1.65603 * 119.99671 * 179.97438 * 7 3 2 9 9 O 1.42099 * 106.39973 * 293.53722 * 8 7 3 10 10 O 1.42097 * 106.40307 * 66.45761 * 8 7 3 11 11 O 1.52200 * 107.21916 * 179.97438 * 8 7 3 12 12 C 1.35899 * 113.99988 * 74.99672 * 11 8 7 13 13 C 1.39162 * 119.93297 * 269.72691 * 12 11 8 14 14 C 1.38515 * 120.44425 * 179.72133 * 13 12 11 15 15 C 1.37671 * 120.30308 * 0.55669 * 14 13 12 16 16 C 1.40726 * 119.85728 * 359.72533 * 15 14 13 17 17 C 1.41403 * 120.21845 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00302 * 24.38978 * 17 16 15 19 19 C 1.39945 * 119.99688 * 204.39590 * 17 16 15 20 20 N 1.30826 * 120.00099 * 17.87329 * 19 17 16 21 21 Si 1.86802 * 119.99662 * 197.87752 * 19 17 16 22 22 H 1.48502 * 109.47426 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47193 * 119.99884 * 21 19 17 24 24 H 1.48497 * 109.46845 * 239.99854 * 21 19 17 25 25 C 1.38094 * 119.93455 * 90.00172 * 12 11 8 26 26 H 1.09001 * 109.47062 * 300.00869 * 1 2 3 27 27 H 1.09009 * 109.47035 * 60.00078 * 1 2 3 28 28 H 1.08995 * 109.47548 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47281 * 240.00038 * 2 1 3 30 30 H 1.09000 * 109.46859 * 119.99379 * 2 1 3 31 31 H 1.08995 * 109.47110 * 173.80126 * 5 3 2 32 32 H 1.09003 * 109.46929 * 293.80356 * 5 3 2 33 33 H 1.08995 * 109.47132 * 60.00257 * 6 5 3 34 34 H 1.09000 * 109.47109 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47885 * 300.00049 * 6 5 3 36 36 H 1.08005 * 119.77793 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.85189 * 180.28148 * 14 13 12 38 38 H 1.08007 * 120.07392 * 179.74616 * 15 14 13 39 39 H 0.97001 * 119.99558 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.14867 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7386 2.4523 -1.1453 5 6 1.6138 2.4625 1.5664 6 6 2.0864 1.5917 2.7322 7 7 3.6274 1.6594 -0.0006 8 16 4.5037 3.0646 -0.0014 9 8 4.2535 3.6927 -1.2513 10 8 4.2546 3.6936 1.2482 11 8 5.9757 2.6776 -0.0013 12 6 6.4285 2.2256 -1.2003 13 6 6.3689 0.8675 -1.4978 14 6 6.8221 0.3959 -2.7189 15 6 7.3475 1.2657 -3.6477 16 6 7.4193 2.6409 -3.3579 17 6 7.9570 3.5411 -4.3065 18 1 7.9491 3.2877 -5.3563 19 6 8.4995 4.7603 -3.8850 20 7 8.8326 4.9295 -2.6312 21 14 8.7479 6.1462 -5.1126 22 1 8.2951 5.7045 -6.4562 23 1 7.9588 7.3306 -4.6885 24 1 10.1877 6.5050 -5.1693 25 6 6.9520 3.1142 -2.1186 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0511 3.4569 1.6550 32 1 0.5268 2.5402 1.5883 33 1 3.1734 1.5139 2.7103 34 1 1.7731 2.0434 3.6734 35 1 1.6492 0.5972 2.6436 36 1 5.9628 0.1769 -0.7734 37 1 6.7672 -0.6594 -2.9415 38 1 7.7036 0.8935 -4.5971 39 1 9.2089 5.7745 -2.3392 40 1 7.0021 4.1677 -1.8864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867185027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:12 Heat of formation + Delta-G solvation = -86.331360 kcal Electronic energy + Delta-G solvation = -27336.959829 eV Core-core repulsion = 23372.774228 eV Total energy + Delta-G solvation = -3964.185601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.69067 -36.86782 -36.63671 -36.43036 -35.36329 -34.29844 -33.64412 -33.45799 -32.42262 -29.71589 -28.85446 -25.36813 -24.83616 -24.12774 -22.15937 -21.26590 -20.14479 -18.84747 -17.80644 -17.42687 -17.25007 -16.82054 -16.25238 -16.04973 -15.31892 -15.11934 -14.74356 -14.57181 -14.46667 -14.09090 -13.75159 -13.43951 -13.20033 -12.96297 -12.66746 -12.61003 -12.55301 -12.19894 -12.13350 -11.97588 -11.76334 -11.58011 -11.46984 -11.35618 -11.22347 -11.14268 -11.06756 -10.99231 -10.65026 -10.37094 -10.21095 -9.98121 -9.92145 -9.56056 -9.18339 -7.51622 -7.49027 -6.78981 -4.39622 -0.88480 1.19684 2.28881 2.63769 2.81150 2.99409 3.11220 3.17305 3.19791 3.31712 3.58942 3.95156 3.99135 4.14525 4.32602 4.36766 4.54026 4.59859 4.84037 4.97763 5.05869 5.13877 5.19414 5.29850 5.37929 5.47842 5.57986 5.76995 6.08952 6.32549 6.46548 6.72366 6.97919 7.02846 7.21391 7.50012 7.70826 7.81710 7.95155 8.17587 8.51339 8.81861 8.83320 10.16294 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.003729 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.553558 B = 7506.782730 C = 7884.386055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.495 4.495 3 S 2.312 3.688 4 O -0.913 6.913 5 C -0.599 4.599 6 C -0.143 4.143 7 N -1.513 6.513 8 S 2.765 3.235 9 O -0.967 6.967 10 O -0.999 6.999 11 O -0.652 6.652 12 C 0.074 3.926 13 C -0.231 4.231 14 C -0.084 4.084 15 C -0.216 4.216 16 C 0.115 3.885 17 C -0.453 4.453 18 H 0.086 0.914 19 C 0.072 3.928 20 N -0.790 5.790 21 Si 0.913 3.087 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.130 4.130 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.284 0.716 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.732 -9.609 9.354 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.635 4.635 3 S 2.502 3.498 4 O -0.898 6.898 5 C -0.735 4.735 6 C -0.201 4.201 7 N -1.536 6.536 8 S 2.775 3.225 9 O -0.957 6.957 10 O -0.990 6.990 11 O -0.610 6.610 12 C 0.034 3.966 13 C -0.253 4.253 14 C -0.102 4.102 15 C -0.236 4.236 16 C 0.112 3.888 17 C -0.482 4.482 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.415 5.415 21 Si 0.737 3.263 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.152 4.152 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.162 -8.609 8.974 20.393 hybrid contribution -0.096 0.660 0.299 0.730 sum -16.259 -7.950 9.272 20.335 Atomic orbital electron populations 1.21843 0.90137 1.06223 1.04052 1.29077 1.05504 1.14797 1.14134 1.11509 0.76464 0.81933 0.79873 1.93696 1.84455 1.68254 1.43389 1.30445 1.12105 1.13539 1.17377 1.21571 1.03895 0.97702 0.96908 1.76606 1.31244 1.63449 1.82308 1.02202 0.74923 0.71816 0.73518 1.93726 1.83445 1.74390 1.44150 1.93561 1.84362 1.75022 1.46061 1.85526 1.47930 1.83985 1.43530 1.18081 1.05041 0.93474 0.80025 1.20402 1.12905 0.92706 0.99244 1.20367 0.98885 0.97749 0.93222 1.21117 1.09146 0.93240 1.00100 1.17399 0.88802 0.91453 0.91164 1.19628 1.33345 1.00091 0.95150 0.89585 1.26014 0.92924 0.99713 0.95982 1.69802 1.28985 1.25693 1.16975 0.86190 0.78466 0.80347 0.81340 1.18150 1.19472 1.19888 1.21485 1.00194 0.99338 0.94215 0.90810 0.90063 0.88518 0.82536 0.83199 0.82748 0.84638 0.89612 0.89612 0.91357 0.87080 0.88035 0.88016 0.90493 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.88 37.16 0.37 -0.23 16 2 C -0.50 -3.04 6.34 37.16 0.24 -2.80 16 3 S 2.31 29.51 3.77 -98.05 -0.37 29.14 16 4 O -0.91 -16.17 17.12 -46.36 -0.79 -16.96 16 5 C -0.60 -5.54 5.99 37.15 0.22 -5.32 16 6 C -0.14 -1.06 9.69 37.15 0.36 -0.70 16 7 N -1.51 -26.86 10.69 60.35 0.65 -26.21 16 8 S 2.77 64.15 5.39 -98.05 -0.53 63.62 16 9 O -0.97 -26.09 15.57 -68.85 -1.07 -27.16 16 10 O -1.00 -21.89 15.85 -66.81 -1.06 -22.95 16 11 O -0.65 -16.58 10.22 -51.55 -0.53 -17.11 16 12 C 0.07 2.02 4.82 -39.29 -0.19 1.83 16 13 C -0.23 -5.57 9.85 -39.14 -0.39 -5.96 16 14 C -0.08 -1.92 10.02 -39.69 -0.40 -2.32 16 15 C -0.22 -5.40 9.79 -38.85 -0.38 -5.78 16 16 C 0.11 3.24 5.57 -106.85 -0.60 2.65 16 17 C -0.45 -12.47 9.05 -37.74 -0.34 -12.81 16 18 H 0.09 2.22 7.91 -52.49 -0.42 1.80 16 19 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 20 N -0.79 -21.58 10.96 55.55 0.61 -20.97 16 21 Si 0.91 19.51 29.60 -169.99 -5.03 14.48 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.13 -3.79 7.83 -38.73 -0.30 -4.09 16 26 H 0.07 0.10 7.68 -51.93 -0.40 -0.30 16 27 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.16 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.15 0.47 7.12 -51.92 -0.37 0.10 16 31 H 0.15 1.82 6.47 -51.93 -0.34 1.48 16 32 H 0.14 0.62 7.85 -51.92 -0.41 0.21 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.23 6.85 -51.93 -0.36 -0.12 16 36 H 0.11 2.34 8.06 -52.48 -0.42 1.92 16 37 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 39 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 40 H 0.13 3.98 6.16 -52.49 -0.32 3.66 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -39.24 357.66 -9.36 -48.59 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.12 Total: 3.87 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: -1.50 Total: -33.72 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 1.25 Total: -47.19 kcal Atomic # 8 Polarization: -80.73 SS G_CDS: -3.45 Total: -84.18 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 16 Polarization: 93.66 SS G_CDS: -0.90 Total: 92.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.24 -9.36 -48.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867185027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.736 kcal (2) G-P(sol) polarization free energy of solvation -39.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds