Wall clock time and date at job start Wed Apr 1 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81408 * 109.47155 * 2 1 4 4 O 1.42099 * 113.53975 * 298.45674 * 3 2 1 5 5 C 1.81398 * 107.16973 * 64.65879 * 3 2 1 6 6 C 1.52995 * 109.46977 * 53.79913 * 5 3 2 7 7 N 1.49353 * 107.51898 * 180.02562 * 3 2 1 8 8 S 1.65603 * 119.99671 * 179.97438 * 7 3 2 9 9 O 1.42099 * 106.39973 * 293.53722 * 8 7 3 10 10 O 1.42097 * 106.40307 * 66.45761 * 8 7 3 11 11 O 1.52200 * 107.21916 * 179.97438 * 8 7 3 12 12 C 1.35899 * 113.99988 * 74.99672 * 11 8 7 13 13 C 1.39162 * 119.93297 * 269.72691 * 12 11 8 14 14 C 1.38515 * 120.44425 * 179.72133 * 13 12 11 15 15 C 1.37671 * 120.30308 * 0.55669 * 14 13 12 16 16 C 1.40726 * 119.85728 * 359.72533 * 15 14 13 17 17 C 1.41403 * 120.21845 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00302 * 24.38978 * 17 16 15 19 19 C 1.39945 * 119.99688 * 204.39590 * 17 16 15 20 20 N 1.30826 * 120.00099 * 17.87329 * 19 17 16 21 21 Si 1.86802 * 119.99662 * 197.87752 * 19 17 16 22 22 H 1.48502 * 109.47426 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47193 * 119.99884 * 21 19 17 24 24 H 1.48497 * 109.46845 * 239.99854 * 21 19 17 25 25 C 1.38094 * 119.93455 * 90.00172 * 12 11 8 26 26 H 1.09001 * 109.47062 * 300.00869 * 1 2 3 27 27 H 1.09009 * 109.47035 * 60.00078 * 1 2 3 28 28 H 1.08995 * 109.47548 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47281 * 240.00038 * 2 1 3 30 30 H 1.09000 * 109.46859 * 119.99379 * 2 1 3 31 31 H 1.08995 * 109.47110 * 173.80126 * 5 3 2 32 32 H 1.09003 * 109.46929 * 293.80356 * 5 3 2 33 33 H 1.08995 * 109.47132 * 60.00257 * 6 5 3 34 34 H 1.09000 * 109.47109 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47885 * 300.00049 * 6 5 3 36 36 H 1.08005 * 119.77793 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.85189 * 180.28148 * 14 13 12 38 38 H 1.08007 * 120.07392 * 179.74616 * 15 14 13 39 39 H 0.97001 * 119.99558 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.14867 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7386 2.4523 -1.1453 5 6 1.6138 2.4625 1.5664 6 6 2.0864 1.5917 2.7322 7 7 3.6274 1.6594 -0.0006 8 16 4.5037 3.0646 -0.0014 9 8 4.2535 3.6927 -1.2513 10 8 4.2546 3.6936 1.2482 11 8 5.9757 2.6776 -0.0013 12 6 6.4285 2.2256 -1.2003 13 6 6.3689 0.8675 -1.4978 14 6 6.8221 0.3959 -2.7189 15 6 7.3475 1.2657 -3.6477 16 6 7.4193 2.6409 -3.3579 17 6 7.9570 3.5411 -4.3065 18 1 7.9491 3.2877 -5.3563 19 6 8.4995 4.7603 -3.8850 20 7 8.8326 4.9295 -2.6312 21 14 8.7479 6.1462 -5.1126 22 1 8.2951 5.7045 -6.4562 23 1 7.9588 7.3306 -4.6885 24 1 10.1877 6.5050 -5.1693 25 6 6.9520 3.1142 -2.1186 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0511 3.4569 1.6550 32 1 0.5268 2.5402 1.5883 33 1 3.1734 1.5139 2.7103 34 1 1.7731 2.0434 3.6734 35 1 1.6492 0.5972 2.6436 36 1 5.9628 0.1769 -0.7734 37 1 6.7672 -0.6594 -2.9415 38 1 7.7036 0.8935 -4.5971 39 1 9.2089 5.7745 -2.3392 40 1 7.0021 4.1677 -1.8864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867185027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:11 Heat of formation + Delta-G solvation = -117.801673 kcal Electronic energy + Delta-G solvation = -27338.324484 eV Core-core repulsion = 23372.774228 eV Total energy + Delta-G solvation = -3965.550256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62355 -38.65922 -38.42387 -37.73967 -37.18831 -35.57073 -34.86673 -34.51675 -33.21851 -31.71943 -30.84153 -27.38961 -25.34607 -24.73473 -24.09006 -23.20338 -21.73422 -20.42697 -19.61824 -19.00297 -18.63875 -18.15667 -17.56123 -17.26272 -17.04578 -16.62328 -16.33461 -16.04100 -15.75582 -15.15753 -14.85029 -14.74627 -14.40808 -14.17421 -14.02294 -13.95245 -13.81733 -13.48911 -13.39140 -13.35242 -13.25904 -13.18418 -12.97999 -12.81265 -12.57319 -12.53330 -12.44638 -12.24732 -12.15288 -12.03829 -11.91977 -11.50748 -11.49235 -11.13414 -11.00282 -9.53939 -9.48672 -8.75259 -6.47543 -1.72464 -0.46291 0.70463 0.89683 1.32627 1.35028 1.46010 1.50928 1.56303 1.69760 2.14786 2.58236 2.69047 3.30915 3.38366 3.54984 3.58124 3.65654 3.76008 3.89432 4.26209 4.32614 4.42289 4.43553 4.56197 4.73103 4.74870 4.78727 4.80804 4.89953 4.97388 5.05464 5.20766 5.21298 5.28891 5.53177 5.71955 5.81625 5.92402 6.17941 6.48900 6.77706 6.82315 8.23267 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.003729 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.553558 B = 7506.782730 C = 7884.386055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.442 4.442 3 S 2.247 3.753 4 O -0.982 6.982 5 C -0.576 4.576 6 C -0.154 4.154 7 N -1.520 6.520 8 S 2.766 3.234 9 O -1.021 7.021 10 O -1.004 7.004 11 O -0.669 6.669 12 C 0.062 3.938 13 C -0.226 4.226 14 C -0.075 4.075 15 C -0.221 4.221 16 C 0.082 3.918 17 C -0.490 4.490 18 H 0.095 0.905 19 C 0.024 3.976 20 N -0.830 5.830 21 Si 0.988 3.012 22 H -0.247 1.247 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.179 4.179 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.164 0.836 30 H 0.196 0.804 31 H 0.121 0.879 32 H 0.191 0.809 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.126 0.874 39 H 0.290 0.710 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.430 -13.490 10.404 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.585 4.585 3 S 2.446 3.554 4 O -0.968 6.968 5 C -0.715 4.715 6 C -0.212 4.212 7 N -1.545 6.545 8 S 2.776 3.224 9 O -1.012 7.012 10 O -0.994 6.994 11 O -0.626 6.626 12 C 0.022 3.978 13 C -0.247 4.247 14 C -0.093 4.093 15 C -0.241 4.241 16 C 0.079 3.921 17 C -0.518 4.518 18 H 0.113 0.887 19 C -0.190 4.190 20 N -0.455 5.455 21 Si 0.807 3.193 22 H -0.170 1.170 23 H -0.198 1.198 24 H -0.180 1.180 25 C -0.201 4.201 26 H 0.125 0.875 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.182 0.818 30 H 0.214 0.786 31 H 0.139 0.861 32 H 0.209 0.791 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.144 0.856 39 H 0.100 0.900 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.807 -12.463 9.993 24.675 hybrid contribution 0.443 1.618 0.203 1.690 sum -18.364 -10.845 10.196 23.639 Atomic orbital electron populations 1.22174 0.87331 1.08618 1.05362 1.29024 1.07149 1.05473 1.16804 1.13684 0.74925 0.86356 0.80421 1.93639 1.84399 1.71983 1.46768 1.30216 1.15202 1.11768 1.14264 1.21835 1.02659 1.00353 0.96355 1.76192 1.34077 1.60079 1.84152 1.01814 0.74739 0.73059 0.72809 1.93658 1.83994 1.76916 1.46593 1.93535 1.84095 1.76230 1.45553 1.85451 1.49651 1.84477 1.43059 1.18401 1.04786 0.94644 0.79982 1.20901 1.11644 0.91706 1.00463 1.20948 0.96426 1.00136 0.91773 1.21505 1.08711 0.92251 1.01621 1.17850 0.89507 0.93491 0.91230 1.19978 1.34735 1.01578 0.95543 0.88688 1.27037 0.92041 1.02051 0.97918 1.69893 1.29895 1.26619 1.19116 0.85084 0.79132 0.76268 0.78799 1.16980 1.19772 1.17993 1.21371 1.03979 0.98388 0.96392 0.87547 0.91236 0.84917 0.81849 0.78641 0.86108 0.79147 0.92379 0.87819 0.85963 0.83682 0.82501 0.85610 0.89969 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.19 9.88 71.98 0.71 0.53 16 2 C -0.44 -3.08 6.34 71.98 0.46 -2.62 16 3 S 2.25 54.91 3.77 -37.15 -0.14 54.77 16 4 O -0.98 -36.58 17.12 -138.34 -2.37 -38.95 16 5 C -0.58 -9.29 5.99 71.98 0.43 -8.86 16 6 C -0.15 -1.65 9.69 71.98 0.70 -0.96 16 7 N -1.52 -54.49 10.69 37.02 0.40 -54.09 16 8 S 2.77 136.93 5.39 -37.15 -0.20 136.73 16 9 O -1.02 -60.35 15.57 -116.83 -1.82 -62.17 16 10 O -1.00 -46.97 15.85 -118.78 -1.88 -48.85 16 11 O -0.67 -36.31 10.22 -61.69 -0.63 -36.94 16 12 C 0.06 3.54 4.82 22.46 0.11 3.65 16 13 C -0.23 -10.81 9.85 22.56 0.22 -10.59 16 14 C -0.07 -3.30 10.02 22.20 0.22 -3.08 16 15 C -0.22 -11.09 9.79 22.74 0.22 -10.87 16 16 C 0.08 4.87 5.57 -21.31 -0.12 4.75 16 17 C -0.49 -28.34 9.05 23.46 0.21 -28.13 16 18 H 0.10 5.08 7.91 -2.91 -0.02 5.06 16 19 C 0.02 1.34 5.14 85.26 0.44 1.77 16 20 N -0.83 -48.60 10.96 21.83 0.24 -48.36 16 21 Si 0.99 41.70 29.60 68.60 2.03 43.73 16 22 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 25 C -0.18 -11.25 7.83 22.82 0.18 -11.07 16 26 H 0.11 -0.52 7.68 -2.39 -0.02 -0.53 16 27 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 28 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.20 -0.31 7.12 -2.39 -0.02 -0.33 16 31 H 0.12 2.90 6.47 -2.39 -0.02 2.88 16 32 H 0.19 0.86 7.85 -2.39 -0.02 0.84 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 -0.04 6.85 -2.39 -0.02 -0.06 16 36 H 0.15 5.80 8.06 -2.91 -0.02 5.78 16 37 H 0.16 5.14 8.06 -2.91 -0.02 5.11 16 38 H 0.13 5.56 8.06 -2.91 -0.02 5.53 16 39 H 0.29 15.33 8.30 -92.71 -0.77 14.56 16 40 H 0.10 6.57 6.16 -2.91 -0.02 6.55 16 Total: -1.00 -101.20 357.66 0.46 -100.73 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.06 Total: 18.85 kcal Atomic # 6 Polarization: -69.25 SS G_CDS: 3.78 Total: -65.47 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: 0.63 Total: -102.45 kcal Atomic # 8 Polarization: -180.20 SS G_CDS: -6.70 Total: -186.90 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 191.84 SS G_CDS: -0.34 Total: 191.50 kcal Total: -101.20 0.46 -100.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867185027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.069 kcal (2) G-P(sol) polarization free energy of solvation -101.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds