Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99367 * 2 1 4 4 H 1.48495 * 109.47194 * 269.99834 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00151 * 3 2 1 6 6 H 1.48501 * 109.46636 * 150.00077 * 3 2 1 7 7 C 1.39945 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99909 * 169.87218 * 7 2 1 9 9 C 1.41394 * 119.99623 * 349.87919 * 7 2 1 10 10 C 1.40727 * 120.24814 * 329.65567 * 9 7 2 11 11 C 1.37599 * 119.74621 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.24805 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50198 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24535 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.12305 * 180.02562 * 14 13 12 16 16 O 1.42107 * 106.40147 * 229.04451 * 15 14 13 17 17 O 1.42102 * 106.40280 * 1.96073 * 15 14 13 18 18 N 1.65599 * 107.21875 * 115.50165 * 15 14 13 19 19 C 1.47152 * 120.97974 * 96.40362 * 18 15 14 20 20 C 1.53297 * 108.38453 * 129.44369 * 19 18 15 21 21 O 1.42964 * 109.22346 * 52.30094 * 20 19 18 22 22 C 1.42965 * 114.16230 * 297.42063 * 21 20 19 23 23 H 1.08994 * 109.51538 * 302.65364 * 22 21 20 24 24 C 1.52998 * 109.50728 * 182.55117 * 22 21 20 25 25 F 1.39900 * 109.47003 * 180.02562 * 24 22 21 26 26 F 1.39901 * 109.47625 * 300.00308 * 24 22 21 27 27 C 1.47143 * 120.98389 * 276.12390 * 18 15 14 28 28 H 0.96994 * 120.00562 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12771 * 0.02830 * 10 9 7 30 30 H 1.08003 * 119.87524 * 180.30177 * 11 10 9 31 31 H 1.08000 * 119.74552 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.87312 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.68026 * 249.16719 * 19 18 15 34 34 H 1.08997 * 109.68533 * 9.68186 * 19 18 15 35 35 H 1.08997 * 109.51543 * 172.22317 * 20 19 18 36 36 H 1.09000 * 109.51156 * 292.32374 * 20 19 18 37 37 H 1.09004 * 109.47130 * 60.00077 * 24 22 21 38 38 H 1.09002 * 109.68214 * 350.27891 * 27 18 15 39 39 H 1.08999 * 109.68503 * 110.83092 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0754 -1.2192 -0.1639 9 6 1.3176 -2.4268 0.2163 10 6 0.1634 -2.4530 1.0209 11 6 -0.5009 -3.6409 1.2235 12 6 -0.0366 -4.8092 0.6388 13 6 1.0998 -4.7955 -0.1548 14 6 1.7801 -3.6187 -0.3712 15 16 3.2239 -3.6048 -1.3810 16 8 4.2203 -2.9063 -0.6470 17 8 3.3956 -4.9337 -1.8541 18 7 2.8842 -2.6759 -2.7092 19 6 3.2722 -1.2573 -2.7607 20 6 4.0196 -1.0080 -4.0757 21 8 3.2292 -1.4900 -5.1651 22 6 2.9863 -2.8985 -5.1337 23 1 3.9369 -3.4316 -5.1193 24 6 2.1897 -3.3074 -6.3742 25 9 1.9520 -4.6857 -6.3423 26 9 0.9688 -2.6244 -6.3906 27 6 2.1910 -3.2461 -3.8752 28 1 -0.4851 0.8399 0.0004 29 1 -0.2002 -1.5440 1.4770 30 1 -1.3897 -3.6625 1.8367 31 1 -0.5645 -5.7370 0.8029 32 1 1.4526 -5.7115 -0.6050 33 1 2.3808 -0.6313 -2.7207 34 1 3.9228 -1.0238 -1.9180 35 1 4.1946 0.0609 -4.1980 36 1 4.9744 -1.5335 -4.0571 37 1 2.7581 -3.0570 -7.2699 38 1 2.1266 -4.3291 -3.7705 39 1 1.1889 -2.8237 -3.9492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867235773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = -195.579169 kcal Electronic energy + Delta-G solvation = -30324.341939 eV Core-core repulsion = 25801.578611 eV Total energy + Delta-G solvation = -4522.763328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.00139 -46.97526 -39.21758 -37.65202 -36.50796 -35.05140 -34.62115 -33.90608 -32.12875 -30.28692 -29.60995 -27.91929 -25.80210 -25.52044 -23.00325 -21.70706 -21.24737 -20.96793 -18.54422 -17.77084 -17.61875 -17.41507 -17.34995 -16.65567 -16.10655 -15.80864 -15.50837 -15.28208 -14.89370 -14.45291 -14.33682 -14.02716 -13.85036 -13.58872 -13.34101 -13.32333 -13.19516 -12.82143 -12.75463 -12.15279 -11.99280 -11.65443 -11.54322 -11.42554 -11.29659 -11.28195 -11.22264 -11.17241 -10.99550 -10.68081 -10.63146 -10.40094 -10.07178 -9.94048 -9.51946 -9.29808 -8.47678 -8.07044 -7.64096 -7.09541 -4.85106 1.31842 2.27628 2.66132 2.90717 2.95887 3.03443 3.11072 3.57891 3.69562 3.98553 4.23808 4.31981 4.35048 4.60331 4.83701 4.95019 5.02708 5.18676 5.20886 5.28274 5.36225 5.52981 5.61154 5.68864 5.97438 5.99378 6.18694 6.32607 6.34578 6.37917 6.71668 6.84787 6.93501 6.95806 7.07663 7.27934 7.45599 7.63270 7.75617 7.87434 8.27740 8.44915 8.59788 9.83659 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005845 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.428965 B = 4789.463898 C = 5898.548806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.081 3.919 3 Si 0.902 3.098 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.476 4.476 8 H 0.111 0.889 9 C 0.193 3.807 10 C -0.155 4.155 11 C -0.077 4.077 12 C -0.245 4.245 13 C -0.005 4.005 14 C -0.775 4.775 15 S 2.703 3.297 16 O -0.970 6.970 17 O -0.992 6.992 18 N -0.992 5.992 19 C 0.089 3.911 20 C 0.051 3.949 21 O -0.367 6.367 22 C 0.031 3.969 23 H 0.092 0.908 24 C 0.278 3.722 25 F -0.195 7.195 26 F -0.194 7.194 27 C 0.095 3.905 28 H 0.287 0.713 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 0.474 -9.306 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.505 4.505 8 H 0.129 0.871 9 C 0.188 3.812 10 C -0.175 4.175 11 C -0.096 4.096 12 C -0.266 4.266 13 C -0.025 4.025 14 C -0.870 4.870 15 S 2.803 3.197 16 O -0.960 6.960 17 O -0.983 6.983 18 N -0.827 5.827 19 C -0.037 4.037 20 C -0.027 4.027 21 O -0.286 6.286 22 C -0.030 4.030 23 H 0.110 0.890 24 C 0.223 3.777 25 F -0.176 7.176 26 F -0.175 7.175 27 C -0.032 4.032 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.480 0.332 -9.309 10.336 hybrid contribution -0.752 0.738 0.534 1.181 sum 3.728 1.069 -8.775 9.594 Atomic orbital electron populations 1.69778 1.07726 1.30125 1.32447 1.25983 0.94805 1.01644 0.91616 0.86361 0.81143 0.79842 0.80147 1.18439 1.19700 1.17505 1.20418 0.97600 0.90376 1.42057 0.87104 1.17016 0.89782 0.89688 0.84686 1.21524 0.98366 0.96705 1.00908 1.20930 0.97565 0.93546 0.97517 1.20515 1.00688 0.97244 1.08108 1.20245 0.93056 0.95073 0.94112 1.29787 1.28288 1.01408 1.27550 1.01044 0.74796 0.71509 0.72304 1.93472 1.57939 1.74031 1.70601 1.93445 1.86924 1.36721 1.81176 1.57689 1.73647 1.20989 1.30404 1.22232 1.01278 0.81846 0.98325 1.23134 0.93081 1.00311 0.86148 1.87855 1.73444 1.19989 1.47303 1.23300 0.99675 0.85441 0.94610 0.88976 1.21568 0.82489 0.73507 1.00100 1.93018 1.95171 1.31747 1.97706 1.93014 1.47396 1.79421 1.97683 1.21778 0.96590 1.00413 0.84407 0.90158 0.85795 0.88736 0.88605 0.87413 0.89658 0.87257 0.87250 0.92454 0.86298 0.87800 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.98 10.92 55.55 0.61 -17.37 16 2 C 0.08 1.81 5.26 -17.34 -0.09 1.72 16 3 Si 0.90 16.71 29.57 -169.99 -5.03 11.68 16 4 H -0.26 -4.52 7.11 56.52 0.40 -4.11 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 6 H -0.25 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.48 -11.37 6.65 -37.74 -0.25 -11.62 16 8 H 0.11 2.61 4.05 -52.49 -0.21 2.40 16 9 C 0.19 4.82 5.53 -106.83 -0.59 4.23 16 10 C -0.16 -3.80 8.65 -38.88 -0.34 -4.13 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 12 C -0.25 -5.35 10.05 -39.29 -0.39 -5.75 16 13 C 0.00 -0.11 9.53 -39.66 -0.38 -0.49 16 14 C -0.77 -18.37 5.96 -38.87 -0.23 -18.60 16 15 S 2.70 58.08 5.12 -107.50 -0.55 57.53 16 16 O -0.97 -22.38 14.38 -57.17 -0.82 -23.20 16 17 O -0.99 -21.96 15.77 -57.17 -0.90 -22.86 16 18 N -0.99 -18.26 3.30 -113.31 -0.37 -18.63 16 19 C 0.09 1.49 5.05 -3.53 -0.02 1.47 16 20 C 0.05 0.67 6.98 37.31 0.26 0.93 16 21 O -0.37 -5.10 10.33 -35.23 -0.36 -5.46 16 22 C 0.03 0.41 2.99 -26.79 -0.08 0.33 16 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 24 C 0.28 3.23 5.14 37.16 0.19 3.42 16 25 F -0.20 -2.48 16.98 2.25 0.04 -2.44 16 26 F -0.19 -2.73 16.64 2.25 0.04 -2.69 16 27 C 0.09 1.56 5.71 -3.75 -0.02 1.54 16 28 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 29 H 0.12 3.05 6.32 -52.49 -0.33 2.72 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 31 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 33 H 0.09 1.51 8.00 -51.93 -0.42 1.10 16 34 H 0.11 1.87 5.66 -51.93 -0.29 1.58 16 35 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 39 H 0.08 1.43 7.60 -51.93 -0.39 1.04 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -29.01 334.81 -8.72 -37.73 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.07 Total: 9.73 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -2.34 Total: -29.07 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.23 Total: -36.00 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -2.09 Total: -51.52 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.08 Total: -5.14 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: 58.08 SS G_CDS: -0.55 Total: 57.53 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.01 -8.72 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867235773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.846 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds