Wall clock time and date at job start Wed Apr 1 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99367 * 2 1 4 4 H 1.48495 * 109.47194 * 269.99834 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00151 * 3 2 1 6 6 H 1.48501 * 109.46636 * 150.00077 * 3 2 1 7 7 C 1.39945 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99909 * 169.87218 * 7 2 1 9 9 C 1.41394 * 119.99623 * 349.87919 * 7 2 1 10 10 C 1.40727 * 120.24814 * 329.65567 * 9 7 2 11 11 C 1.37599 * 119.74621 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.24805 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50198 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24535 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.12305 * 180.02562 * 14 13 12 16 16 O 1.42107 * 106.40147 * 229.04451 * 15 14 13 17 17 O 1.42102 * 106.40280 * 1.96073 * 15 14 13 18 18 N 1.65599 * 107.21875 * 115.50165 * 15 14 13 19 19 C 1.47152 * 120.97974 * 96.40362 * 18 15 14 20 20 C 1.53297 * 108.38453 * 129.44369 * 19 18 15 21 21 O 1.42964 * 109.22346 * 52.30094 * 20 19 18 22 22 C 1.42965 * 114.16230 * 297.42063 * 21 20 19 23 23 H 1.08994 * 109.51538 * 302.65364 * 22 21 20 24 24 C 1.52998 * 109.50728 * 182.55117 * 22 21 20 25 25 F 1.39900 * 109.47003 * 180.02562 * 24 22 21 26 26 F 1.39901 * 109.47625 * 300.00308 * 24 22 21 27 27 C 1.47143 * 120.98389 * 276.12390 * 18 15 14 28 28 H 0.96994 * 120.00562 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.12771 * 0.02830 * 10 9 7 30 30 H 1.08003 * 119.87524 * 180.30177 * 11 10 9 31 31 H 1.08000 * 119.74552 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.87312 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.68026 * 249.16719 * 19 18 15 34 34 H 1.08997 * 109.68533 * 9.68186 * 19 18 15 35 35 H 1.08997 * 109.51543 * 172.22317 * 20 19 18 36 36 H 1.09000 * 109.51156 * 292.32374 * 20 19 18 37 37 H 1.09004 * 109.47130 * 60.00077 * 24 22 21 38 38 H 1.09002 * 109.68214 * 350.27891 * 27 18 15 39 39 H 1.08999 * 109.68503 * 110.83092 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0754 -1.2192 -0.1639 9 6 1.3176 -2.4268 0.2163 10 6 0.1634 -2.4530 1.0209 11 6 -0.5009 -3.6409 1.2235 12 6 -0.0366 -4.8092 0.6388 13 6 1.0998 -4.7955 -0.1548 14 6 1.7801 -3.6187 -0.3712 15 16 3.2239 -3.6048 -1.3810 16 8 4.2203 -2.9063 -0.6470 17 8 3.3956 -4.9337 -1.8541 18 7 2.8842 -2.6759 -2.7092 19 6 3.2722 -1.2573 -2.7607 20 6 4.0196 -1.0080 -4.0757 21 8 3.2292 -1.4900 -5.1651 22 6 2.9863 -2.8985 -5.1337 23 1 3.9369 -3.4316 -5.1193 24 6 2.1897 -3.3074 -6.3742 25 9 1.9520 -4.6857 -6.3423 26 9 0.9688 -2.6244 -6.3906 27 6 2.1910 -3.2461 -3.8752 28 1 -0.4851 0.8399 0.0004 29 1 -0.2002 -1.5440 1.4770 30 1 -1.3897 -3.6625 1.8367 31 1 -0.5645 -5.7370 0.8029 32 1 1.4526 -5.7115 -0.6050 33 1 2.3808 -0.6313 -2.7207 34 1 3.9228 -1.0238 -1.9180 35 1 4.1946 0.0609 -4.1980 36 1 4.9744 -1.5335 -4.0571 37 1 2.7581 -3.0570 -7.2699 38 1 2.1266 -4.3291 -3.7705 39 1 1.1889 -2.8237 -3.9492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867235773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:49 Heat of formation + Delta-G solvation = -214.304166 kcal Electronic energy + Delta-G solvation = -30325.153916 eV Core-core repulsion = 25801.578611 eV Total energy + Delta-G solvation = -4523.575305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.96883 -47.96167 -40.36733 -39.41405 -38.25525 -36.80643 -35.99568 -35.58546 -33.25158 -32.05349 -31.39151 -29.06819 -27.39422 -26.89184 -24.13025 -23.46685 -22.98723 -22.17960 -20.02987 -19.47669 -19.05978 -18.55650 -18.38815 -18.00676 -17.52372 -17.22785 -16.96305 -16.71212 -16.12940 -16.01459 -15.76753 -15.38076 -15.14597 -14.95640 -14.85288 -14.67399 -14.47391 -14.32185 -13.90322 -13.79017 -13.48010 -13.23557 -13.14800 -13.05635 -12.96444 -12.85239 -12.70113 -12.51864 -12.39847 -12.18566 -12.10718 -11.68443 -11.48751 -11.38776 -11.17995 -11.00044 -9.95358 -9.76195 -9.45028 -8.79505 -6.65221 -0.33480 0.49409 0.94589 1.37908 1.46509 1.53250 2.04242 2.12182 2.15140 2.60525 2.88187 3.08620 3.23102 3.30880 3.45580 3.65737 3.74833 3.84729 4.01369 4.15693 4.21547 4.27189 4.30078 4.38595 4.46059 4.63454 4.67308 4.67987 4.91755 5.03063 5.05750 5.15175 5.24791 5.50172 5.53370 5.68564 5.82521 5.88770 5.96488 6.09460 6.47924 6.67879 6.80688 8.16347 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005845 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.428965 B = 4789.463898 C = 5898.548806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.049 3.951 3 Si 0.957 3.043 4 H -0.237 1.237 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.493 4.493 8 H 0.109 0.891 9 C 0.164 3.836 10 C -0.184 4.184 11 C -0.078 4.078 12 C -0.250 4.250 13 C -0.020 4.020 14 C -0.799 4.799 15 S 2.720 3.280 16 O -0.989 6.989 17 O -1.001 7.001 18 N -0.989 5.989 19 C 0.081 3.919 20 C 0.055 3.945 21 O -0.369 6.369 22 C 0.031 3.969 23 H 0.114 0.886 24 C 0.277 3.723 25 F -0.203 7.203 26 F -0.211 7.211 27 C 0.086 3.914 28 H 0.295 0.705 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.100 0.900 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 1.128 -10.950 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.170 4.170 3 Si 0.776 3.224 4 H -0.160 1.160 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.521 4.521 8 H 0.126 0.874 9 C 0.160 3.840 10 C -0.204 4.204 11 C -0.096 4.096 12 C -0.270 4.270 13 C -0.039 4.039 14 C -0.892 4.892 15 S 2.819 3.181 16 O -0.980 6.980 17 O -0.992 6.992 18 N -0.826 5.826 19 C -0.045 4.045 20 C -0.023 4.023 21 O -0.287 6.287 22 C -0.029 4.029 23 H 0.132 0.868 24 C 0.223 3.777 25 F -0.184 7.184 26 F -0.192 7.192 27 C -0.040 4.040 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.185 0.815 38 H 0.118 0.882 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.341 0.966 -10.945 12.217 hybrid contribution -1.085 0.473 1.068 1.594 sum 4.257 1.438 -9.877 10.851 Atomic orbital electron populations 1.69817 1.08992 1.31371 1.32554 1.26715 0.95398 1.04242 0.90606 0.85544 0.79566 0.75912 0.81347 1.16030 1.19064 1.17937 1.20533 0.97537 0.91004 1.42984 0.87384 1.17366 0.90539 0.90698 0.85408 1.21586 0.99393 0.97272 1.02148 1.21263 0.98059 0.93024 0.97285 1.20900 1.00524 0.98336 1.07241 1.20580 0.93558 0.95388 0.94418 1.30220 1.29126 1.01506 1.28397 1.00458 0.73938 0.71385 0.72341 1.93433 1.58536 1.74409 1.71631 1.93420 1.86905 1.37523 1.81319 1.57455 1.73718 1.21631 1.29825 1.22396 1.01034 0.80428 1.00594 1.23262 0.92909 1.02458 0.83669 1.87861 1.73626 1.20107 1.47128 1.23408 1.00352 0.85629 0.93561 0.86834 1.21985 0.81871 0.72807 1.01009 1.93004 1.95201 1.32469 1.97760 1.92982 1.48691 1.79791 1.97756 1.21947 0.96601 1.00063 0.85365 0.89396 0.86848 0.86008 0.85509 0.86083 0.91224 0.87968 0.84265 0.90542 0.81478 0.88187 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.82 10.92 21.83 0.24 -37.58 16 2 C 0.05 2.23 5.26 85.26 0.45 2.68 16 3 Si 0.96 33.69 29.57 68.60 2.03 35.72 16 4 H -0.24 -7.43 7.11 99.48 0.71 -6.73 16 5 H -0.27 -9.05 7.11 99.48 0.71 -8.35 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.49 -24.10 6.65 23.46 0.16 -23.95 16 8 H 0.11 5.22 4.05 -2.91 -0.01 5.21 16 9 C 0.16 8.45 5.53 -21.29 -0.12 8.33 16 10 C -0.18 -9.25 8.65 22.73 0.20 -9.06 16 11 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16 12 C -0.25 -10.78 10.05 22.46 0.23 -10.55 16 13 C -0.02 -0.90 9.53 22.22 0.21 -0.69 16 14 C -0.80 -38.71 5.96 22.73 0.14 -38.57 16 15 S 2.72 118.06 5.12 -56.49 -0.29 117.77 16 16 O -0.99 -46.27 14.38 -128.00 -1.84 -48.11 16 17 O -1.00 -44.29 15.77 -128.00 -2.02 -46.30 16 18 N -0.99 -36.24 3.30 -512.39 -1.69 -37.93 16 19 C 0.08 2.64 5.05 86.35 0.44 3.08 16 20 C 0.05 1.28 6.98 72.08 0.50 1.79 16 21 O -0.37 -9.20 10.33 -148.98 -1.54 -10.73 16 22 C 0.03 0.77 2.99 30.55 0.09 0.86 16 23 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 24 C 0.28 5.74 5.14 71.98 0.37 6.11 16 25 F -0.20 -4.79 16.98 44.97 0.76 -4.03 16 26 F -0.21 -5.63 16.64 44.97 0.75 -4.88 16 27 C 0.09 2.81 5.71 86.22 0.49 3.30 16 28 H 0.29 12.50 8.30 -92.71 -0.77 11.73 16 29 H 0.11 5.80 6.32 -2.91 -0.02 5.78 16 30 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.12 5.06 7.33 -2.91 -0.02 5.04 16 33 H 0.07 2.47 8.00 -2.39 -0.02 2.45 16 34 H 0.10 3.48 5.66 -2.39 -0.01 3.46 16 35 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.17 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.10 3.28 7.00 -2.39 -0.02 3.26 16 39 H 0.07 2.42 7.60 -2.39 -0.02 2.40 16 Total: -1.00 -63.68 334.81 0.88 -62.80 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 1.11 Total: 33.20 kcal Atomic # 6 Polarization: -63.29 SS G_CDS: 3.37 Total: -59.92 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.45 Total: -75.51 kcal Atomic # 8 Polarization: -99.75 SS G_CDS: -5.40 Total: -105.15 kcal Atomic # 9 Polarization: -10.42 SS G_CDS: 1.51 Total: -8.91 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Atomic # 16 Polarization: 118.06 SS G_CDS: -0.29 Total: 117.77 kcal Total: -63.68 0.88 -62.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867235773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.508 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds