Wall clock time and date at job start Wed Apr 1 2020 04:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48498 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47432 * 300.00642 * 3 2 1 6 6 H 1.48497 * 109.46710 * 60.01019 * 3 2 1 7 7 C 1.39951 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99854 * 167.77070 * 7 2 1 9 9 C 1.41395 * 119.99800 * 347.77800 * 7 2 1 10 10 C 1.40727 * 120.24316 * 331.40267 * 9 7 2 11 11 C 1.37605 * 119.74706 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.24321 * 0.02600 * 11 10 9 13 13 C 1.38615 * 120.50469 * 359.68135 * 12 11 10 14 14 C 1.37637 * 120.24349 * 0.59369 * 13 12 11 15 15 S 1.76207 * 120.12529 * 179.70563 * 14 13 12 16 16 O 1.42095 * 106.40084 * 1.18455 * 15 14 13 17 17 O 1.42107 * 106.39975 * 228.26653 * 15 14 13 18 18 N 1.65594 * 107.21952 * 114.72874 * 15 14 13 19 19 C 1.47426 * 125.65211 * 90.02185 * 18 15 14 20 20 C 1.54907 * 104.92825 * 155.79290 * 19 18 15 21 21 C 1.55440 * 101.45171 * 37.01086 * 20 19 18 22 22 O 1.42894 * 110.71053 * 82.88467 * 21 20 19 23 23 C 1.53000 * 110.85981 * 206.06991 * 21 20 19 24 24 F 1.39905 * 109.47260 * 53.63325 * 23 21 20 25 25 F 1.39899 * 109.47180 * 173.62926 * 23 21 20 26 26 C 1.47026 * 125.64776 * 269.99687 * 18 15 14 27 27 H 0.97003 * 119.99677 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.13038 * 359.96132 * 10 9 7 29 29 H 1.07998 * 119.87649 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.74853 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.87923 * 180.30832 * 13 12 11 32 32 H 1.08994 * 110.36919 * 274.68957 * 19 18 15 33 33 H 1.09005 * 110.36196 * 36.89896 * 19 18 15 34 34 H 1.09003 * 110.99800 * 155.13947 * 20 19 18 35 35 H 1.09000 * 111.00989 * 278.99200 * 20 19 18 36 36 H 0.96702 * 114.00488 * 66.45437 * 22 21 20 37 37 H 1.09000 * 109.47548 * 293.63295 * 23 21 20 38 38 H 1.08997 * 109.88505 * 300.50123 * 26 18 15 39 39 H 1.09006 * 109.87936 * 61.50918 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8837 2.3962 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0696 -1.2226 -0.1987 9 6 1.3249 -2.4227 0.2582 10 6 0.1753 -2.4286 1.0698 11 6 -0.4818 -3.6126 1.3144 12 6 -0.0148 -4.7969 0.7650 13 6 1.1130 -4.8021 -0.0408 14 6 1.7893 -3.6304 -0.2943 15 16 3.2272 -3.6419 -1.3129 16 8 3.4095 -4.9865 -1.7344 17 8 4.2206 -2.9052 -0.6129 18 7 2.8705 -2.7692 -2.6743 19 6 3.0745 -1.3190 -2.8434 20 6 3.1975 -1.1090 -4.3732 21 6 2.1662 -2.1406 -4.9102 22 8 0.8449 -1.5973 -4.8791 23 6 2.5316 -2.5895 -6.3265 24 9 3.8525 -3.0501 -6.3435 25 9 1.6733 -3.6198 -6.7251 26 6 2.2983 -3.3126 -3.9149 27 1 -0.4850 0.8401 0.0004 28 1 -0.1898 -1.5073 1.4993 29 1 -1.3645 -3.6194 1.9367 30 1 -0.5365 -5.7216 0.9626 31 1 1.4651 -5.7296 -0.4676 32 1 2.2196 -0.7675 -2.4522 33 1 3.9898 -1.0038 -2.3423 34 1 2.9180 -0.0929 -4.6517 35 1 4.2034 -1.3449 -4.7204 36 1 0.7093 -0.8576 -5.4870 37 1 2.4316 -1.7477 -7.0117 38 1 2.9601 -4.0750 -4.3256 39 1 1.3173 -3.7430 -3.7132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867344604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:42 Heat of formation + Delta-G solvation = -198.987254 kcal Electronic energy + Delta-G solvation = -30348.142485 eV Core-core repulsion = 25825.231371 eV Total energy + Delta-G solvation = -4522.911114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.11160 -47.09296 -39.04085 -37.59512 -36.35506 -35.45244 -34.92769 -33.91937 -30.58752 -30.19513 -29.55127 -29.17834 -25.78941 -25.50758 -22.24120 -21.65810 -21.15593 -20.77883 -18.46295 -18.14107 -17.72513 -17.44737 -17.24109 -16.95793 -16.11136 -15.55026 -15.39558 -15.13538 -14.53811 -14.37340 -13.97920 -13.90023 -13.58135 -13.45303 -13.31897 -13.07670 -12.79729 -12.72808 -12.66871 -12.29557 -12.06119 -11.97707 -11.56329 -11.51541 -11.26375 -11.23955 -11.18183 -11.13786 -11.03894 -10.70708 -10.58007 -10.48068 -10.06843 -9.88930 -9.48854 -9.25801 -8.40846 -8.01642 -7.60584 -7.07564 -4.79331 1.40116 2.33298 2.68571 2.91891 3.00626 3.05380 3.40817 3.71851 3.73942 3.81946 3.98522 4.11973 4.35917 4.42311 4.71222 4.83011 4.84914 5.25641 5.33574 5.44674 5.57873 5.67568 5.81015 5.85383 6.03721 6.07157 6.23798 6.39060 6.47722 6.55647 6.75654 6.84280 7.00045 7.12398 7.33472 7.39757 7.51162 7.68192 7.80965 7.92902 8.33659 8.48777 8.65020 9.85354 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.005809 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.604281 B = 4818.613203 C = 5901.686237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.473 4.473 8 H 0.113 0.887 9 C 0.192 3.808 10 C -0.157 4.157 11 C -0.076 4.076 12 C -0.247 4.247 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.720 3.280 16 O -0.991 6.991 17 O -0.967 6.967 18 N -1.002 6.002 19 C 0.127 3.873 20 C -0.157 4.157 21 C 0.076 3.924 22 O -0.518 6.518 23 C 0.247 3.753 24 F -0.195 7.195 25 F -0.196 7.196 26 C 0.143 3.857 27 H 0.286 0.714 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.377 0.623 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 3.479 -10.998 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.501 4.501 8 H 0.130 0.870 9 C 0.188 3.812 10 C -0.177 4.177 11 C -0.095 4.095 12 C -0.268 4.268 13 C -0.023 4.023 14 C -0.871 4.871 15 S 2.820 3.180 16 O -0.982 6.982 17 O -0.958 6.958 18 N -0.837 5.837 19 C 0.002 3.998 20 C -0.196 4.196 21 C 0.032 3.968 22 O -0.323 6.323 23 C 0.192 3.808 24 F -0.176 7.176 25 F -0.177 7.177 26 C 0.017 3.983 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.225 0.775 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.382 2.683 -10.349 10.954 hybrid contribution -0.661 1.249 -0.251 1.436 sum 1.721 3.932 -10.601 11.437 Atomic orbital electron populations 1.69814 1.07727 1.29916 1.32220 1.25986 0.94750 1.01628 0.91681 0.86327 0.81843 0.80217 0.79178 1.17211 1.19309 1.19279 1.20476 0.98199 0.90516 1.40917 0.86978 1.17013 0.89658 0.89722 0.84834 1.21514 0.98487 0.96795 1.00922 1.20911 0.97541 0.93505 0.97574 1.20497 1.00995 0.96972 1.08328 1.20242 0.93000 0.95194 0.93865 1.29829 1.28499 1.00995 1.27808 1.00552 0.74599 0.71218 0.71627 1.93444 1.86820 1.35493 1.82453 1.93479 1.57849 1.72792 1.71695 1.58518 1.79731 1.18160 1.27338 1.22108 1.03268 0.80978 0.93407 1.23573 0.99289 0.98682 0.98035 1.23264 0.85405 0.96186 0.91968 1.86832 1.27089 1.52610 1.65758 1.22505 0.72845 0.87375 0.98074 1.93000 1.36554 1.90659 1.97435 1.93019 1.70178 1.62519 1.92008 1.21369 1.00046 0.93148 0.83769 0.90289 0.85820 0.88816 0.88681 0.87442 0.89074 0.89878 0.89068 0.89070 0.77540 0.86976 0.89881 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.86 10.91 55.55 0.61 -17.25 16 2 C 0.08 1.82 4.84 -17.34 -0.08 1.74 16 3 Si 0.90 16.80 29.58 -169.99 -5.03 11.77 16 4 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.47 -11.50 6.09 -37.74 -0.23 -11.73 16 8 H 0.11 2.73 4.70 -52.48 -0.25 2.49 16 9 C 0.19 4.90 5.54 -106.83 -0.59 4.31 16 10 C -0.16 -3.91 8.66 -38.87 -0.34 -4.25 16 11 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 12 C -0.25 -5.54 10.05 -39.29 -0.39 -5.93 16 13 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 14 C -0.78 -18.96 5.96 -38.87 -0.23 -19.19 16 15 S 2.72 61.29 5.30 -107.50 -0.57 60.72 16 16 O -0.99 -23.20 16.55 -57.17 -0.95 -24.15 16 17 O -0.97 -23.43 15.00 -57.17 -0.86 -24.29 16 18 N -1.00 -19.22 3.67 -111.42 -0.41 -19.63 16 19 C 0.13 2.15 5.40 -2.53 -0.01 2.14 16 20 C -0.16 -1.88 6.24 -24.43 -0.15 -2.03 16 21 C 0.08 0.97 0.94 -88.63 -0.08 0.89 16 22 O -0.52 -6.63 13.10 -35.23 -0.46 -7.09 16 23 C 0.25 2.60 4.63 37.16 0.17 2.77 16 24 F -0.20 -2.38 15.82 2.25 0.04 -2.34 16 25 F -0.20 -2.51 17.10 2.25 0.04 -2.47 16 26 C 0.14 2.42 6.07 -3.06 -0.02 2.40 16 27 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 28 H 0.12 3.08 6.27 -52.48 -0.33 2.75 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.11 2.33 7.32 -52.49 -0.38 1.95 16 32 H 0.09 1.69 6.54 -51.93 -0.34 1.35 16 33 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.99 7.34 -51.93 -0.38 0.61 16 36 H 0.38 2.73 9.07 45.56 0.41 3.14 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.35 7.36 -51.93 -0.38 0.97 16 39 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -31.29 337.39 -8.54 -39.84 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.29 Total: 11.28 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -2.74 Total: -31.47 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.20 Total: -36.87 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -2.27 Total: -55.54 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.07 Total: -4.81 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 61.29 SS G_CDS: -0.57 Total: 60.72 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.29 -8.54 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.151 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds