Wall clock time and date at job start Wed Apr 1 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 107.16483 * 2 1 4 4 O 1.42106 * 113.54247 * 233.80628 * 2 1 3 5 5 N 1.49346 * 107.52803 * 115.34152 * 2 1 3 6 6 C 1.32425 * 120.00109 * 64.89012 * 5 2 1 7 7 C 1.41819 * 120.65088 * 0.02562 * 6 5 2 8 8 C 1.36061 * 119.78299 * 180.02562 * 7 6 5 9 9 C 1.39025 * 121.24509 * 359.97137 * 8 7 6 10 10 C 1.38296 * 121.38198 * 0.03109 * 9 8 7 11 11 C 1.38414 * 120.09858 * 359.97438 * 10 9 8 12 12 O 1.35511 * 120.60021 * 180.02562 * 11 10 9 13 13 S 1.52210 * 113.99921 * 269.95720 * 12 11 10 14 14 O 1.42095 * 104.27826 * 191.07240 * 13 12 11 15 15 O 1.42105 * 104.27424 * 318.93068 * 13 12 11 16 16 C 1.81400 * 104.44773 * 75.00234 * 13 12 11 17 17 C 1.53003 * 109.46729 * 180.02562 * 16 13 12 18 18 C 1.50704 * 109.46939 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00001 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99843 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99738 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00206 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47012 * 89.99940 * 22 20 18 24 24 H 1.48505 * 109.46954 * 209.99934 * 22 20 18 25 25 H 1.48499 * 109.46804 * 329.99573 * 22 20 18 26 26 H 1.09008 * 109.46889 * 306.19242 * 1 2 3 27 27 H 1.08996 * 109.47425 * 66.19788 * 1 2 3 28 28 H 1.08999 * 109.46833 * 186.19713 * 1 2 3 29 29 H 1.09004 * 109.46674 * 175.34233 * 3 2 1 30 30 H 1.08994 * 109.47006 * 295.33789 * 3 2 1 31 31 H 1.09003 * 109.47034 * 55.34698 * 3 2 1 32 32 H 1.08004 * 120.11163 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.38202 * 179.97438 * 8 7 6 34 34 H 1.07992 * 119.30552 * 179.74320 * 9 8 7 35 35 H 1.08002 * 119.95342 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47221 * 299.99774 * 16 13 12 37 37 H 1.08996 * 109.47521 * 60.00164 * 16 13 12 38 38 H 1.09004 * 109.46740 * 299.99646 * 17 16 13 39 39 H 1.08996 * 109.47329 * 59.99626 * 17 16 13 40 40 H 0.97006 * 119.99756 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3493 1.7333 0.0000 4 8 2.3816 -0.7693 -1.0514 5 7 2.2638 -0.6095 1.2871 6 6 1.9991 -1.8810 1.5457 7 6 1.2900 -2.6768 0.6102 8 6 1.0272 -3.9812 0.8943 9 6 1.4418 -4.5564 2.0901 10 6 2.1364 -3.8267 3.0376 11 6 2.4340 -2.4948 2.8068 12 8 3.1144 -1.7704 3.7280 13 16 2.2246 -1.0672 4.7431 14 8 3.1020 -0.1805 5.4235 15 8 1.1367 -0.5741 3.9732 16 6 1.6707 -2.3908 5.8530 17 6 0.7571 -1.8036 6.9307 18 6 0.2964 -2.9033 7.8525 19 1 0.6223 -3.9194 7.6860 20 6 -0.5411 -2.6122 8.9083 21 7 -0.9427 -3.5718 9.7130 22 14 -1.1054 -0.8548 9.1958 23 1 -2.3671 -0.6120 8.4513 24 1 -1.3378 -0.6407 10.6469 25 1 -0.0598 0.0852 8.7181 26 1 -0.3633 0.6069 0.8294 27 1 -0.3634 0.4147 -0.9402 28 1 -0.3633 -1.0217 0.1109 29 1 3.4353 1.7780 0.0835 30 1 2.0364 2.2102 -0.9288 31 1 1.8982 2.2529 0.8454 32 1 0.9590 -2.2486 -0.3245 33 1 0.4864 -4.5811 0.1774 34 1 1.2127 -5.5935 2.2852 35 1 2.4470 -4.2968 3.9590 36 1 1.1225 -3.1393 5.2808 37 1 2.5365 -2.8560 6.3242 38 1 1.3050 -1.0550 7.5030 39 1 -0.1087 -1.3387 6.4593 40 1 -1.5316 -3.3669 10.4561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867572676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:07 Heat of formation + Delta-G solvation = -53.555684 kcal Electronic energy + Delta-G solvation = -27078.667206 eV Core-core repulsion = 23115.902865 eV Total energy + Delta-G solvation = -3962.764341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.48129 -38.18017 -36.84278 -36.51598 -35.48109 -35.23923 -33.88319 -31.46326 -30.65980 -30.56839 -29.53706 -28.20188 -25.97557 -23.12330 -22.99072 -21.24250 -19.99641 -19.01858 -18.05236 -17.62635 -17.31053 -16.94902 -16.56586 -16.32261 -16.02496 -15.20704 -15.07296 -14.59247 -14.26401 -14.15995 -14.04064 -13.91434 -13.69055 -13.51686 -13.45272 -12.97872 -12.76873 -12.74315 -12.39201 -12.07041 -11.98477 -11.80566 -11.66330 -11.54554 -11.43510 -11.20170 -11.09573 -11.05925 -10.86278 -10.38900 -10.08005 -9.81753 -9.56746 -9.28928 -8.91647 -8.61468 -7.43229 -6.11597 -4.11935 -1.08694 0.61999 1.35758 1.45189 2.02883 2.60532 2.76604 3.28814 3.29232 3.36084 3.41031 3.76697 4.02727 4.21477 4.26606 4.34323 4.39954 4.50110 4.50823 4.71767 4.83881 4.93441 5.10677 5.20439 5.28206 5.34421 5.37508 5.46696 5.62821 5.70049 6.05046 6.18729 6.37362 6.42658 6.53471 6.66376 6.88831 7.01463 7.22337 7.60723 8.42949 8.90400 9.48401 11.00963 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003647 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.486048 B = 7674.847987 C = 8291.738583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.266 3.734 3 C -0.528 4.528 4 O -0.932 6.932 5 N -1.058 6.058 6 C 0.282 3.718 7 C -0.262 4.262 8 C -0.044 4.044 9 C -0.171 4.171 10 C -0.076 4.076 11 C 0.026 3.974 12 O -0.646 6.646 13 S 2.575 3.425 14 O -0.948 6.948 15 O -0.956 6.956 16 C -0.616 4.616 17 C -0.003 4.003 18 C -0.517 4.517 19 H 0.078 0.922 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.868 3.132 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.262 1.262 26 H 0.141 0.859 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 7.865 -24.960 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.464 3.536 3 C -0.687 4.687 4 O -0.918 6.918 5 N -0.936 5.936 6 C 0.165 3.835 7 C -0.287 4.287 8 C -0.064 4.064 9 C -0.192 4.192 10 C -0.097 4.097 11 C -0.025 4.025 12 O -0.603 6.603 13 S 2.675 3.325 14 O -0.946 6.946 15 O -0.955 6.955 16 C -0.745 4.745 17 C -0.042 4.042 18 C -0.556 4.556 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.695 3.305 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.186 1.186 26 H 0.160 0.840 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.762 8.564 -25.371 27.041 hybrid contribution -1.151 0.363 0.605 1.350 sum 2.611 8.927 -24.767 26.456 Atomic orbital electron populations 1.30340 1.25121 1.13418 1.11282 1.14185 0.80959 0.82231 0.76212 1.28845 1.14154 1.13053 1.12648 1.93601 1.73845 1.63109 1.61210 1.69518 1.54420 1.24422 1.45198 1.18385 0.89150 0.84878 0.91049 1.21683 1.09897 0.97511 0.99619 1.20486 0.95850 0.93816 0.96213 1.20837 1.03264 1.00624 0.94435 1.21266 0.96478 0.91246 1.00677 1.18783 1.05168 0.90095 0.88413 1.85556 1.55518 1.70026 1.49249 1.06098 0.74020 0.77112 0.75300 1.93549 1.64460 1.61603 1.75017 1.93515 1.56967 1.79031 1.65956 1.30648 1.11424 1.18046 1.14430 1.19354 0.93735 0.98069 0.93019 1.20888 1.29452 0.94770 1.10455 0.90355 1.24980 0.95490 0.97176 0.95488 1.69889 1.34614 1.32224 1.16787 0.86936 0.79992 0.85720 0.77884 1.19745 1.20796 1.18588 0.84021 0.85936 0.84120 0.83197 0.84188 0.83088 0.85608 0.85635 0.85034 0.83959 0.85460 0.85389 0.95006 0.95367 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.57 10.24 101.05 1.03 -2.53 16 2 S 2.27 18.14 4.30 -107.50 -0.46 17.68 16 3 C -0.53 -1.49 10.89 101.05 1.10 -0.39 16 4 O -0.93 -10.67 16.18 -35.23 -0.57 -11.24 16 5 N -1.06 -14.72 9.58 33.06 0.32 -14.41 16 6 C 0.28 4.47 5.84 -82.77 -0.48 3.99 16 7 C -0.26 -3.43 7.50 -39.00 -0.29 -3.73 16 8 C -0.04 -0.52 9.92 -40.07 -0.40 -0.92 16 9 C -0.17 -2.13 10.00 -39.27 -0.39 -2.52 16 10 C -0.08 -1.11 8.48 -39.50 -0.34 -1.45 16 11 C 0.03 0.44 5.00 -36.04 -0.18 0.26 16 12 O -0.65 -12.07 9.94 -50.55 -0.50 -12.57 16 13 S 2.58 51.54 5.17 -107.50 -0.56 50.98 16 14 O -0.95 -21.47 18.09 -67.04 -1.21 -22.68 16 15 O -0.96 -19.29 15.92 -67.04 -1.07 -20.36 16 16 C -0.62 -12.46 5.43 37.16 0.20 -12.26 16 17 C 0.00 -0.07 4.05 -27.88 -0.11 -0.19 16 18 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 20 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 22 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 26 H 0.14 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.14 0.96 5.92 -51.92 -0.31 0.65 16 29 H 0.15 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.14 -0.13 8.14 -51.93 -0.42 -0.56 16 31 H 0.15 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.13 1.33 4.67 -52.48 -0.24 1.08 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.14 1.82 7.52 -52.49 -0.39 1.42 16 36 H 0.13 2.33 6.62 -51.92 -0.34 1.99 16 37 H 0.13 2.38 8.14 -51.93 -0.42 1.96 16 38 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 39 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -42.60 354.60 -7.92 -50.52 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.03 Total: -0.83 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: -0.29 Total: -32.83 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 1.09 Total: -41.02 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -3.35 Total: -66.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 69.68 SS G_CDS: -1.02 Total: 68.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -42.60 -7.92 -50.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867572676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -42.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds