Wall clock time and date at job start Wed Apr 1 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 107.16483 * 2 1 4 4 O 1.42106 * 113.54247 * 233.80628 * 2 1 3 5 5 N 1.49346 * 107.52803 * 115.34152 * 2 1 3 6 6 C 1.32425 * 120.00109 * 64.89012 * 5 2 1 7 7 C 1.41819 * 120.65088 * 0.02562 * 6 5 2 8 8 C 1.36061 * 119.78299 * 180.02562 * 7 6 5 9 9 C 1.39025 * 121.24509 * 359.97137 * 8 7 6 10 10 C 1.38296 * 121.38198 * 0.03109 * 9 8 7 11 11 C 1.38414 * 120.09858 * 359.97438 * 10 9 8 12 12 O 1.35511 * 120.60021 * 180.02562 * 11 10 9 13 13 S 1.52210 * 113.99921 * 269.95720 * 12 11 10 14 14 O 1.42095 * 104.27826 * 191.07240 * 13 12 11 15 15 O 1.42105 * 104.27424 * 318.93068 * 13 12 11 16 16 C 1.81400 * 104.44773 * 75.00234 * 13 12 11 17 17 C 1.53003 * 109.46729 * 180.02562 * 16 13 12 18 18 C 1.50704 * 109.46939 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00001 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99843 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99738 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00206 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47012 * 89.99940 * 22 20 18 24 24 H 1.48505 * 109.46954 * 209.99934 * 22 20 18 25 25 H 1.48499 * 109.46804 * 329.99573 * 22 20 18 26 26 H 1.09008 * 109.46889 * 306.19242 * 1 2 3 27 27 H 1.08996 * 109.47425 * 66.19788 * 1 2 3 28 28 H 1.08999 * 109.46833 * 186.19713 * 1 2 3 29 29 H 1.09004 * 109.46674 * 175.34233 * 3 2 1 30 30 H 1.08994 * 109.47006 * 295.33789 * 3 2 1 31 31 H 1.09003 * 109.47034 * 55.34698 * 3 2 1 32 32 H 1.08004 * 120.11163 * 359.97438 * 7 6 5 33 33 H 1.07997 * 119.38202 * 179.97438 * 8 7 6 34 34 H 1.07992 * 119.30552 * 179.74320 * 9 8 7 35 35 H 1.08002 * 119.95342 * 179.97438 * 10 9 8 36 36 H 1.09004 * 109.47221 * 299.99774 * 16 13 12 37 37 H 1.08996 * 109.47521 * 60.00164 * 16 13 12 38 38 H 1.09004 * 109.46740 * 299.99646 * 17 16 13 39 39 H 1.08996 * 109.47329 * 59.99626 * 17 16 13 40 40 H 0.97006 * 119.99756 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3493 1.7333 0.0000 4 8 2.3816 -0.7693 -1.0514 5 7 2.2638 -0.6095 1.2871 6 6 1.9991 -1.8810 1.5457 7 6 1.2900 -2.6768 0.6102 8 6 1.0272 -3.9812 0.8943 9 6 1.4418 -4.5564 2.0901 10 6 2.1364 -3.8267 3.0376 11 6 2.4340 -2.4948 2.8068 12 8 3.1144 -1.7704 3.7280 13 16 2.2246 -1.0672 4.7431 14 8 3.1020 -0.1805 5.4235 15 8 1.1367 -0.5741 3.9732 16 6 1.6707 -2.3908 5.8530 17 6 0.7571 -1.8036 6.9307 18 6 0.2964 -2.9033 7.8525 19 1 0.6223 -3.9194 7.6860 20 6 -0.5411 -2.6122 8.9083 21 7 -0.9427 -3.5718 9.7130 22 14 -1.1054 -0.8548 9.1958 23 1 -2.3671 -0.6120 8.4513 24 1 -1.3378 -0.6407 10.6469 25 1 -0.0598 0.0852 8.7181 26 1 -0.3633 0.6069 0.8294 27 1 -0.3634 0.4147 -0.9402 28 1 -0.3633 -1.0217 0.1109 29 1 3.4353 1.7780 0.0835 30 1 2.0364 2.2102 -0.9288 31 1 1.8982 2.2529 0.8454 32 1 0.9590 -2.2486 -0.3245 33 1 0.4864 -4.5811 0.1774 34 1 1.2127 -5.5935 2.2852 35 1 2.4470 -4.2968 3.9590 36 1 1.1225 -3.1393 5.2808 37 1 2.5365 -2.8560 6.3242 38 1 1.3050 -1.0550 7.5030 39 1 -0.1087 -1.3387 6.4593 40 1 -1.5316 -3.3669 10.4561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867572676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:04 Heat of formation + Delta-G solvation = -88.292156 kcal Electronic energy + Delta-G solvation = -27080.173493 eV Core-core repulsion = 23115.902865 eV Total energy + Delta-G solvation = -3964.270628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.66224 -39.22820 -38.12285 -37.56250 -37.03025 -36.19997 -35.86133 -33.50379 -31.61037 -30.90969 -30.10349 -29.09979 -27.95333 -24.31665 -23.97076 -23.06712 -21.26020 -19.82533 -19.62733 -19.00752 -18.49947 -18.25146 -17.98285 -17.07244 -16.91515 -16.53381 -16.41637 -16.06640 -15.68707 -15.24867 -15.07378 -14.81128 -14.58283 -14.20368 -14.13568 -13.98324 -13.91259 -13.83934 -13.76640 -13.35766 -13.19827 -13.18999 -13.06801 -13.03535 -12.94422 -12.77293 -12.45412 -12.24555 -11.96439 -11.92263 -11.70381 -11.66955 -11.19235 -10.82550 -10.62331 -9.99464 -8.40856 -8.34580 -6.40630 -1.56651 -0.80980 0.30837 0.43298 1.32836 1.34956 1.38310 1.46211 1.48147 1.95003 2.31708 2.54964 2.71196 2.98693 2.99185 3.16719 3.54166 3.81621 3.89637 3.94445 3.98676 3.99919 4.03883 4.13711 4.16988 4.32104 4.43974 4.54911 4.55429 4.77640 4.93591 5.03591 5.06125 5.08472 5.18781 5.42142 5.47722 5.55753 5.73031 6.19083 6.26304 6.64405 7.23335 8.81066 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.003647 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.486048 B = 7674.847987 C = 8291.738583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.252 3.748 3 C -0.504 4.504 4 O -0.977 6.977 5 N -1.117 6.117 6 C 0.279 3.721 7 C -0.280 4.280 8 C -0.033 4.033 9 C -0.185 4.185 10 C -0.083 4.083 11 C -0.043 4.043 12 O -0.642 6.642 13 S 2.594 3.406 14 O -0.982 6.982 15 O -0.960 6.960 16 C -0.619 4.619 17 C -0.009 4.009 18 C -0.529 4.529 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.940 5.940 22 Si 0.926 3.074 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.251 1.251 26 H 0.153 0.847 27 H 0.170 0.830 28 H 0.130 0.870 29 H 0.152 0.848 30 H 0.190 0.810 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 10.244 -27.830 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.456 3.544 3 C -0.664 4.664 4 O -0.963 6.963 5 N -0.992 5.992 6 C 0.160 3.840 7 C -0.305 4.305 8 C -0.052 4.052 9 C -0.206 4.206 10 C -0.104 4.104 11 C -0.094 4.094 12 O -0.600 6.600 13 S 2.693 3.307 14 O -0.981 6.981 15 O -0.958 6.958 16 C -0.747 4.747 17 C -0.048 4.048 18 C -0.568 4.568 19 H 0.066 0.934 20 C -0.184 4.184 21 N -0.580 5.580 22 Si 0.748 3.252 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.175 1.175 26 H 0.171 0.829 27 H 0.188 0.812 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.208 0.792 31 H 0.187 0.813 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.203 10.924 -28.212 30.333 hybrid contribution -0.716 -0.321 1.202 1.435 sum 1.487 10.603 -27.010 29.054 Atomic orbital electron populations 1.30101 1.19848 1.13646 1.14454 1.13969 0.82215 0.84773 0.73447 1.28917 1.14419 1.06978 1.16120 1.93567 1.75156 1.66648 1.60940 1.69199 1.58731 1.24090 1.47149 1.18745 0.88133 0.86258 0.90838 1.22041 1.10001 0.98173 1.00291 1.20997 0.94257 0.93710 0.96274 1.21193 1.03178 1.01756 0.94434 1.21530 0.96478 0.90862 1.01553 1.19362 1.08961 0.91135 0.89904 1.85532 1.54877 1.70320 1.49281 1.05632 0.73603 0.76541 0.74920 1.93491 1.65364 1.63031 1.76173 1.93470 1.57449 1.79165 1.65735 1.30616 1.11188 1.19028 1.13842 1.19312 0.94849 0.97008 0.93616 1.21165 1.29416 0.94710 1.11460 0.93360 1.25878 0.95635 1.01727 0.95196 1.70016 1.35671 1.34624 1.17640 0.86006 0.80311 0.80350 0.78487 1.18001 1.19797 1.17469 0.82885 0.81215 0.85153 0.83022 0.79243 0.81289 0.83492 0.81941 0.82487 0.83510 0.84068 0.84589 0.95158 0.94483 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -4.39 10.24 113.37 1.16 -3.23 16 2 S 2.25 31.14 4.30 -56.49 -0.24 30.90 16 3 C -0.50 -0.77 10.89 113.37 1.24 0.47 16 4 O -0.98 -21.26 16.18 -148.98 -2.41 -23.67 16 5 N -1.12 -30.71 9.58 -49.30 -0.47 -31.18 16 6 C 0.28 8.91 5.84 42.19 0.25 9.16 16 7 C -0.28 -7.10 7.50 22.65 0.17 -6.93 16 8 C -0.03 -0.73 9.92 21.95 0.22 -0.51 16 9 C -0.19 -4.50 10.00 22.47 0.22 -4.27 16 10 C -0.08 -2.52 8.48 22.33 0.19 -2.33 16 11 C -0.04 -1.54 5.00 24.56 0.12 -1.42 16 12 O -0.64 -24.99 9.94 -57.23 -0.57 -25.56 16 13 S 2.59 105.95 5.17 -56.49 -0.29 105.66 16 14 O -0.98 -45.51 18.09 -118.57 -2.15 -47.65 16 15 O -0.96 -38.86 15.92 -118.57 -1.89 -40.75 16 16 C -0.62 -25.69 5.43 71.98 0.39 -25.30 16 17 C -0.01 -0.46 4.05 29.85 0.12 -0.34 16 18 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 19 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 20 C 0.01 0.83 5.47 84.65 0.46 1.29 16 21 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 22 Si 0.93 44.27 27.47 68.60 1.88 46.16 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 26 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.17 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.13 1.38 5.92 -2.39 -0.01 1.37 16 29 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.19 -1.53 8.14 -2.39 -0.02 -1.55 16 31 H 0.17 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.15 2.88 4.67 -2.91 -0.01 2.86 16 33 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.15 3.98 7.52 -2.91 -0.02 3.96 16 36 H 0.14 5.36 6.62 -2.39 -0.02 5.34 16 37 H 0.14 5.29 8.14 -2.39 -0.02 5.27 16 38 H 0.03 1.50 7.20 -2.38 -0.02 1.48 16 39 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 40 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -97.92 354.60 -0.04 -97.96 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.01 Total: 10.52 kcal Atomic # 6 Polarization: -68.89 SS G_CDS: 4.79 Total: -64.10 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -0.17 Total: -89.45 kcal Atomic # 8 Polarization: -130.62 SS G_CDS: -7.01 Total: -137.64 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: 137.09 SS G_CDS: -0.53 Total: 136.56 kcal Total: -97.92 -0.04 -97.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867572676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.665 kcal (2) G-P(sol) polarization free energy of solvation -97.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds