Wall clock time and date at job start Wed Apr 1 2020 04:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81407 * 109.46874 * 2 1 4 4 O 1.42100 * 110.54324 * 68.37613 * 3 2 1 5 5 O 1.42099 * 110.54053 * 291.62581 * 3 2 1 6 6 N 1.65594 * 104.45072 * 179.97438 * 3 2 1 7 7 C 1.46505 * 119.99875 * 64.99674 * 6 3 2 8 8 C 1.53008 * 109.47059 * 165.00110 * 7 6 3 9 9 C 1.52991 * 109.47109 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47205 * 180.02562 * 9 8 7 11 11 C 1.35003 * 117.00149 * 180.02562 * 10 9 8 12 12 O 1.21684 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.41747 * 119.99923 * 179.97438 * 11 10 9 14 14 S 1.75842 * 125.45707 * 0.13991 * 13 11 10 15 15 C 1.75655 * 91.48901 * 180.18322 * 14 13 11 16 16 C 1.32870 * 110.87086 * 359.81856 * 15 14 13 17 17 C 1.39684 * 115.27500 * 359.97438 * 16 15 14 18 18 C 1.40505 * 123.35789 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99457 * 155.41612 * 18 17 16 20 20 C 1.40336 * 120.00101 * 335.41110 * 18 17 16 21 21 N 1.30620 * 120.00361 * 335.47078 * 20 18 17 22 22 Si 1.86797 * 119.99801 * 155.47733 * 20 18 17 23 23 H 1.48503 * 109.47432 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.46941 * 299.99475 * 22 20 18 25 25 H 1.48498 * 109.47561 * 59.99853 * 22 20 18 26 26 H 1.08994 * 109.47336 * 299.99738 * 1 2 3 27 27 H 1.09002 * 109.46885 * 60.00455 * 1 2 3 28 28 H 1.09006 * 109.46594 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47336 * 240.00262 * 2 1 3 30 30 H 1.08995 * 109.47535 * 119.99392 * 2 1 3 31 31 H 0.96997 * 120.00493 * 245.00279 * 6 3 2 32 32 H 1.08999 * 109.47030 * 45.00920 * 7 6 3 33 33 H 1.08994 * 109.47339 * 284.99754 * 7 6 3 34 34 H 1.08997 * 109.46849 * 59.99802 * 8 7 6 35 35 H 1.08999 * 109.46855 * 300.00457 * 8 7 6 36 36 H 1.08997 * 109.47677 * 60.00002 * 9 8 7 37 37 H 1.09008 * 109.47189 * 299.99603 * 9 8 7 38 38 H 1.07993 * 124.56376 * 179.84035 * 15 14 13 39 39 H 1.07994 * 122.36289 * 180.02562 * 16 15 14 40 40 H 0.97004 * 119.99984 * 356.12734 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5655 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9626 1.2836 -1.0749 9 6 6.6761 0.6592 -2.2756 10 8 8.0726 0.9544 -2.2063 11 6 8.8508 0.4728 -3.1988 12 8 8.3553 -0.1804 -4.0980 13 6 10.2451 0.7282 -3.1935 14 16 11.1090 1.6479 -1.9687 15 6 12.6366 1.4108 -2.8027 16 6 12.4669 0.6896 -3.9057 17 6 11.1535 0.2866 -4.1585 18 6 10.7822 -0.4803 -5.2757 19 1 9.8909 -1.0892 -5.2405 20 6 11.5694 -0.4550 -6.4372 21 7 12.3303 0.5765 -6.6882 22 14 11.5288 -1.8966 -7.6245 23 1 12.4429 -1.6260 -8.7631 24 1 11.9663 -3.1293 -6.9214 25 1 10.1457 -2.0808 -8.1325 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.2982 1.8768 0.7622 32 1 4.0546 1.3768 -2.0706 33 1 4.3238 -0.1133 -1.1348 34 1 6.3756 0.8740 -0.1531 35 1 6.1063 2.3640 -1.0888 36 1 6.2631 1.0691 -3.1973 37 1 6.5324 -0.4213 -2.2621 38 1 13.5860 1.7985 -2.4643 39 1 13.2865 0.4325 -4.5602 40 1 12.3093 1.3489 -6.1017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:00 Heat of formation + Delta-G solvation = -156.011569 kcal Electronic energy + Delta-G solvation = -24920.091307 eV Core-core repulsion = 20952.884145 eV Total energy + Delta-G solvation = -3967.207162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -39.28422 -37.46437 -37.26402 -36.46671 -36.21723 -35.00943 -33.59610 -33.30004 -31.52107 -29.25612 -26.77179 -25.10265 -24.50761 -22.94608 -21.80132 -20.72678 -19.58456 -19.21976 -18.05922 -17.72107 -16.92687 -16.73256 -16.56303 -16.12758 -15.69359 -15.20444 -14.72736 -14.56879 -14.49028 -14.12326 -13.75636 -13.68537 -13.28175 -13.01588 -12.93761 -12.76096 -12.41036 -12.31175 -12.23603 -12.02977 -12.00907 -11.74544 -11.67851 -11.33952 -11.19279 -11.10168 -10.95406 -10.81763 -10.55553 -10.24994 -9.84576 -9.79412 -9.74149 -9.30008 -8.90535 -7.90707 -7.53803 -7.50819 -4.80577 -0.09452 1.77001 2.36419 2.92640 2.94517 3.00292 3.21907 3.41701 3.47761 3.54666 3.73031 3.76852 3.85277 4.13817 4.14454 4.38669 4.61557 4.72634 4.80857 4.91816 5.05537 5.09739 5.22736 5.32107 5.40593 5.45142 5.53077 5.70391 5.80479 6.04254 6.09440 6.41001 6.62568 6.74976 6.86276 7.06560 7.19054 7.47375 7.66256 7.79770 8.22642 8.45416 9.26209 9.53347 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.002072 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.034717 B =13509.784839 C =14756.267044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.613 3.387 4 O -0.959 6.959 5 O -0.953 6.953 6 N -1.119 6.119 7 C 0.116 3.884 8 C -0.124 4.124 9 C 0.074 3.926 10 O -0.370 6.370 11 C 0.531 3.469 12 O -0.552 6.552 13 C -0.421 4.421 14 S 0.000 6.000 15 C -0.183 4.183 16 C -0.149 4.149 17 C 0.109 3.891 18 C -0.405 4.405 19 H 0.114 0.886 20 C 0.026 3.974 21 N -0.756 5.756 22 Si 1.074 2.926 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.267 1.267 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.419 0.581 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -2.477 9.595 16.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.763 4.763 3 S 2.705 3.295 4 O -0.950 6.950 5 O -0.943 6.943 6 N -0.879 5.879 7 C -0.010 4.010 8 C -0.163 4.163 9 C -0.002 4.002 10 O -0.290 6.290 11 C 0.389 3.611 12 O -0.449 6.449 13 C -0.537 4.537 14 S 0.257 5.743 15 C -0.318 4.318 16 C -0.182 4.182 17 C 0.098 3.902 18 C -0.435 4.435 19 H 0.131 0.869 20 C -0.200 4.200 21 N -0.378 5.378 22 Si 0.895 3.105 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.192 1.192 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.254 0.746 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.161 0.839 39 H 0.147 0.853 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.653 -1.675 9.110 16.498 hybrid contribution 0.234 -0.696 0.566 0.927 sum -13.419 -2.371 9.676 16.713 Atomic orbital electron populations 1.21507 0.90431 1.05144 1.03517 1.30506 1.07349 1.26562 1.11834 1.04946 0.73068 0.77189 0.74323 1.93608 1.83161 1.73021 1.45177 1.93619 1.83288 1.71898 1.45519 1.55541 1.25956 1.78176 1.28204 1.21225 0.93756 0.97615 0.88437 1.21659 0.92373 1.02994 0.99298 1.22115 0.80662 0.99743 0.97671 1.86169 1.18780 1.73536 1.50475 1.18175 0.85932 0.77899 0.79132 1.90711 1.74743 1.42224 1.37202 1.20781 0.92541 1.29684 1.10686 1.83262 0.99397 1.60937 1.30731 1.25251 1.00937 1.05091 1.00527 1.20432 0.97825 1.01798 0.98189 1.16865 0.89451 0.90357 0.93480 1.21211 1.08858 1.17201 0.96193 0.86874 1.27711 0.90671 1.01951 0.99685 1.70440 1.27784 1.04085 1.35472 0.83488 0.78423 0.73375 0.75177 1.19383 1.19354 1.19194 0.90946 0.90843 0.89960 0.84905 0.84859 0.74587 0.89659 0.91395 0.90223 0.89983 0.92106 0.92299 0.83872 0.85344 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.92 37.16 0.37 -0.43 16 2 C -0.63 -3.46 6.79 37.16 0.25 -3.21 16 3 S 2.61 22.94 5.46 -107.50 -0.59 22.35 16 4 O -0.96 -11.26 18.08 -57.54 -1.04 -12.30 16 5 O -0.95 -11.94 17.50 -57.54 -1.01 -12.95 16 6 N -1.12 -9.06 5.89 -10.61 -0.06 -9.12 16 7 C 0.12 1.05 6.13 -4.04 -0.02 1.02 16 8 C -0.12 -1.45 5.73 -26.73 -0.15 -1.60 16 9 C 0.07 1.21 5.38 37.15 0.20 1.41 16 10 O -0.37 -7.86 9.87 -41.33 -0.41 -8.27 16 11 C 0.53 13.34 7.73 32.07 0.25 13.59 16 12 O -0.55 -14.78 14.10 -19.40 -0.27 -15.06 16 13 C -0.42 -10.70 6.36 -37.70 -0.24 -10.94 16 14 S 0.00 0.00 23.02 -107.50 -2.47 -2.48 16 15 C -0.18 -3.76 11.11 28.88 0.32 -3.44 16 16 C -0.15 -3.41 8.03 -40.89 -0.33 -3.74 16 17 C 0.11 2.79 5.26 -107.96 -0.57 2.22 16 18 C -0.40 -10.44 8.34 -37.94 -0.32 -10.76 16 19 H 0.11 3.07 6.13 -52.49 -0.32 2.75 16 20 C 0.03 0.61 5.11 -17.28 -0.09 0.52 16 21 N -0.76 -18.11 12.52 55.57 0.70 -17.41 16 22 Si 1.07 19.93 30.00 -169.99 -5.10 14.83 16 23 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 24 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 25 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.42 2.91 8.62 -34.47 -0.30 2.62 16 32 H 0.09 0.80 7.70 -51.93 -0.40 0.41 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 37 H 0.06 0.92 8.13 -51.92 -0.42 0.50 16 38 H 0.14 2.42 8.06 -52.49 -0.42 1.99 16 39 H 0.13 2.85 6.82 -52.49 -0.36 2.49 16 40 H 0.30 7.43 6.50 -40.82 -0.27 7.16 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -33.80 368.84 -10.11 -43.92 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.09 Total: 6.28 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -0.33 Total: -15.36 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.63 Total: -26.53 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.73 Total: -48.57 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.10 Total: 14.83 kcal Atomic # 16 Polarization: 22.93 SS G_CDS: -3.06 Total: 19.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.80 -10.11 -43.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.095 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds