Wall clock time and date at job start Wed Apr 1 2020 04:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81407 * 109.46874 * 2 1 4 4 O 1.42100 * 110.54324 * 68.37613 * 3 2 1 5 5 O 1.42099 * 110.54053 * 291.62581 * 3 2 1 6 6 N 1.65594 * 104.45072 * 179.97438 * 3 2 1 7 7 C 1.46505 * 119.99875 * 64.99674 * 6 3 2 8 8 C 1.53008 * 109.47059 * 165.00110 * 7 6 3 9 9 C 1.52991 * 109.47109 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47205 * 180.02562 * 9 8 7 11 11 C 1.35003 * 117.00149 * 180.02562 * 10 9 8 12 12 O 1.21684 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.41747 * 119.99923 * 179.97438 * 11 10 9 14 14 S 1.75842 * 125.45707 * 0.13991 * 13 11 10 15 15 C 1.75655 * 91.48901 * 180.18322 * 14 13 11 16 16 C 1.32870 * 110.87086 * 359.81856 * 15 14 13 17 17 C 1.39684 * 115.27500 * 359.97438 * 16 15 14 18 18 C 1.40505 * 123.35789 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99457 * 155.41612 * 18 17 16 20 20 C 1.40336 * 120.00101 * 335.41110 * 18 17 16 21 21 N 1.30620 * 120.00361 * 335.47078 * 20 18 17 22 22 Si 1.86797 * 119.99801 * 155.47733 * 20 18 17 23 23 H 1.48503 * 109.47432 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.46941 * 299.99475 * 22 20 18 25 25 H 1.48498 * 109.47561 * 59.99853 * 22 20 18 26 26 H 1.08994 * 109.47336 * 299.99738 * 1 2 3 27 27 H 1.09002 * 109.46885 * 60.00455 * 1 2 3 28 28 H 1.09006 * 109.46594 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47336 * 240.00262 * 2 1 3 30 30 H 1.08995 * 109.47535 * 119.99392 * 2 1 3 31 31 H 0.96997 * 120.00493 * 245.00279 * 6 3 2 32 32 H 1.08999 * 109.47030 * 45.00920 * 7 6 3 33 33 H 1.08994 * 109.47339 * 284.99754 * 7 6 3 34 34 H 1.08997 * 109.46849 * 59.99802 * 8 7 6 35 35 H 1.08999 * 109.46855 * 300.00457 * 8 7 6 36 36 H 1.08997 * 109.47677 * 60.00002 * 9 8 7 37 37 H 1.09008 * 109.47189 * 299.99603 * 9 8 7 38 38 H 1.07993 * 124.56376 * 179.84035 * 15 14 13 39 39 H 1.07994 * 122.36289 * 180.02562 * 16 15 14 40 40 H 0.97004 * 119.99984 * 356.12734 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5655 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9626 1.2836 -1.0749 9 6 6.6761 0.6592 -2.2756 10 8 8.0726 0.9544 -2.2063 11 6 8.8508 0.4728 -3.1988 12 8 8.3553 -0.1804 -4.0980 13 6 10.2451 0.7282 -3.1935 14 16 11.1090 1.6479 -1.9687 15 6 12.6366 1.4108 -2.8027 16 6 12.4669 0.6896 -3.9057 17 6 11.1535 0.2866 -4.1585 18 6 10.7822 -0.4803 -5.2757 19 1 9.8909 -1.0892 -5.2405 20 6 11.5694 -0.4550 -6.4372 21 7 12.3303 0.5765 -6.6882 22 14 11.5288 -1.8966 -7.6245 23 1 12.4429 -1.6260 -8.7631 24 1 11.9663 -3.1293 -6.9214 25 1 10.1457 -2.0808 -8.1325 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 4.2982 1.8768 0.7622 32 1 4.0546 1.3768 -2.0706 33 1 4.3238 -0.1133 -1.1348 34 1 6.3756 0.8740 -0.1531 35 1 6.1063 2.3640 -1.0888 36 1 6.2631 1.0691 -3.1973 37 1 6.5324 -0.4213 -2.2621 38 1 13.5860 1.7985 -2.4643 39 1 13.2865 0.4325 -4.5602 40 1 12.3093 1.3489 -6.1017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:00 Heat of formation + Delta-G solvation = -179.716820 kcal Electronic energy + Delta-G solvation = -24921.119244 eV Core-core repulsion = 20952.884145 eV Total energy + Delta-G solvation = -3968.235099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06236 -39.02224 -38.25642 -37.55165 -37.07209 -36.56426 -35.09856 -34.03710 -32.61514 -31.03205 -28.51039 -26.33421 -24.96941 -24.64235 -22.88218 -22.43623 -21.01131 -20.30847 -19.54578 -18.72993 -18.58071 -17.65366 -17.56635 -17.32143 -17.09178 -16.32494 -16.06110 -15.87261 -15.65207 -15.35303 -15.10224 -15.05027 -14.35497 -14.10858 -13.97264 -13.84358 -13.60175 -13.43041 -13.33024 -13.26395 -13.14612 -12.84962 -12.75167 -12.60088 -12.45799 -12.40924 -12.35049 -12.09516 -11.88690 -11.59244 -11.55697 -11.31327 -11.07742 -10.80129 -10.44383 -9.76522 -9.38776 -9.29893 -6.71394 -0.76001 -0.03955 1.20654 1.35986 1.47509 1.64541 1.65389 1.79544 1.82788 2.21539 2.24361 2.29347 2.79017 3.02987 3.20905 3.66058 3.81235 3.87515 3.89377 4.00761 4.23552 4.34903 4.36966 4.40116 4.49164 4.64844 4.68632 4.72595 4.84936 4.96431 5.01378 5.08993 5.11533 5.14983 5.25447 5.36894 5.64097 5.74726 5.94359 6.02224 6.33588 6.54536 7.38067 7.66313 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.002072 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.034717 B =13509.784839 C =14756.267044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.609 4.609 3 S 2.616 3.384 4 O -0.994 6.994 5 O -0.999 6.999 6 N -1.116 6.116 7 C 0.116 3.884 8 C -0.113 4.113 9 C 0.064 3.936 10 O -0.372 6.372 11 C 0.524 3.476 12 O -0.581 6.581 13 C -0.463 4.463 14 S 0.036 5.964 15 C -0.158 4.158 16 C -0.175 4.175 17 C 0.090 3.910 18 C -0.436 4.436 19 H 0.090 0.910 20 C 0.001 3.999 21 N -0.762 5.762 22 Si 1.120 2.880 23 H -0.257 1.257 24 H -0.254 1.254 25 H -0.265 1.265 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.425 0.575 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.188 0.812 39 H 0.132 0.868 40 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.955 -3.596 10.615 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.742 4.742 3 S 2.712 3.288 4 O -0.985 6.985 5 O -0.989 6.989 6 N -0.876 5.876 7 C -0.010 4.010 8 C -0.152 4.152 9 C -0.012 4.012 10 O -0.291 6.291 11 C 0.382 3.618 12 O -0.481 6.481 13 C -0.579 4.579 14 S 0.293 5.707 15 C -0.293 4.293 16 C -0.208 4.208 17 C 0.079 3.921 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.221 4.221 21 N -0.383 5.383 22 Si 0.935 3.065 23 H -0.181 1.181 24 H -0.178 1.178 25 H -0.190 1.190 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.261 0.739 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.205 0.795 39 H 0.150 0.850 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.442 -2.717 10.177 17.077 hybrid contribution 0.080 -0.308 0.384 0.499 sum -13.362 -3.026 10.561 17.298 Atomic orbital electron populations 1.21698 0.90235 1.06477 1.03662 1.30306 1.07411 1.22333 1.14194 1.04663 0.72839 0.78631 0.72636 1.93558 1.83584 1.75168 1.46155 1.93561 1.83876 1.74458 1.47028 1.55326 1.25705 1.78502 1.28071 1.21236 0.91648 0.99564 0.88535 1.21593 0.93709 1.02273 0.97615 1.22521 0.78290 1.00726 0.99621 1.86126 1.21081 1.72961 1.48900 1.18361 0.86516 0.77572 0.79346 1.90673 1.75526 1.43499 1.38420 1.21300 0.93442 1.30742 1.12381 1.82991 0.99062 1.59579 1.29086 1.25753 1.02260 1.02497 0.98779 1.20378 0.96755 1.03971 0.99738 1.17314 0.90920 0.90210 0.93615 1.21256 1.09144 1.18388 0.97781 0.89219 1.28951 0.89437 1.03482 1.00211 1.70531 1.28394 1.04093 1.35307 0.82970 0.78743 0.71040 0.73782 1.18062 1.17826 1.18977 0.90766 0.91085 0.87909 0.82871 0.82286 0.73940 0.90364 0.88225 0.88822 0.90597 0.92952 0.91631 0.79452 0.85042 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.92 71.98 0.71 -0.66 16 2 C -0.61 -4.88 6.79 71.98 0.49 -4.39 16 3 S 2.62 43.76 5.46 -56.49 -0.31 43.45 16 4 O -0.99 -23.09 18.08 -127.65 -2.31 -25.40 16 5 O -1.00 -25.25 17.50 -127.65 -2.23 -27.48 16 6 N -1.12 -16.51 5.89 -187.48 -1.10 -17.62 16 7 C 0.12 1.91 6.13 86.38 0.53 2.44 16 8 C -0.11 -2.51 5.73 30.59 0.18 -2.33 16 9 C 0.06 2.07 5.38 71.98 0.39 2.46 16 10 O -0.37 -15.92 9.87 -59.22 -0.58 -16.51 16 11 C 0.52 26.97 7.73 68.69 0.53 27.50 16 12 O -0.58 -32.38 14.10 19.23 0.27 -32.11 16 13 C -0.46 -23.87 6.36 23.49 0.15 -23.72 16 14 S 0.04 1.50 23.02 -56.49 -1.30 0.20 16 15 C -0.16 -6.15 11.11 66.64 0.74 -5.41 16 16 C -0.18 -7.95 8.03 21.44 0.17 -7.78 16 17 C 0.09 4.69 5.26 -22.02 -0.12 4.58 16 18 C -0.44 -23.22 8.34 23.33 0.19 -23.02 16 19 H 0.09 5.11 6.13 -2.91 -0.02 5.09 16 20 C 0.00 0.07 5.11 85.38 0.44 0.51 16 21 N -0.76 -36.75 12.52 21.89 0.27 -36.47 16 22 Si 1.12 39.93 30.00 68.60 2.06 41.99 16 23 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 24 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 25 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 5.36 8.62 -96.75 -0.83 4.52 16 32 H 0.08 1.42 7.70 -2.39 -0.02 1.40 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 37 H 0.07 2.02 8.13 -2.38 -0.02 2.00 16 38 H 0.19 5.54 8.06 -2.91 -0.02 5.52 16 39 H 0.13 5.81 6.82 -2.91 -0.02 5.79 16 40 H 0.29 14.59 6.50 -92.70 -0.60 13.98 16 Total: -1.00 -75.96 368.84 -0.42 -76.38 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.41 Total: 23.40 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.40 Total: -29.84 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.83 Total: -54.09 kcal Atomic # 8 Polarization: -96.64 SS G_CDS: -4.85 Total: -101.49 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.06 Total: 41.99 kcal Atomic # 16 Polarization: 45.26 SS G_CDS: -1.61 Total: 43.65 kcal Total: -75.96 -0.42 -76.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.334 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds