Wall clock time and date at job start Wed Apr 1 2020 04:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47197 * 239.99908 * 3 2 1 5 5 H 1.48504 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47430 * 119.99633 * 3 2 1 7 7 C 1.37875 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47231 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47246 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54058 * 68.37577 * 11 10 9 13 13 O 1.42094 * 110.54303 * 291.62858 * 11 10 9 14 14 N 1.65597 * 104.44819 * 179.97438 * 11 10 9 15 15 C 1.46500 * 120.00048 * 65.00623 * 14 11 10 16 16 C 1.52997 * 109.47195 * 164.99749 * 15 14 11 17 17 H 1.09003 * 109.47141 * 59.99727 * 16 15 14 18 18 O 1.42901 * 109.47043 * 299.99957 * 16 15 14 19 19 C 1.53001 * 109.47374 * 179.97438 * 16 15 14 20 20 C 1.50693 * 109.47605 * 184.99790 * 19 16 15 21 21 C 1.38263 * 119.99161 * 89.99509 * 20 19 16 22 22 C 1.38227 * 120.02488 * 179.72424 * 21 20 19 23 23 C 1.38234 * 120.01430 * 0.28273 * 22 21 20 24 24 C 1.38334 * 119.98337 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.00894 * 179.97438 * 24 23 22 26 26 C 1.38190 * 119.99673 * 270.27943 * 20 19 16 27 27 H 0.97002 * 120.00095 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47471 * 59.99261 * 9 7 2 29 29 H 1.09001 * 109.46675 * 299.99330 * 9 7 2 30 30 H 1.09006 * 109.46987 * 59.99532 * 10 9 7 31 31 H 1.08997 * 109.47315 * 300.00014 * 10 9 7 32 32 H 0.97004 * 120.00001 * 245.00120 * 14 11 10 33 33 H 1.09003 * 109.47299 * 44.99573 * 15 14 11 34 34 H 1.08998 * 109.46750 * 284.99255 * 15 14 11 35 35 H 0.96708 * 114.00018 * 299.99654 * 18 16 15 36 36 H 1.08998 * 109.46818 * 64.99807 * 19 16 15 37 37 H 1.09001 * 109.47102 * 305.00256 * 19 16 15 38 38 H 1.08002 * 119.98986 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.98919 * 180.30242 * 22 21 20 40 40 H 1.07993 * 120.00600 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00565 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 16 1.3386 -5.2330 0.0013 12 8 0.6642 -5.4200 -1.2355 13 8 0.6649 -5.4193 1.2385 14 7 2.5208 -6.3926 0.0005 15 6 3.4199 -6.5227 1.1498 16 6 4.1510 -7.8647 1.0760 17 1 4.7305 -7.9126 0.1540 18 8 3.1970 -8.9285 1.0948 19 6 5.0905 -8.0004 2.2759 20 6 5.8999 -9.2642 2.1399 21 6 7.1166 -9.2385 1.4838 22 6 7.8623 -10.3962 1.3636 23 6 7.3891 -11.5816 1.8943 24 6 6.1693 -11.6090 2.5462 25 17 5.5741 -13.0975 3.2124 26 6 5.4231 -10.4499 2.6658 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6243 -2.5567 0.8904 30 1 2.8722 -3.6041 0.8905 31 1 2.8721 -3.6043 -0.8894 32 1 2.6179 -6.9857 -0.7609 33 1 2.8405 -6.4748 2.0718 34 1 4.1476 -5.7113 1.1354 35 1 2.6447 -8.9476 1.8884 36 1 4.5040 -8.0415 3.1937 37 1 5.7609 -7.1416 2.3114 38 1 7.4870 -8.3125 1.0692 39 1 8.8149 -10.3744 0.8553 40 1 7.9715 -12.4861 1.8000 41 1 4.4707 -10.4707 3.1747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872581064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:11 Heat of formation + Delta-G solvation = -125.658391 kcal Electronic energy + Delta-G solvation = -25005.062963 eV Core-core repulsion = 21037.128308 eV Total energy + Delta-G solvation = -3967.934655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02784 -38.19905 -36.79638 -36.57951 -35.45864 -34.44337 -33.91876 -33.23603 -31.18842 -31.14534 -29.55765 -25.96107 -25.62670 -23.09351 -22.57488 -21.76849 -21.47638 -18.92702 -17.70120 -17.50087 -16.93304 -16.50401 -16.38994 -15.78956 -15.66932 -15.62019 -15.25977 -14.71539 -14.54435 -14.39573 -14.18176 -13.67640 -13.53512 -13.41180 -13.10418 -12.52751 -12.38434 -11.96835 -11.88482 -11.79098 -11.75095 -11.63330 -11.60550 -11.53364 -11.32933 -11.18004 -11.09310 -10.99307 -10.47151 -10.42784 -10.39122 -9.83349 -9.53891 -9.27074 -9.07944 -8.99668 -8.52572 -6.14712 -4.20644 0.72424 0.78546 0.87961 1.76606 3.07173 3.23412 3.24857 3.30026 3.31523 4.00102 4.15373 4.25706 4.35785 4.38405 4.52212 4.61640 4.67120 4.70346 4.76483 4.87176 4.95837 5.07982 5.20242 5.25125 5.34224 5.35475 5.51424 5.57786 5.63272 5.71558 5.81950 5.89350 5.92481 6.09801 6.39175 6.45167 7.06623 7.27373 7.33616 7.37613 7.77604 8.14750 8.82447 9.44126 10.96183 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.001949 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.575717 B =14361.012728 C =15212.890456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.595 3.405 12 O -0.966 6.966 13 O -0.968 6.968 14 N -1.121 6.121 15 C 0.082 3.918 16 C 0.108 3.892 17 H 0.107 0.893 18 O -0.551 6.551 19 C -0.117 4.117 20 C -0.061 4.061 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.117 4.117 24 C -0.033 4.033 25 Cl -0.073 7.073 26 C -0.095 4.095 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.415 0.585 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.377 0.623 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.613 -22.459 5.550 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.693 3.307 12 O -0.957 6.957 13 O -0.958 6.958 14 N -0.879 5.879 15 C -0.045 4.045 16 C 0.048 3.952 17 H 0.125 0.875 18 O -0.356 6.356 19 C -0.156 4.156 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.060 4.060 25 Cl -0.044 7.044 26 C -0.113 4.113 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.249 0.751 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.224 0.776 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.694 -22.700 5.204 28.083 hybrid contribution 0.921 1.017 0.275 1.399 sum 16.614 -21.683 5.479 27.860 Atomic orbital electron populations 1.69943 1.06105 1.27337 1.49379 1.25075 0.94987 0.99553 0.94905 0.86523 0.79484 0.82535 0.78668 1.20097 1.21074 1.20099 1.20956 0.92987 0.89796 1.52363 0.92126 1.18957 0.92700 0.90551 0.98915 1.30455 1.13735 1.18228 1.09951 1.05489 0.74642 0.76499 0.74113 1.93559 1.71561 1.85289 1.45258 1.93530 1.71446 1.85021 1.45809 1.55664 1.52843 1.52160 1.27252 1.21989 0.93999 0.98629 0.89910 1.22092 0.88801 0.85719 0.98618 0.87514 1.86622 1.51382 1.50789 1.46777 1.21377 0.98783 0.95635 0.99761 1.19638 0.94732 0.94510 0.97268 1.21197 0.94368 0.98849 0.98780 1.21101 1.00091 0.91987 0.99303 1.21056 0.94820 0.99203 0.98487 1.20931 0.96026 0.87789 1.01208 1.98379 1.88164 1.33555 1.84346 1.20919 0.99586 0.90603 1.00222 0.92448 0.94823 0.94825 0.86441 0.86109 0.75083 0.89805 0.90719 0.77577 0.89644 0.88912 0.85273 0.85091 0.85147 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.71 6.01 37.16 0.22 -10.49 16 11 S 2.60 44.09 5.46 -107.50 -0.59 43.50 16 12 O -0.97 -19.76 18.08 -57.54 -1.04 -20.80 16 13 O -0.97 -19.15 17.50 -57.54 -1.01 -20.15 16 14 N -1.12 -13.26 5.75 -10.61 -0.06 -13.32 16 15 C 0.08 0.74 5.80 -4.04 -0.02 0.71 16 16 C 0.11 0.80 3.04 -26.73 -0.08 0.72 16 17 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 18 O -0.55 -4.89 12.69 -35.23 -0.45 -5.34 16 19 C -0.12 -0.68 5.03 -27.89 -0.14 -0.82 16 20 C -0.06 -0.43 4.97 -104.63 -0.52 -0.95 16 21 C -0.11 -0.74 9.70 -39.58 -0.38 -1.13 16 22 C -0.11 -0.68 10.05 -39.59 -0.40 -1.08 16 23 C -0.12 -0.84 9.83 -39.55 -0.39 -1.23 16 24 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16 25 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.11 16 26 C -0.09 -0.74 9.17 -39.55 -0.36 -1.11 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16 31 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.42 4.47 8.62 -34.47 -0.30 4.17 16 33 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.38 2.44 9.05 45.56 0.41 2.85 16 36 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -36.20 380.70 -10.96 -47.15 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.89 Total: 3.20 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -2.87 Total: -28.29 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.68 Total: -38.78 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -2.49 Total: -46.30 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 44.09 SS G_CDS: -0.59 Total: 43.50 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.20 -10.96 -47.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872581064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.504 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds