Wall clock time and date at job start Wed Apr 1 2020 04:26:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86804 * 119.99964 * 2 1
4 4 H 1.48503 * 109.47197 * 239.99908 * 3 2 1
5 5 H 1.48504 * 109.47057 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47430 * 119.99633 * 3 2 1
7 7 C 1.37875 * 120.00425 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99984 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99917 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47231 * 179.97438 * 9 7 2
11 11 S 1.81402 * 109.47246 * 179.97438 * 10 9 7
12 12 O 1.42105 * 110.54058 * 68.37577 * 11 10 9
13 13 O 1.42094 * 110.54303 * 291.62858 * 11 10 9
14 14 N 1.65597 * 104.44819 * 179.97438 * 11 10 9
15 15 C 1.46500 * 120.00048 * 65.00623 * 14 11 10
16 16 C 1.52997 * 109.47195 * 164.99749 * 15 14 11
17 17 H 1.09003 * 109.47141 * 59.99727 * 16 15 14
18 18 O 1.42901 * 109.47043 * 299.99957 * 16 15 14
19 19 C 1.53001 * 109.47374 * 179.97438 * 16 15 14
20 20 C 1.50693 * 109.47605 * 184.99790 * 19 16 15
21 21 C 1.38263 * 119.99161 * 89.99509 * 20 19 16
22 22 C 1.38227 * 120.02488 * 179.72424 * 21 20 19
23 23 C 1.38234 * 120.01430 * 0.28273 * 22 21 20
24 24 C 1.38334 * 119.98337 * 359.97438 * 23 22 21
25 25 Cl 1.73599 * 120.00894 * 179.97438 * 24 23 22
26 26 C 1.38190 * 119.99673 * 270.27943 * 20 19 16
27 27 H 0.97002 * 120.00095 * 0.02562 * 1 2 3
28 28 H 1.08996 * 109.47471 * 59.99261 * 9 7 2
29 29 H 1.09001 * 109.46675 * 299.99330 * 9 7 2
30 30 H 1.09006 * 109.46987 * 59.99532 * 10 9 7
31 31 H 1.08997 * 109.47315 * 300.00014 * 10 9 7
32 32 H 0.97004 * 120.00001 * 245.00120 * 14 11 10
33 33 H 1.09003 * 109.47299 * 44.99573 * 15 14 11
34 34 H 1.08998 * 109.46750 * 284.99255 * 15 14 11
35 35 H 0.96708 * 114.00018 * 299.99654 * 18 16 15
36 36 H 1.08998 * 109.46818 * 64.99807 * 19 16 15
37 37 H 1.09001 * 109.47102 * 305.00256 * 19 16 15
38 38 H 1.08002 * 119.98986 * 0.02562 * 21 20 19
39 39 H 1.08002 * 119.98919 * 180.30242 * 22 21 20
40 40 H 1.07993 * 120.00600 * 179.97438 * 23 22 21
41 41 H 1.08002 * 120.00565 * 359.97438 * 26 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1029 1.6965 -1.2125
5 1 1.2841 2.7465 -0.0006
6 1 3.1028 1.6966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 16 1.3386 -5.2330 0.0013
12 8 0.6642 -5.4200 -1.2355
13 8 0.6649 -5.4193 1.2385
14 7 2.5208 -6.3926 0.0005
15 6 3.4199 -6.5227 1.1498
16 6 4.1510 -7.8647 1.0760
17 1 4.7305 -7.9126 0.1540
18 8 3.1970 -8.9285 1.0948
19 6 5.0905 -8.0004 2.2759
20 6 5.8999 -9.2642 2.1399
21 6 7.1166 -9.2385 1.4838
22 6 7.8623 -10.3962 1.3636
23 6 7.3891 -11.5816 1.8943
24 6 6.1693 -11.6090 2.5462
25 17 5.5741 -13.0975 3.2124
26 6 5.4231 -10.4499 2.6658
27 1 -0.4850 0.8401 -0.0004
28 1 0.6248 -2.5571 -0.8896
29 1 0.6243 -2.5567 0.8904
30 1 2.8722 -3.6041 0.8905
31 1 2.8721 -3.6043 -0.8894
32 1 2.6179 -6.9857 -0.7609
33 1 2.8405 -6.4748 2.0718
34 1 4.1476 -5.7113 1.1354
35 1 2.6447 -8.9476 1.8884
36 1 4.5040 -8.0415 3.1937
37 1 5.7609 -7.1416 2.3114
38 1 7.4870 -8.3125 1.0692
39 1 8.8149 -10.3744 0.8553
40 1 7.9715 -12.4861 1.8000
41 1 4.4707 -10.4707 3.1747
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000872581064.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:11
Heat of formation + Delta-G solvation = -125.658391 kcal
Electronic energy + Delta-G solvation = -25005.062963 eV
Core-core repulsion = 21037.128308 eV
Total energy + Delta-G solvation = -3967.934655 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.079 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.02784 -38.19905 -36.79638 -36.57951 -35.45864 -34.44337 -33.91876 -33.23603
-31.18842 -31.14534 -29.55765 -25.96107 -25.62670 -23.09351 -22.57488 -21.76849
-21.47638 -18.92702 -17.70120 -17.50087 -16.93304 -16.50401 -16.38994 -15.78956
-15.66932 -15.62019 -15.25977 -14.71539 -14.54435 -14.39573 -14.18176 -13.67640
-13.53512 -13.41180 -13.10418 -12.52751 -12.38434 -11.96835 -11.88482 -11.79098
-11.75095 -11.63330 -11.60550 -11.53364 -11.32933 -11.18004 -11.09310 -10.99307
-10.47151 -10.42784 -10.39122 -9.83349 -9.53891 -9.27074 -9.07944 -8.99668
-8.52572 -6.14712 -4.20644 0.72424 0.78546 0.87961 1.76606 3.07173
3.23412 3.24857 3.30026 3.31523 4.00102 4.15373 4.25706 4.35785
4.38405 4.52212 4.61640 4.67120 4.70346 4.76483 4.87176 4.95837
5.07982 5.20242 5.25125 5.34224 5.35475 5.51424 5.57786 5.63272
5.71558 5.81950 5.89350 5.92481 6.09801 6.39175 6.45167 7.06623
7.27373 7.33616 7.37613 7.77604 8.14750 8.82447 9.44126 10.96183
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.020350 B = 0.001949 C = 0.001840
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1375.575717 B =14361.012728 C =15212.890456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.058 3.942
3 Si 0.901 3.099
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.276 1.276
7 C -0.522 4.522
8 H 0.061 0.939
9 C 0.028 3.972
10 C -0.590 4.590
11 S 2.595 3.405
12 O -0.966 6.966
13 O -0.968 6.968
14 N -1.121 6.121
15 C 0.082 3.918
16 C 0.108 3.892
17 H 0.107 0.893
18 O -0.551 6.551
19 C -0.117 4.117
20 C -0.061 4.061
21 C -0.114 4.114
22 C -0.107 4.107
23 C -0.117 4.117
24 C -0.033 4.033
25 Cl -0.073 7.073
26 C -0.095 4.095
27 H 0.266 0.734
28 H 0.034 0.966
29 H 0.033 0.967
30 H 0.117 0.883
31 H 0.121 0.879
32 H 0.415 0.585
33 H 0.084 0.916
34 H 0.075 0.925
35 H 0.377 0.623
36 H 0.085 0.915
37 H 0.092 0.908
38 H 0.129 0.871
39 H 0.131 0.869
40 H 0.131 0.869
41 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.613 -22.459 5.550 28.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.145 4.145
3 Si 0.728 3.272
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.561 4.561
8 H 0.079 0.921
9 C -0.011 4.011
10 C -0.724 4.724
11 S 2.693 3.307
12 O -0.957 6.957
13 O -0.958 6.958
14 N -0.879 5.879
15 C -0.045 4.045
16 C 0.048 3.952
17 H 0.125 0.875
18 O -0.356 6.356
19 C -0.156 4.156
20 C -0.061 4.061
21 C -0.132 4.132
22 C -0.125 4.125
23 C -0.136 4.136
24 C -0.060 4.060
25 Cl -0.044 7.044
26 C -0.113 4.113
27 H 0.076 0.924
28 H 0.052 0.948
29 H 0.052 0.948
30 H 0.136 0.864
31 H 0.139 0.861
32 H 0.249 0.751
33 H 0.102 0.898
34 H 0.093 0.907
35 H 0.224 0.776
36 H 0.104 0.896
37 H 0.111 0.889
38 H 0.147 0.853
39 H 0.149 0.851
40 H 0.149 0.851
41 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 15.694 -22.700 5.204 28.083
hybrid contribution 0.921 1.017 0.275 1.399
sum 16.614 -21.683 5.479 27.860
Atomic orbital electron populations
1.69943 1.06105 1.27337 1.49379 1.25075 0.94987 0.99553 0.94905
0.86523 0.79484 0.82535 0.78668 1.20097 1.21074 1.20099 1.20956
0.92987 0.89796 1.52363 0.92126 1.18957 0.92700 0.90551 0.98915
1.30455 1.13735 1.18228 1.09951 1.05489 0.74642 0.76499 0.74113
1.93559 1.71561 1.85289 1.45258 1.93530 1.71446 1.85021 1.45809
1.55664 1.52843 1.52160 1.27252 1.21989 0.93999 0.98629 0.89910
1.22092 0.88801 0.85719 0.98618 0.87514 1.86622 1.51382 1.50789
1.46777 1.21377 0.98783 0.95635 0.99761 1.19638 0.94732 0.94510
0.97268 1.21197 0.94368 0.98849 0.98780 1.21101 1.00091 0.91987
0.99303 1.21056 0.94820 0.99203 0.98487 1.20931 0.96026 0.87789
1.01208 1.98379 1.88164 1.33555 1.84346 1.20919 0.99586 0.90603
1.00222 0.92448 0.94823 0.94825 0.86441 0.86109 0.75083 0.89805
0.90719 0.77577 0.89644 0.88912 0.85273 0.85091 0.85147 0.84969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16
2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16
3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16
4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16
6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
7 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16
8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16
9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16
10 C -0.59 -10.71 6.01 37.16 0.22 -10.49 16
11 S 2.60 44.09 5.46 -107.50 -0.59 43.50 16
12 O -0.97 -19.76 18.08 -57.54 -1.04 -20.80 16
13 O -0.97 -19.15 17.50 -57.54 -1.01 -20.15 16
14 N -1.12 -13.26 5.75 -10.61 -0.06 -13.32 16
15 C 0.08 0.74 5.80 -4.04 -0.02 0.71 16
16 C 0.11 0.80 3.04 -26.73 -0.08 0.72 16
17 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16
18 O -0.55 -4.89 12.69 -35.23 -0.45 -5.34 16
19 C -0.12 -0.68 5.03 -27.89 -0.14 -0.82 16
20 C -0.06 -0.43 4.97 -104.63 -0.52 -0.95 16
21 C -0.11 -0.74 9.70 -39.58 -0.38 -1.13 16
22 C -0.11 -0.68 10.05 -39.59 -0.40 -1.08 16
23 C -0.12 -0.84 9.83 -39.55 -0.39 -1.23 16
24 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16
25 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.11 16
26 C -0.09 -0.74 9.17 -39.55 -0.36 -1.11 16
27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16
29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16
30 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16
31 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16
32 H 0.42 4.47 8.62 -34.47 -0.30 4.17 16
33 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16
34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.38 2.44 9.05 45.56 0.41 2.85 16
36 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16
37 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16
38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16
39 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16
40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16
41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16
LS Contribution 380.70 15.07 5.74 5.74
Total: -1.00 -36.20 380.70 -10.96 -47.15
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -4.89 Total: 3.20 kcal
Atomic # 6 Polarization: -25.41 SS G_CDS: -2.87 Total: -28.29 kcal
Atomic # 7 Polarization: -39.45 SS G_CDS: 0.68 Total: -38.78 kcal
Atomic # 8 Polarization: -43.80 SS G_CDS: -2.49 Total: -46.30 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal
Atomic # 16 Polarization: 44.09 SS G_CDS: -0.59 Total: 43.50 kcal
Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.11 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -36.20 -10.96 -47.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000872581064.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.504 kcal
(2) G-P(sol) polarization free energy of solvation -36.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.700 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds