Wall clock time and date at job start Wed Apr 1 2020 04:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47197 * 239.99908 * 3 2 1 5 5 H 1.48504 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47430 * 119.99633 * 3 2 1 7 7 C 1.37875 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47231 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47246 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54058 * 68.37577 * 11 10 9 13 13 O 1.42094 * 110.54303 * 291.62858 * 11 10 9 14 14 N 1.65597 * 104.44819 * 179.97438 * 11 10 9 15 15 C 1.46500 * 120.00048 * 65.00623 * 14 11 10 16 16 C 1.52997 * 109.47195 * 164.99749 * 15 14 11 17 17 H 1.09003 * 109.47141 * 59.99727 * 16 15 14 18 18 O 1.42901 * 109.47043 * 299.99957 * 16 15 14 19 19 C 1.53001 * 109.47374 * 179.97438 * 16 15 14 20 20 C 1.50693 * 109.47605 * 184.99790 * 19 16 15 21 21 C 1.38263 * 119.99161 * 89.99509 * 20 19 16 22 22 C 1.38227 * 120.02488 * 179.72424 * 21 20 19 23 23 C 1.38234 * 120.01430 * 0.28273 * 22 21 20 24 24 C 1.38334 * 119.98337 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.00894 * 179.97438 * 24 23 22 26 26 C 1.38190 * 119.99673 * 270.27943 * 20 19 16 27 27 H 0.97002 * 120.00095 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47471 * 59.99261 * 9 7 2 29 29 H 1.09001 * 109.46675 * 299.99330 * 9 7 2 30 30 H 1.09006 * 109.46987 * 59.99532 * 10 9 7 31 31 H 1.08997 * 109.47315 * 300.00014 * 10 9 7 32 32 H 0.97004 * 120.00001 * 245.00120 * 14 11 10 33 33 H 1.09003 * 109.47299 * 44.99573 * 15 14 11 34 34 H 1.08998 * 109.46750 * 284.99255 * 15 14 11 35 35 H 0.96708 * 114.00018 * 299.99654 * 18 16 15 36 36 H 1.08998 * 109.46818 * 64.99807 * 19 16 15 37 37 H 1.09001 * 109.47102 * 305.00256 * 19 16 15 38 38 H 1.08002 * 119.98986 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.98919 * 180.30242 * 22 21 20 40 40 H 1.07993 * 120.00600 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00565 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 16 1.3386 -5.2330 0.0013 12 8 0.6642 -5.4200 -1.2355 13 8 0.6649 -5.4193 1.2385 14 7 2.5208 -6.3926 0.0005 15 6 3.4199 -6.5227 1.1498 16 6 4.1510 -7.8647 1.0760 17 1 4.7305 -7.9126 0.1540 18 8 3.1970 -8.9285 1.0948 19 6 5.0905 -8.0004 2.2759 20 6 5.8999 -9.2642 2.1399 21 6 7.1166 -9.2385 1.4838 22 6 7.8623 -10.3962 1.3636 23 6 7.3891 -11.5816 1.8943 24 6 6.1693 -11.6090 2.5462 25 17 5.5741 -13.0975 3.2124 26 6 5.4231 -10.4499 2.6658 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6243 -2.5567 0.8904 30 1 2.8722 -3.6041 0.8905 31 1 2.8721 -3.6043 -0.8894 32 1 2.6179 -6.9857 -0.7609 33 1 2.8405 -6.4748 2.0718 34 1 4.1476 -5.7113 1.1354 35 1 2.6447 -8.9476 1.8884 36 1 4.5040 -8.0415 3.1937 37 1 5.7609 -7.1416 2.3114 38 1 7.4870 -8.3125 1.0692 39 1 8.8149 -10.3744 0.8553 40 1 7.9715 -12.4861 1.8000 41 1 4.4707 -10.4707 3.1747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872581064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:11 Heat of formation + Delta-G solvation = -153.203544 kcal Electronic energy + Delta-G solvation = -25006.257411 eV Core-core repulsion = 21037.128308 eV Total energy + Delta-G solvation = -3969.129103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52998 -38.83440 -38.08244 -37.37422 -36.96490 -35.86655 -35.33104 -33.75582 -33.09429 -31.64136 -30.18548 -27.56261 -26.60233 -23.60230 -23.57061 -23.17080 -22.07340 -20.22005 -19.05390 -18.44837 -18.11445 -17.49761 -17.17562 -16.88487 -16.71595 -16.51226 -16.27672 -16.04787 -15.72682 -15.20184 -14.92875 -14.66424 -14.46312 -14.25082 -14.06592 -13.85965 -13.66999 -13.15669 -13.09344 -13.05652 -12.88326 -12.78559 -12.76614 -12.45177 -12.42982 -12.20038 -12.14450 -12.12932 -11.90777 -11.72376 -11.71121 -11.16810 -11.07000 -10.62134 -10.27825 -9.77692 -9.54729 -8.24064 -6.38055 -0.63083 0.23999 0.37095 1.20053 1.42378 1.45642 1.53725 1.91574 2.39532 2.70063 2.87402 3.09355 3.30115 3.51512 3.64462 3.91928 3.97891 3.99941 4.12498 4.17430 4.22447 4.25763 4.39521 4.42857 4.56910 4.64009 4.79967 4.84585 4.88725 4.96988 5.10177 5.20187 5.30498 5.31688 5.32289 5.44185 5.61336 5.70337 5.92993 6.08080 6.16224 6.75968 6.85646 7.32104 8.87811 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.001949 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.575717 B =14361.012728 C =15212.890456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.623 3.377 12 O -1.005 7.005 13 O -0.998 6.998 14 N -1.103 6.103 15 C 0.069 3.931 16 C 0.116 3.884 17 H 0.112 0.888 18 O -0.570 6.570 19 C -0.112 4.112 20 C -0.068 4.068 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.051 4.051 25 Cl -0.083 7.083 26 C -0.109 4.109 27 H 0.266 0.734 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.424 0.576 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.385 0.615 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.627 -22.109 5.642 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.096 0.904 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.720 3.280 12 O -0.995 6.995 13 O -0.988 6.988 14 N -0.865 5.865 15 C -0.057 4.057 16 C 0.055 3.945 17 H 0.129 0.871 18 O -0.377 6.377 19 C -0.150 4.150 20 C -0.068 4.068 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.146 4.146 24 C -0.077 4.077 25 Cl -0.054 7.054 26 C -0.127 4.127 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.260 0.740 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.720 -22.357 5.299 29.637 hybrid contribution 0.025 0.813 0.259 0.854 sum 18.745 -21.543 5.558 29.093 Atomic orbital electron populations 1.70102 1.08098 1.28315 1.50932 1.26140 0.95856 1.03953 0.94514 0.85363 0.78097 0.77298 0.79477 1.18839 1.21277 1.18588 1.21505 0.94051 0.90729 1.51367 0.90373 1.18825 0.93714 0.93235 0.96288 1.30333 1.12739 1.16317 1.12545 1.04352 0.74695 0.76453 0.72545 1.93500 1.73297 1.85878 1.46866 1.93491 1.72807 1.85493 1.46995 1.55138 1.52373 1.50374 1.28619 1.22392 0.94091 1.00772 0.88466 1.22090 0.88524 0.84241 0.99661 0.87057 1.86597 1.51996 1.51436 1.47635 1.21357 0.98680 0.95757 0.99188 1.19813 0.95199 0.94578 0.97206 1.21527 0.94063 0.99773 0.98218 1.21422 1.00922 0.91570 0.98867 1.21288 0.94657 1.00183 0.98458 1.21125 0.96789 0.87678 1.02135 1.98369 1.88333 1.34154 1.84567 1.21073 0.99854 0.91018 1.00791 0.92485 0.97823 0.97473 0.83526 0.83885 0.74001 0.89894 0.87944 0.76620 0.88952 0.86922 0.83156 0.82907 0.84236 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.54 -28.93 9.11 25.60 0.23 -28.70 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 9 C 0.02 0.93 4.98 29.85 0.15 1.07 16 10 C -0.59 -20.45 6.01 71.98 0.43 -20.02 16 11 S 2.62 87.44 5.46 -56.49 -0.31 87.13 16 12 O -1.01 -41.38 18.08 -127.65 -2.31 -43.69 16 13 O -1.00 -39.36 17.50 -127.65 -2.23 -41.59 16 14 N -1.10 -23.71 5.75 -187.49 -1.08 -24.79 16 15 C 0.07 1.03 5.80 86.38 0.50 1.53 16 16 C 0.12 1.38 3.04 30.59 0.09 1.47 16 17 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 18 O -0.57 -9.15 12.69 -148.98 -1.89 -11.04 16 19 C -0.11 -0.95 5.03 29.85 0.15 -0.80 16 20 C -0.07 -0.81 4.97 -19.87 -0.10 -0.91 16 21 C -0.12 -1.21 9.70 22.27 0.22 -1.00 16 22 C -0.11 -1.15 10.05 22.27 0.22 -0.93 16 23 C -0.13 -1.68 9.83 22.29 0.22 -1.46 16 24 C -0.05 -0.80 6.32 22.32 0.14 -0.66 16 25 Cl -0.08 -1.36 28.96 -2.72 -0.08 -1.44 16 26 C -0.11 -1.60 9.17 22.29 0.20 -1.39 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.15 4.19 8.14 -2.39 -0.02 4.17 16 31 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 32 H 0.42 8.20 8.62 -96.74 -0.83 7.36 16 33 H 0.08 1.31 7.70 -2.39 -0.02 1.29 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.38 4.50 9.05 -74.05 -0.67 3.83 16 36 H 0.09 0.68 8.09 -2.39 -0.02 0.66 16 37 H 0.11 0.54 8.09 -2.39 -0.02 0.52 16 38 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -79.72 380.70 -3.10 -82.82 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.44 Total: 15.95 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 2.93 Total: -51.68 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -0.79 Total: -80.84 kcal Atomic # 8 Polarization: -89.89 SS G_CDS: -6.43 Total: -96.32 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 87.44 SS G_CDS: -0.31 Total: 87.13 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -79.72 -3.10 -82.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872581064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.379 kcal (2) G-P(sol) polarization free energy of solvation -79.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds