Wall clock time and date at job start Wed Apr 1 2020 04:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00352 * 2 1 4 4 H 1.48501 * 109.47078 * 270.00326 * 3 2 1 5 5 H 1.48501 * 109.46973 * 29.99502 * 3 2 1 6 6 H 1.48492 * 109.47329 * 149.99898 * 3 2 1 7 7 C 1.37879 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47146 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47137 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54317 * 68.37683 * 11 10 9 13 13 O 1.42098 * 110.54623 * 291.62271 * 11 10 9 14 14 N 1.65597 * 104.44795 * 179.97438 * 11 10 9 15 15 C 1.46501 * 119.99999 * 65.00566 * 14 11 10 16 16 C 1.53003 * 109.47269 * 164.99897 * 15 14 11 17 17 H 1.08996 * 109.47005 * 304.99505 * 16 15 14 18 18 O 1.42902 * 109.47104 * 64.99932 * 16 15 14 19 19 C 1.52998 * 109.46840 * 184.99901 * 16 15 14 20 20 C 1.50706 * 109.47155 * 174.99834 * 19 16 15 21 21 C 1.38264 * 119.99067 * 89.99492 * 20 19 16 22 22 C 1.38224 * 120.02445 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.01313 * 0.26351 * 22 21 20 24 24 C 1.38328 * 119.98312 * 359.46435 * 23 22 21 25 25 Cl 1.73603 * 120.01189 * 180.30168 * 24 23 22 26 26 C 1.38190 * 119.99238 * 269.98078 * 20 19 16 27 27 H 0.97002 * 119.99625 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47446 * 59.99573 * 9 7 2 29 29 H 1.09000 * 109.46818 * 299.99501 * 9 7 2 30 30 H 1.09004 * 109.46781 * 59.99945 * 10 9 7 31 31 H 1.08998 * 109.46637 * 300.00238 * 10 9 7 32 32 H 0.97001 * 120.00397 * 245.00177 * 14 11 10 33 33 H 1.09006 * 109.47347 * 44.99754 * 15 14 11 34 34 H 1.09003 * 109.46928 * 285.00121 * 15 14 11 35 35 H 0.96697 * 113.99801 * 59.99806 * 18 16 15 36 36 H 1.08995 * 109.47349 * 55.00142 * 19 16 15 37 37 H 1.08997 * 109.47239 * 294.99702 * 19 16 15 38 38 H 1.07997 * 119.98741 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.99032 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.00242 * 179.74655 * 23 22 21 41 41 H 1.08001 * 120.00879 * 359.97264 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 16 1.3381 -5.2331 0.0013 12 8 0.6637 -5.4201 -1.2355 13 8 0.6645 -5.4194 1.2385 14 7 2.5202 -6.3927 0.0005 15 6 3.4194 -6.5229 1.1498 16 6 4.1503 -7.8650 1.0760 17 1 3.4215 -8.6720 1.0009 18 8 5.0002 -7.8821 -0.0727 19 6 4.9944 -8.0560 2.3378 20 6 5.6168 -9.4284 2.3228 21 6 6.8577 -9.6182 1.7432 22 6 7.4291 -10.8768 1.7286 23 6 6.7577 -11.9475 2.2887 24 6 5.5187 -11.7571 2.8736 25 17 4.6783 -13.0998 3.5841 26 6 4.9474 -10.4968 2.8885 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.8718 -3.6044 0.8906 31 1 2.8718 -3.6044 -0.8894 32 1 2.6173 -6.9859 -0.7608 33 1 2.8399 -6.4750 2.0718 34 1 4.1471 -5.7115 1.1355 35 1 5.6748 -7.1893 -0.0731 36 1 4.3599 -7.9545 3.2182 37 1 5.7800 -7.3011 2.3671 38 1 7.3804 -8.7830 1.3010 39 1 8.3982 -11.0244 1.2754 40 1 7.2024 -12.9315 2.2735 41 1 3.9785 -10.3483 3.3418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872581065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:13 Heat of formation + Delta-G solvation = -153.714863 kcal Electronic energy + Delta-G solvation = -24988.736407 eV Core-core repulsion = 21019.585131 eV Total energy + Delta-G solvation = -3969.151275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53881 -38.84782 -38.10040 -37.38425 -36.98070 -35.86913 -35.33531 -33.77681 -33.09781 -31.61925 -30.20263 -27.56746 -26.61314 -23.63709 -23.57557 -23.14429 -22.08743 -20.23017 -19.06047 -18.45746 -18.12279 -17.51428 -17.24731 -16.88613 -16.70655 -16.51052 -16.23687 -16.11258 -15.67661 -15.19665 -14.91902 -14.65925 -14.48069 -14.23308 -14.12411 -13.88398 -13.67871 -13.17938 -13.11485 -13.01875 -12.91531 -12.82623 -12.75130 -12.44230 -12.42373 -12.21929 -12.14964 -12.11064 -11.92823 -11.73530 -11.70940 -11.17880 -11.02661 -10.63210 -10.32869 -9.79135 -9.55067 -8.24386 -6.38200 -0.63939 0.25199 0.34006 1.18354 1.42459 1.44110 1.55066 1.89891 2.39354 2.69721 2.85928 3.09276 3.29941 3.48989 3.65362 3.90487 3.95098 4.00687 4.12178 4.13917 4.20143 4.27315 4.39140 4.42027 4.56615 4.62786 4.77811 4.80066 4.94052 4.95913 5.08392 5.19136 5.30219 5.30696 5.31630 5.44345 5.61626 5.70363 5.92684 6.07852 6.15476 6.76075 6.95337 7.31983 8.87781 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.001946 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.003468 B =14382.165561 C =15029.447818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.018 3.982 10 C -0.585 4.585 11 S 2.621 3.379 12 O -1.005 7.005 13 O -0.999 6.999 14 N -1.105 6.105 15 C 0.070 3.930 16 C 0.119 3.881 17 H 0.093 0.907 18 O -0.564 6.564 19 C -0.112 4.112 20 C -0.067 4.067 21 C -0.102 4.102 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.050 4.050 25 Cl -0.083 7.083 26 C -0.126 4.126 27 H 0.266 0.734 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.424 0.576 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.391 0.609 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.759 -22.290 5.709 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.575 4.575 8 H 0.097 0.903 9 C -0.021 4.021 10 C -0.717 4.717 11 S 2.718 3.282 12 O -0.995 6.995 13 O -0.989 6.989 14 N -0.867 5.867 15 C -0.057 4.057 16 C 0.058 3.942 17 H 0.111 0.889 18 O -0.371 6.371 19 C -0.150 4.150 20 C -0.068 4.068 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.145 4.145 24 C -0.077 4.077 25 Cl -0.054 7.054 26 C -0.144 4.144 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.261 0.739 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.241 0.759 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.196 -22.898 5.786 29.814 hybrid contribution 0.409 1.122 -0.061 1.196 sum 18.605 -21.776 5.725 29.208 Atomic orbital electron populations 1.70111 1.08114 1.28245 1.51016 1.26147 0.95860 1.03980 0.94537 0.85302 0.78702 0.77646 0.78527 1.19795 1.21099 1.17878 1.21531 0.94059 0.90689 1.51222 0.90338 1.18835 0.93726 0.93255 0.96295 1.30311 1.12694 1.16158 1.12556 1.04408 0.74727 0.76558 0.72540 1.93501 1.73308 1.85876 1.46801 1.93496 1.72829 1.85519 1.47019 1.55192 1.52120 1.50701 1.28712 1.22390 0.94128 1.00568 0.88572 1.21914 0.91274 0.95490 0.85540 0.88864 1.86620 1.48973 1.58466 1.43065 1.21355 1.00965 0.93781 0.98859 1.19817 0.94852 0.95037 0.97073 1.21456 0.94732 0.98311 0.97539 1.21447 1.00846 0.92021 0.98485 1.21288 0.93376 1.01092 0.98732 1.21093 0.95362 0.89087 1.02110 1.98370 1.78106 1.46193 1.82767 1.21146 1.00914 0.91049 1.01313 0.92497 0.97824 0.97471 0.83512 0.83844 0.73915 0.89481 0.88238 0.75923 0.88556 0.87188 0.83199 0.82901 0.84184 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 13.29 21.45 0.28 -56.08 16 2 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 3 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.54 -28.81 9.11 25.60 0.23 -28.58 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 0.90 4.98 29.85 0.15 1.05 16 10 C -0.58 -20.36 6.01 71.98 0.43 -19.93 16 11 S 2.62 87.95 5.46 -56.49 -0.31 87.65 16 12 O -1.00 -41.46 18.08 -127.65 -2.31 -43.77 16 13 O -1.00 -39.81 17.50 -127.65 -2.23 -42.05 16 14 N -1.11 -24.15 5.85 -187.47 -1.10 -25.25 16 15 C 0.07 1.06 5.77 86.38 0.50 1.56 16 16 C 0.12 1.46 3.05 30.59 0.09 1.56 16 17 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 18 O -0.56 -6.74 12.64 -148.98 -1.88 -8.63 16 19 C -0.11 -0.98 5.03 29.85 0.15 -0.83 16 20 C -0.07 -0.83 4.97 -19.87 -0.10 -0.92 16 21 C -0.10 -1.06 9.40 22.27 0.21 -0.85 16 22 C -0.11 -1.17 10.05 22.27 0.22 -0.94 16 23 C -0.13 -1.68 9.83 22.29 0.22 -1.46 16 24 C -0.05 -0.81 6.32 22.32 0.14 -0.66 16 25 Cl -0.08 -1.39 28.96 -2.72 -0.08 -1.47 16 26 C -0.13 -1.91 9.49 22.29 0.21 -1.70 16 27 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.15 4.19 8.14 -2.39 -0.02 4.17 16 31 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 32 H 0.42 8.47 8.47 -96.74 -0.82 7.65 16 33 H 0.09 1.43 7.70 -2.38 -0.02 1.41 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.39 1.74 9.04 -74.06 -0.67 1.07 16 36 H 0.10 0.79 8.08 -2.39 -0.02 0.77 16 37 H 0.11 0.46 8.09 -2.39 -0.02 0.44 16 38 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 40 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -79.91 380.59 -3.10 -83.01 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -0.43 Total: 13.85 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 2.92 Total: -51.65 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -0.81 Total: -81.33 kcal Atomic # 8 Polarization: -88.02 SS G_CDS: -6.42 Total: -94.44 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 87.95 SS G_CDS: -0.31 Total: 87.65 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -79.91 -3.10 -83.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872581065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.701 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds