Wall clock time and date at job start Wed Apr 1 2020 04:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48500 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47126 * 300.00410 * 3 2 1 6 6 H 1.48505 * 109.46781 * 60.00233 * 3 2 1 7 7 C 1.38949 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99405 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00652 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00465 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99886 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00039 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.34234 * 116.99947 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 12 17 17 H 1.09000 * 109.47422 * 305.00588 * 16 14 13 18 18 O 1.42900 * 109.47074 * 185.00012 * 16 14 13 19 19 C 1.50699 * 109.46702 * 64.99934 * 16 14 13 20 20 C 1.38241 * 119.99793 * 84.73270 * 19 16 14 21 21 C 1.38236 * 119.99907 * 179.76384 * 20 19 16 22 22 C 1.38233 * 119.99837 * 0.50144 * 21 20 19 23 23 C 1.50707 * 120.00091 * 179.72451 * 22 21 20 24 24 F 1.39901 * 109.47277 * 270.02381 * 23 22 21 25 25 F 1.39904 * 109.46947 * 30.02301 * 23 22 21 26 26 F 1.39897 * 109.47370 * 150.02337 * 23 22 21 27 27 C 1.38235 * 120.00289 * 359.74818 * 22 21 20 28 28 C 1.38228 * 119.99930 * 359.97438 * 27 22 21 29 29 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99639 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47315 * 59.99933 * 12 10 9 32 32 H 1.09002 * 109.47266 * 299.99133 * 12 10 9 33 33 H 0.96703 * 113.99995 * 299.99860 * 18 16 14 34 34 H 1.08000 * 120.00250 * 359.97438 * 20 19 16 35 35 H 1.08003 * 119.99919 * 180.22531 * 21 20 19 36 36 H 1.07999 * 120.00195 * 179.97438 * 27 22 21 37 37 H 1.07997 * 120.00492 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 8 2.1872 -5.9666 -0.0027 14 6 1.6741 -7.2070 -0.0027 15 8 0.4763 -7.3653 -0.0028 16 6 2.5921 -8.4021 -0.0095 17 1 3.2769 -8.3295 -0.8544 18 8 1.8173 -9.5972 -0.1256 19 6 3.3804 -8.4372 1.2743 20 6 2.8369 -9.0209 2.4034 21 6 3.5620 -9.0575 3.5798 22 6 4.8264 -8.5011 3.6299 23 6 5.6144 -8.5354 4.9141 24 9 5.3343 -7.3881 5.6640 25 9 5.2588 -9.6714 5.6492 26 9 6.9817 -8.5788 4.6212 27 6 5.3679 -7.9128 2.5023 28 6 4.6452 -7.8814 1.3244 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6174 -4.9205 -0.8924 32 1 0.6168 -4.9209 0.8876 33 1 1.1848 -9.7274 0.5942 34 1 1.8471 -9.4515 2.3656 35 1 3.1387 -9.5168 4.4609 36 1 6.3556 -7.4778 2.5415 37 1 5.0680 -7.4214 0.4435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873481781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:20 Heat of formation + Delta-G solvation = -292.207958 kcal Electronic energy + Delta-G solvation = -29666.510419 eV Core-core repulsion = 24573.343776 eV Total energy + Delta-G solvation = -5093.166643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.41514 -47.94474 -47.85853 -41.01390 -39.71239 -38.30559 -37.25177 -36.04681 -34.06288 -32.88184 -31.51410 -31.43855 -29.35362 -27.88860 -25.52018 -24.55941 -23.37022 -22.26564 -21.11093 -19.67653 -18.92917 -18.72348 -18.67231 -18.33338 -18.15607 -17.73582 -16.93069 -16.27510 -15.85221 -15.73965 -15.28848 -14.77276 -14.75348 -14.67093 -14.41520 -14.33838 -14.18676 -14.11342 -14.03522 -14.01182 -13.90613 -13.68162 -13.37747 -13.13173 -12.59279 -12.33710 -12.12415 -12.00890 -11.66904 -11.64535 -11.38932 -11.19207 -10.56945 -10.49016 -10.42804 -10.33821 -9.66603 -9.47806 -9.42768 -8.59258 -8.13621 -6.54878 -3.97071 0.40756 0.88591 1.98360 2.36858 2.41069 3.04435 3.08302 3.21126 3.28238 3.41173 3.67050 3.72452 3.84386 3.99554 4.07976 4.15540 4.33538 4.42985 4.47669 4.74372 4.90230 4.94425 5.09404 5.10346 5.20251 5.40913 5.50386 5.59419 5.68329 5.78476 5.94168 5.96746 6.30027 6.40827 6.92282 7.43431 7.58816 7.88910 8.42360 9.02043 9.33528 9.82743 10.62291 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.002720 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.027039 B =10292.287956 C =12223.530569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.059 3.941 13 O -0.318 6.318 14 C 0.433 3.567 15 O -0.501 6.501 16 C 0.164 3.836 17 H 0.153 0.847 18 O -0.521 6.521 19 C -0.091 4.091 20 C -0.109 4.109 21 C -0.069 4.069 22 C -0.177 4.177 23 C 0.509 3.491 24 F -0.174 7.174 25 F -0.178 7.178 26 F -0.176 7.176 27 C -0.065 4.065 28 C -0.084 4.084 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.385 0.615 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 -19.969 6.038 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.459 6.459 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.274 3.726 15 O -0.389 6.389 16 C 0.103 3.897 17 H 0.171 0.829 18 O -0.328 6.328 19 C -0.092 4.092 20 C -0.126 4.126 21 C -0.087 4.087 22 C -0.178 4.178 23 C 0.455 3.545 24 F -0.155 7.155 25 F -0.160 7.160 26 F -0.158 7.158 27 C -0.083 4.083 28 C -0.102 4.102 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.235 0.765 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.610 -19.883 5.541 21.673 hybrid contribution -0.735 1.057 0.778 1.504 sum 5.874 -18.827 6.319 20.709 Atomic orbital electron populations 1.69624 1.06026 1.28457 1.49555 1.25324 0.95693 0.99917 0.96799 0.85741 0.79725 0.80693 0.77851 1.19048 1.20585 1.20574 1.19777 0.93516 0.81693 1.48187 0.87513 1.41709 1.09385 1.04105 1.63646 1.19256 0.88337 0.83982 0.86203 1.90561 1.13309 1.86729 1.55334 1.22820 0.90855 0.84539 1.03585 1.86544 1.40410 1.13928 1.82304 1.24442 0.89146 0.85821 0.73187 1.90688 1.16366 1.86622 1.45241 1.20303 0.90175 0.81443 0.97810 0.82944 1.86710 1.55423 1.37744 1.52882 1.20335 0.95491 0.98464 0.94890 1.20859 1.00224 0.99785 0.91775 1.20844 0.92296 0.96804 0.98747 1.20055 0.97252 1.07231 0.93312 1.18286 0.77778 0.73822 0.84650 1.93257 1.93375 1.50441 1.78408 1.93188 1.91668 1.51691 1.79404 1.93196 1.33115 1.96119 1.93331 1.20992 1.00462 0.95639 0.91196 1.21072 0.93144 0.97153 0.98829 0.91624 0.77171 0.89370 0.89513 0.76450 0.84727 0.84289 0.83979 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 13.05 55.50 0.72 -22.95 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.19 9.68 -14.94 -0.14 -8.33 16 8 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.55 -13.59 5.29 -10.96 -0.06 -13.65 16 10 C 0.44 10.17 7.86 -10.99 -0.09 10.08 16 11 O -0.58 -15.34 16.08 -14.11 -0.23 -15.56 16 12 C 0.06 1.08 5.94 36.00 0.21 1.29 16 13 O -0.32 -5.40 9.74 -45.92 -0.45 -5.85 16 14 C 0.43 6.10 7.26 36.01 0.26 6.36 16 15 O -0.50 -7.93 16.07 -25.46 -0.41 -8.34 16 16 C 0.16 1.67 3.73 -29.03 -0.11 1.57 16 17 H 0.15 1.28 8.05 -51.93 -0.42 0.86 16 18 O -0.52 -5.02 12.79 -55.14 -0.71 -5.72 16 19 C -0.09 -0.90 4.98 -104.62 -0.52 -1.42 16 20 C -0.11 -0.94 9.33 -39.58 -0.37 -1.31 16 21 C -0.07 -0.61 9.40 -39.58 -0.37 -0.98 16 22 C -0.18 -1.76 5.45 -104.62 -0.57 -2.33 16 23 C 0.51 5.14 3.36 36.01 0.12 5.26 16 24 F -0.17 -1.99 17.30 2.25 0.04 -1.96 16 25 F -0.18 -1.74 16.46 2.25 0.04 -1.70 16 26 F -0.18 -1.80 16.46 2.25 0.04 -1.76 16 27 C -0.06 -0.64 9.40 -39.59 -0.37 -1.01 16 28 C -0.08 -0.83 9.68 -39.58 -0.38 -1.22 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 31 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 32 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 33 H 0.39 2.71 7.15 45.56 0.33 3.03 16 34 H 0.13 0.84 6.62 -52.49 -0.35 0.49 16 35 H 0.14 0.96 7.61 -52.48 -0.40 0.56 16 36 H 0.14 1.20 7.60 -52.49 -0.40 0.80 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.80 350.43 -5.52 -38.31 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -2.34 Total: 10.04 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -2.43 Total: 8.51 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.67 Total: -36.61 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.79 Total: -35.48 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.41 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.80 -5.52 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873481781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -253.894 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds