Wall clock time and date at job start Wed Apr 1 2020 04:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48500 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47126 * 300.00410 * 3 2 1 6 6 H 1.48505 * 109.46781 * 60.00233 * 3 2 1 7 7 C 1.38949 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99405 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00652 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00465 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99886 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00039 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.46937 * 179.97438 * 12 10 9 14 14 C 1.34234 * 116.99947 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99997 * 179.72219 * 14 13 12 17 17 H 1.09000 * 109.47422 * 305.00588 * 16 14 13 18 18 O 1.42900 * 109.47074 * 185.00012 * 16 14 13 19 19 C 1.50699 * 109.46702 * 64.99934 * 16 14 13 20 20 C 1.38241 * 119.99793 * 84.73270 * 19 16 14 21 21 C 1.38236 * 119.99907 * 179.76384 * 20 19 16 22 22 C 1.38233 * 119.99837 * 0.50144 * 21 20 19 23 23 C 1.50707 * 120.00091 * 179.72451 * 22 21 20 24 24 F 1.39901 * 109.47277 * 270.02381 * 23 22 21 25 25 F 1.39904 * 109.46947 * 30.02301 * 23 22 21 26 26 F 1.39897 * 109.47370 * 150.02337 * 23 22 21 27 27 C 1.38235 * 120.00289 * 359.74818 * 22 21 20 28 28 C 1.38228 * 119.99930 * 359.97438 * 27 22 21 29 29 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99639 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47315 * 59.99933 * 12 10 9 32 32 H 1.09002 * 109.47266 * 299.99133 * 12 10 9 33 33 H 0.96703 * 113.99995 * 299.99860 * 18 16 14 34 34 H 1.08000 * 120.00250 * 359.97438 * 20 19 16 35 35 H 1.08003 * 119.99919 * 180.22531 * 21 20 19 36 36 H 1.07999 * 120.00195 * 179.97438 * 27 22 21 37 37 H 1.07997 * 120.00492 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 8 2.1872 -5.9666 -0.0027 14 6 1.6741 -7.2070 -0.0027 15 8 0.4763 -7.3653 -0.0028 16 6 2.5921 -8.4021 -0.0095 17 1 3.2769 -8.3295 -0.8544 18 8 1.8173 -9.5972 -0.1256 19 6 3.3804 -8.4372 1.2743 20 6 2.8369 -9.0209 2.4034 21 6 3.5620 -9.0575 3.5798 22 6 4.8264 -8.5011 3.6299 23 6 5.6144 -8.5354 4.9141 24 9 5.3343 -7.3881 5.6640 25 9 5.2588 -9.6714 5.6492 26 9 6.9817 -8.5788 4.6212 27 6 5.3679 -7.9128 2.5023 28 6 4.6452 -7.8814 1.3244 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 -0.0016 31 1 0.6174 -4.9205 -0.8924 32 1 0.6168 -4.9209 0.8876 33 1 1.1848 -9.7274 0.5942 34 1 1.8471 -9.4515 2.3656 35 1 3.1387 -9.5168 4.4609 36 1 6.3556 -7.4778 2.5415 37 1 5.0680 -7.4214 0.4435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873481781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:19 Heat of formation + Delta-G solvation = -312.946957 kcal Electronic energy + Delta-G solvation = -29667.409729 eV Core-core repulsion = 24573.343776 eV Total energy + Delta-G solvation = -5094.065953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.22829 -48.73860 -48.70191 -42.07661 -40.65115 -39.99498 -38.28268 -37.19824 -36.03593 -33.64838 -33.40999 -32.20524 -30.59346 -29.07525 -26.75023 -26.05816 -24.07768 -23.19001 -22.07903 -21.45051 -20.08989 -19.68558 -19.54550 -19.51734 -19.34455 -18.70932 -18.12097 -17.60272 -17.36623 -16.72742 -16.53826 -16.00317 -15.82899 -15.74736 -15.55472 -15.47389 -15.15572 -15.07290 -15.00509 -14.87087 -14.85134 -14.66657 -14.39370 -14.11523 -13.94461 -13.71250 -13.57425 -13.22853 -12.95057 -12.81952 -12.47121 -12.39150 -12.22909 -12.11295 -11.92752 -11.58618 -11.43718 -10.51927 -10.23420 -10.14099 -10.12025 -8.53187 -6.03493 -0.34380 0.18821 0.89070 1.23256 1.34228 1.43926 1.57913 1.58433 1.86360 2.25469 2.32064 2.63249 2.95370 2.96609 3.12124 3.12701 3.26083 3.35560 3.56425 3.65963 3.79195 4.00638 4.06092 4.12841 4.20428 4.20998 4.39949 4.51898 4.84034 4.97878 5.07069 5.17538 5.22807 5.36972 5.61161 5.88227 6.24546 6.43995 6.53276 7.02622 7.39471 7.92479 8.64020 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.002720 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.027039 B =10292.287956 C =12223.530569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.437 3.563 11 O -0.614 6.614 12 C 0.070 3.930 13 O -0.333 6.333 14 C 0.435 3.565 15 O -0.518 6.518 16 C 0.177 3.823 17 H 0.172 0.828 18 O -0.523 6.523 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.072 4.072 22 C -0.187 4.187 23 C 0.511 3.489 24 F -0.184 7.184 25 F -0.175 7.175 26 F -0.178 7.178 27 C -0.077 4.077 28 C -0.095 4.095 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.397 0.603 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -20.679 6.115 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.500 6.500 12 C -0.007 4.007 13 O -0.248 6.248 14 C 0.277 3.723 15 O -0.407 6.407 16 C 0.116 3.884 17 H 0.189 0.811 18 O -0.331 6.331 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.188 4.188 23 C 0.457 3.543 24 F -0.165 7.165 25 F -0.157 7.157 26 F -0.159 7.159 27 C -0.095 4.095 28 C -0.112 4.112 29 H 0.090 0.910 30 H 0.234 0.766 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.071 -20.620 5.624 22.219 hybrid contribution -0.591 1.177 0.779 1.530 sum 5.480 -19.443 6.403 21.191 Atomic orbital electron populations 1.69678 1.06943 1.29633 1.49324 1.26105 0.96556 1.02555 0.95714 0.84821 0.78148 0.76695 0.78395 1.19483 1.19501 1.19557 1.19752 0.92946 0.83352 1.50476 0.89690 1.41750 1.09551 1.04238 1.64104 1.20068 0.88124 0.85300 0.84118 1.90529 1.15260 1.87645 1.56575 1.22550 0.90230 0.82628 1.05334 1.86554 1.40612 1.14751 1.82908 1.25259 0.89583 0.85437 0.71990 1.90678 1.17341 1.86616 1.46077 1.20352 0.89524 0.79725 0.98818 0.81130 1.86713 1.55744 1.36889 1.53704 1.20381 0.95494 0.99078 0.95109 1.21188 1.01203 0.99074 0.91158 1.21123 0.91838 0.96392 0.99599 1.20169 0.97853 1.07733 0.93066 1.18315 0.77747 0.73540 0.84705 1.93236 1.93449 1.51094 1.78724 1.93189 1.91632 1.51450 1.79393 1.93189 1.33314 1.96107 1.93332 1.21151 1.01018 0.95977 0.91341 1.21245 0.93502 0.97318 0.99172 0.91002 0.76631 0.87476 0.87711 0.75103 0.82183 0.82412 0.83312 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.93 13.05 21.66 0.28 -47.65 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.88 5.29 -306.99 -1.62 -29.51 16 10 C 0.44 20.46 7.86 87.66 0.69 21.15 16 11 O -0.61 -33.32 16.08 15.73 0.25 -33.07 16 12 C 0.07 2.46 5.94 71.23 0.42 2.88 16 13 O -0.33 -10.97 9.74 -45.10 -0.44 -11.41 16 14 C 0.43 11.47 7.26 71.24 0.52 11.99 16 15 O -0.52 -15.38 16.07 28.40 0.46 -14.93 16 16 C 0.18 3.25 3.73 29.10 0.11 3.35 16 17 H 0.17 2.49 8.05 -2.39 -0.02 2.47 16 18 O -0.52 -8.70 12.79 -129.94 -1.66 -10.37 16 19 C -0.10 -1.79 4.98 -19.86 -0.10 -1.89 16 20 C -0.11 -1.65 9.33 22.27 0.21 -1.44 16 21 C -0.07 -1.14 9.40 22.27 0.21 -0.93 16 22 C -0.19 -3.53 5.45 -19.86 -0.11 -3.64 16 23 C 0.51 9.97 3.36 71.24 0.24 10.21 16 24 F -0.18 -4.15 17.30 44.97 0.78 -3.38 16 25 F -0.18 -3.23 16.46 44.97 0.74 -2.49 16 26 F -0.18 -3.55 16.46 44.97 0.74 -2.81 16 27 C -0.08 -1.47 9.40 22.27 0.21 -1.26 16 28 C -0.09 -1.79 9.68 22.27 0.22 -1.57 16 29 H 0.28 13.67 8.31 -92.70 -0.77 12.90 16 30 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 31 H 0.11 3.38 8.13 -2.39 -0.02 3.36 16 32 H 0.10 3.32 8.13 -2.39 -0.02 3.30 16 33 H 0.40 4.45 7.15 -74.06 -0.53 3.92 16 34 H 0.16 1.49 6.62 -2.91 -0.02 1.48 16 35 H 0.16 1.83 7.61 -2.91 -0.02 1.80 16 36 H 0.15 2.50 7.60 -2.91 -0.02 2.47 16 37 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -69.78 350.43 5.37 -64.41 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.08 Total: 26.53 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 3.89 Total: 21.20 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.34 Total: -77.15 kcal Atomic # 8 Polarization: -68.38 SS G_CDS: -1.39 Total: -69.77 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 2.26 Total: -8.67 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -69.78 5.37 -64.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873481781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -248.536 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -318.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -312.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds