Wall clock time and date at job start Wed Apr 1 2020 04:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99616 * 2 1 4 4 O 1.20821 * 120.00531 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99985 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47109 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46826 * 179.97438 * 6 5 3 8 8 C 1.36943 * 119.99970 * 269.99573 * 7 6 5 9 9 H 1.07999 * 119.99744 * 141.80983 * 8 7 6 10 10 C 1.38810 * 120.00064 * 321.81456 * 8 7 6 11 11 N 1.31625 * 120.00304 * 158.79072 * 10 8 7 12 12 Si 1.86807 * 119.99993 * 338.78980 * 10 8 7 13 13 H 1.48502 * 109.46953 * 95.35131 * 12 10 8 14 14 H 1.48496 * 109.47216 * 215.34897 * 12 10 8 15 15 H 1.48493 * 109.46835 * 335.34940 * 12 10 8 16 16 C 1.46496 * 120.00243 * 90.00254 * 7 6 5 17 17 C 1.50698 * 109.46897 * 268.30980 * 16 7 6 18 18 C 1.33388 * 125.20725 * 95.59804 * 17 16 7 19 19 C 1.38423 * 114.92563 * 179.79310 * 18 17 16 20 20 C 1.33391 * 114.91825 * 0.43012 * 19 18 17 21 21 S 1.76201 * 125.20315 * 179.86416 * 20 19 18 22 22 C 1.81389 * 104.45300 * 89.71853 * 21 20 19 23 23 O 1.42104 * 104.27571 * 333.64280 * 21 20 19 24 24 O 1.42103 * 104.27731 * 205.79034 * 21 20 19 25 25 S 1.75884 * 109.59435 * 359.59345 * 20 19 18 26 26 H 1.09004 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46952 * 299.99674 * 1 2 3 28 28 H 1.08995 * 109.47335 * 60.00045 * 1 2 3 29 29 H 1.09001 * 109.46824 * 59.99835 * 5 3 2 30 30 H 1.09004 * 109.46461 * 299.99987 * 5 3 2 31 31 H 1.08997 * 109.47215 * 59.99745 * 6 5 3 32 32 H 1.08995 * 109.47246 * 299.99851 * 6 5 3 33 33 H 0.96992 * 120.00401 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.47334 * 148.30706 * 16 7 6 35 35 H 1.09002 * 109.47236 * 28.30492 * 16 7 6 36 36 H 1.08002 * 122.53915 * 0.02562 * 18 17 16 37 37 H 1.07996 * 122.54708 * 180.27732 * 19 18 17 38 38 H 1.09008 * 109.47193 * 299.99595 * 22 21 20 39 39 H 1.08998 * 109.47602 * 59.99657 * 22 21 20 40 40 H 1.09002 * 109.47501 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4630 2.8189 0.0002 8 6 6.1467 2.8542 1.1862 9 1 7.0824 2.3242 1.2861 10 6 5.6372 3.5712 2.2601 11 7 6.0300 3.2906 3.4846 12 14 4.3940 4.9345 1.9673 13 1 3.0204 4.3972 2.1403 14 1 4.6230 6.0310 2.9421 15 1 4.5503 5.4587 0.5868 16 6 6.1945 2.8580 -1.2684 17 6 6.5559 1.4550 -1.6832 18 6 5.8517 0.6963 -2.5244 19 6 6.3822 -0.5604 -2.7601 20 6 7.5125 -0.8255 -2.1033 21 16 8.4130 -2.3369 -2.2002 22 6 9.5699 -2.0872 -3.5747 23 8 7.4331 -3.3072 -2.5430 24 8 9.1132 -2.4074 -0.9656 25 16 7.9707 0.5673 -1.1317 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.9557 0.7811 -0.8908 30 1 3.9563 0.7807 0.8892 31 1 3.6106 3.2357 0.8906 32 1 3.6099 3.2369 -0.8893 33 1 5.6742 3.7918 4.2349 34 1 7.1039 3.4462 -1.1455 35 1 5.5680 3.3135 -2.0352 36 1 4.9388 1.0379 -2.9895 37 1 5.9150 -1.2732 -3.4234 38 1 9.0106 -1.8876 -4.4888 39 1 10.2193 -1.2401 -3.3539 40 1 10.1749 -2.9841 -3.7080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:23 Heat of formation + Delta-G solvation = -91.527641 kcal Electronic energy + Delta-G solvation = -26360.047678 eV Core-core repulsion = 22395.636749 eV Total energy + Delta-G solvation = -3964.410929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.14812 -38.04842 -37.03726 -36.54700 -35.94547 -35.83460 -32.09216 -31.59501 -29.90767 -29.51366 -27.58475 -26.23407 -24.41463 -23.31929 -21.26579 -20.34762 -20.16622 -18.57843 -17.67200 -17.44523 -16.61291 -16.37812 -16.25866 -16.23160 -15.90889 -15.43710 -15.37445 -14.52157 -14.25716 -13.77632 -13.48060 -13.39838 -13.34924 -13.14702 -12.80745 -12.70144 -12.47954 -12.34643 -12.15850 -12.03903 -11.95570 -11.81396 -11.66462 -11.47185 -11.17239 -10.94982 -10.79092 -10.62672 -10.54712 -10.41687 -10.16240 -9.95821 -9.67725 -8.96516 -8.56866 -8.21821 -7.18111 -6.15492 -3.66047 0.01944 0.81258 1.74191 2.17643 2.53559 2.70567 2.91210 3.00622 3.30030 3.42029 3.44582 3.86273 4.15313 4.39325 4.57876 4.75891 4.86830 5.08334 5.16992 5.17744 5.23677 5.27803 5.41091 5.47126 5.53311 5.56168 5.60126 5.74958 5.77518 6.05406 6.10758 6.19714 6.34908 6.42361 6.56438 6.60395 6.71853 7.81434 8.05798 8.17861 8.72759 9.49530 9.82476 10.97741 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.004107 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.686893 B = 6816.710888 C = 8467.905089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.515 6.515 5 C -0.136 4.136 6 C 0.148 3.852 7 N -0.587 5.587 8 C -0.291 4.291 9 H 0.085 0.915 10 C 0.049 3.951 11 N -0.886 5.886 12 Si 0.875 3.125 13 H -0.279 1.279 14 H -0.299 1.299 15 H -0.267 1.267 16 C 0.195 3.805 17 C -0.117 4.117 18 C -0.191 4.191 19 C 0.010 3.990 20 C -0.808 4.808 21 S 2.529 3.471 22 C -0.651 4.651 23 O -0.939 6.939 24 O -0.934 6.934 25 S 0.239 5.761 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -7.887 -15.841 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.403 6.403 5 C -0.176 4.176 6 C 0.022 3.978 7 N -0.306 5.306 8 C -0.419 4.419 9 H 0.103 0.897 10 C -0.154 4.154 11 N -0.525 5.525 12 Si 0.704 3.296 13 H -0.207 1.207 14 H -0.227 1.227 15 H -0.191 1.191 16 C 0.066 3.934 17 C -0.240 4.240 18 C -0.221 4.221 19 C -0.027 4.027 20 C -1.011 5.011 21 S 2.706 3.294 22 C -0.801 4.801 23 O -0.936 6.936 24 O -0.931 6.931 25 S 0.506 5.494 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.092 -7.875 -14.084 16.271 hybrid contribution -2.286 1.042 -1.341 2.848 sum -0.194 -6.833 -15.425 16.872 Atomic orbital electron populations 1.23183 0.77398 1.03169 1.02233 1.86578 1.22744 1.34333 1.84359 1.24398 0.92702 0.80890 0.71388 1.90626 1.67507 1.36377 1.45794 1.22365 0.85081 1.04069 1.06120 1.21158 0.84285 0.91179 1.01217 1.44134 1.00415 1.84273 1.01793 1.18742 1.07921 1.28148 0.87119 0.89719 1.25416 0.97695 0.97189 0.95089 1.69856 1.44816 1.39807 0.98022 0.86972 0.81239 0.83150 0.78209 1.20701 1.22683 1.19123 1.19694 0.97717 0.86980 0.88966 1.26735 0.97476 1.03575 0.96246 1.20201 1.03236 0.94533 1.04139 1.19841 0.91667 0.96015 0.95135 1.35214 1.18768 1.27189 1.19896 1.04346 0.75420 0.73340 0.76323 1.30251 1.17418 1.12085 1.20342 1.93565 1.58114 1.56761 1.85194 1.93607 1.74756 1.85642 1.39126 1.84445 1.22801 1.00801 1.41374 0.88509 0.92150 0.92266 0.88206 0.86994 0.91453 0.92935 0.92300 0.90405 0.91265 0.84195 0.83736 0.85060 0.84937 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.86 10.57 -39.26 -0.41 -6.27 16 3 C 0.46 8.46 7.96 36.01 0.29 8.75 16 4 O -0.52 -10.55 15.73 -18.75 -0.29 -10.84 16 5 C -0.14 -2.52 6.14 -27.88 -0.17 -2.69 16 6 C 0.15 3.04 3.83 -4.04 -0.02 3.02 16 7 N -0.59 -12.44 2.06 -174.62 -0.36 -12.80 16 8 C -0.29 -7.41 9.92 -15.06 -0.15 -7.56 16 9 H 0.09 2.32 8.06 -52.49 -0.42 1.89 16 10 C 0.05 1.33 5.32 -17.43 -0.09 1.24 16 11 N -0.89 -25.78 13.97 55.49 0.78 -25.00 16 12 Si 0.87 21.51 24.99 -169.99 -4.25 17.26 16 13 H -0.28 -7.02 6.68 56.52 0.38 -6.64 16 14 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.20 3.31 6.21 -5.20 -0.03 3.28 16 17 C -0.12 -1.81 5.94 -36.00 -0.21 -2.03 16 18 C -0.19 -2.59 8.41 -41.21 -0.35 -2.93 16 19 C 0.01 0.12 9.78 -41.21 -0.40 -0.28 16 20 C -0.81 -10.91 6.22 29.04 0.18 -10.73 16 21 S 2.53 29.46 5.94 -107.50 -0.64 28.82 16 22 C -0.65 -4.17 10.79 101.05 1.09 -3.07 16 23 O -0.94 -13.35 17.64 -57.54 -1.02 -14.36 16 24 O -0.93 -14.43 17.77 -57.54 -1.02 -15.45 16 25 S 0.24 3.75 23.13 -107.50 -2.49 1.27 16 26 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.10 1.65 6.22 -51.93 -0.32 1.33 16 30 H 0.11 2.25 8.14 -51.93 -0.42 1.83 16 31 H 0.07 1.59 3.22 -51.93 -0.17 1.42 16 32 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 35 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 36 H 0.14 1.64 8.04 -52.49 -0.42 1.22 16 37 H 0.15 1.49 8.01 -52.49 -0.42 1.07 16 38 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -35.36 366.37 -8.09 -43.45 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.11 Total: -0.07 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 1.20 Total: -11.53 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.42 Total: -37.80 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.75 Total: -46.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.25 Total: 17.26 kcal Atomic # 16 Polarization: 33.21 SS G_CDS: -3.12 Total: 30.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.36 -8.09 -43.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.077 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds