Wall clock time and date at job start Wed Apr 1 2020 04:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99616 * 2 1 4 4 O 1.20821 * 120.00531 * 0.02562 * 3 2 1 5 5 C 1.50711 * 119.99985 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47109 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46826 * 179.97438 * 6 5 3 8 8 C 1.36943 * 119.99970 * 269.99573 * 7 6 5 9 9 H 1.07999 * 119.99744 * 141.80983 * 8 7 6 10 10 C 1.38810 * 120.00064 * 321.81456 * 8 7 6 11 11 N 1.31625 * 120.00304 * 158.79072 * 10 8 7 12 12 Si 1.86807 * 119.99993 * 338.78980 * 10 8 7 13 13 H 1.48502 * 109.46953 * 95.35131 * 12 10 8 14 14 H 1.48496 * 109.47216 * 215.34897 * 12 10 8 15 15 H 1.48493 * 109.46835 * 335.34940 * 12 10 8 16 16 C 1.46496 * 120.00243 * 90.00254 * 7 6 5 17 17 C 1.50698 * 109.46897 * 268.30980 * 16 7 6 18 18 C 1.33388 * 125.20725 * 95.59804 * 17 16 7 19 19 C 1.38423 * 114.92563 * 179.79310 * 18 17 16 20 20 C 1.33391 * 114.91825 * 0.43012 * 19 18 17 21 21 S 1.76201 * 125.20315 * 179.86416 * 20 19 18 22 22 C 1.81389 * 104.45300 * 89.71853 * 21 20 19 23 23 O 1.42104 * 104.27571 * 333.64280 * 21 20 19 24 24 O 1.42103 * 104.27731 * 205.79034 * 21 20 19 25 25 S 1.75884 * 109.59435 * 359.59345 * 20 19 18 26 26 H 1.09004 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46952 * 299.99674 * 1 2 3 28 28 H 1.08995 * 109.47335 * 60.00045 * 1 2 3 29 29 H 1.09001 * 109.46824 * 59.99835 * 5 3 2 30 30 H 1.09004 * 109.46461 * 299.99987 * 5 3 2 31 31 H 1.08997 * 109.47215 * 59.99745 * 6 5 3 32 32 H 1.08995 * 109.47246 * 299.99851 * 6 5 3 33 33 H 0.96992 * 120.00401 * 179.97438 * 11 10 8 34 34 H 1.08998 * 109.47334 * 148.30706 * 16 7 6 35 35 H 1.09002 * 109.47236 * 28.30492 * 16 7 6 36 36 H 1.08002 * 122.53915 * 0.02562 * 18 17 16 37 37 H 1.07996 * 122.54708 * 180.27732 * 19 18 17 38 38 H 1.09008 * 109.47193 * 299.99595 * 22 21 20 39 39 H 1.08998 * 109.47602 * 59.99657 * 22 21 20 40 40 H 1.09002 * 109.47501 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4630 2.8189 0.0002 8 6 6.1467 2.8542 1.1862 9 1 7.0824 2.3242 1.2861 10 6 5.6372 3.5712 2.2601 11 7 6.0300 3.2906 3.4846 12 14 4.3940 4.9345 1.9673 13 1 3.0204 4.3972 2.1403 14 1 4.6230 6.0310 2.9421 15 1 4.5503 5.4587 0.5868 16 6 6.1945 2.8580 -1.2684 17 6 6.5559 1.4550 -1.6832 18 6 5.8517 0.6963 -2.5244 19 6 6.3822 -0.5604 -2.7601 20 6 7.5125 -0.8255 -2.1033 21 16 8.4130 -2.3369 -2.2002 22 6 9.5699 -2.0872 -3.5747 23 8 7.4331 -3.3072 -2.5430 24 8 9.1132 -2.4074 -0.9656 25 16 7.9707 0.5673 -1.1317 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.9557 0.7811 -0.8908 30 1 3.9563 0.7807 0.8892 31 1 3.6106 3.2357 0.8906 32 1 3.6099 3.2369 -0.8893 33 1 5.6742 3.7918 4.2349 34 1 7.1039 3.4462 -1.1455 35 1 5.5680 3.3135 -2.0352 36 1 4.9388 1.0379 -2.9895 37 1 5.9150 -1.2732 -3.4234 38 1 9.0106 -1.8876 -4.4888 39 1 10.2193 -1.2401 -3.3539 40 1 10.1749 -2.9841 -3.7080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:22 Heat of formation + Delta-G solvation = -117.215454 kcal Electronic energy + Delta-G solvation = -26361.161585 eV Core-core repulsion = 22395.636749 eV Total energy + Delta-G solvation = -3965.524836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54334 -39.27197 -38.13729 -37.87021 -37.32675 -36.94929 -34.03786 -33.00074 -31.18578 -30.25105 -28.70772 -27.66109 -26.02442 -24.57850 -22.81961 -21.81616 -21.21211 -19.62881 -18.98358 -18.82828 -18.18368 -17.88317 -17.59622 -17.16010 -17.12441 -16.91934 -16.45516 -15.98046 -15.51492 -15.28368 -14.73962 -14.61482 -14.28550 -14.13257 -14.02924 -13.91816 -13.89426 -13.63153 -13.37986 -13.30304 -13.10721 -13.02677 -12.96535 -12.86256 -12.56257 -12.49001 -12.07109 -11.91970 -11.83806 -11.78875 -11.63589 -11.56009 -11.47925 -10.76263 -9.94158 -9.40859 -8.96762 -8.24038 -5.68822 -0.82844 -0.29887 0.61042 1.05256 1.10203 1.32811 1.40091 1.48475 1.63197 1.74011 1.98054 2.37888 3.00930 3.03084 3.33388 3.37125 3.86202 3.93359 4.03025 4.13411 4.22241 4.25529 4.28456 4.29555 4.37227 4.50990 4.54678 4.62913 4.66204 4.83633 4.87765 4.96749 4.99189 5.02234 5.22056 5.32159 5.52123 5.87917 6.16906 6.66257 6.86543 7.51760 7.90955 8.93766 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.004107 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.686893 B = 6816.710888 C = 8467.905089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.469 3.531 4 O -0.539 6.539 5 C -0.127 4.127 6 C 0.146 3.854 7 N -0.598 5.598 8 C -0.261 4.261 9 H 0.056 0.944 10 C -0.005 4.005 11 N -0.939 5.939 12 Si 0.932 3.068 13 H -0.291 1.291 14 H -0.309 1.309 15 H -0.248 1.248 16 C 0.195 3.805 17 C -0.135 4.135 18 C -0.174 4.174 19 C 0.008 3.992 20 C -0.797 4.797 21 S 2.523 3.477 22 C -0.617 4.617 23 O -0.969 6.969 24 O -0.984 6.984 25 S 0.173 5.827 26 H 0.133 0.867 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 -8.854 -19.911 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.429 6.429 5 C -0.167 4.167 6 C 0.021 3.979 7 N -0.318 5.318 8 C -0.390 4.390 9 H 0.074 0.926 10 C -0.203 4.203 11 N -0.581 5.581 12 Si 0.761 3.239 13 H -0.219 1.219 14 H -0.238 1.238 15 H -0.172 1.172 16 C 0.068 3.932 17 C -0.257 4.257 18 C -0.205 4.205 19 C -0.027 4.027 20 C -0.998 4.998 21 S 2.704 3.296 22 C -0.772 4.772 23 O -0.967 6.967 24 O -0.981 6.981 25 S 0.440 5.560 26 H 0.151 0.849 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.185 0.815 37 H 0.193 0.807 38 H 0.180 0.820 39 H 0.167 0.833 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.205 -8.848 -18.173 20.248 hybrid contribution -1.987 1.138 -0.273 2.306 sum -0.782 -7.710 -18.446 20.008 Atomic orbital electron populations 1.23568 0.74892 1.05741 1.02512 1.86544 1.25134 1.32876 1.83706 1.24154 0.92447 0.81166 0.70862 1.90618 1.67962 1.37269 1.47092 1.22142 0.85825 1.02671 1.06111 1.21092 0.83680 0.92356 1.00776 1.44169 1.00799 1.84844 1.02022 1.18627 1.06451 1.25418 0.88526 0.92648 1.25940 0.99946 0.99410 0.94971 1.69973 1.47650 1.41629 0.98893 0.86056 0.78724 0.80595 0.78504 1.21882 1.23813 1.17183 1.19819 0.97666 0.88141 0.87594 1.26372 0.98091 1.03128 0.98133 1.20536 1.03239 0.94229 1.02485 1.20236 0.91124 0.96252 0.95075 1.35480 1.19381 1.26310 1.18612 1.04440 0.75636 0.72278 0.77227 1.29996 1.15710 1.14304 1.17145 1.93523 1.60013 1.57403 1.85754 1.93551 1.75208 1.85968 1.43392 1.84703 1.24563 1.03273 1.43506 0.84851 0.92621 0.91315 0.85909 0.89296 0.94583 0.90483 0.92750 0.90924 0.87966 0.81526 0.80663 0.82050 0.83257 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.37 -11.04 10.57 -51.41 -0.54 -11.58 16 3 C 0.47 16.44 7.96 71.24 0.57 17.01 16 4 O -0.54 -21.32 15.73 21.98 0.35 -20.98 16 5 C -0.13 -4.58 6.14 29.85 0.18 -4.40 16 6 C 0.15 5.86 3.83 86.38 0.33 6.19 16 7 N -0.60 -24.99 2.06 -706.37 -1.45 -26.45 16 8 C -0.26 -13.61 9.92 84.03 0.83 -12.77 16 9 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 10 C 0.00 -0.27 5.32 84.86 0.45 0.18 16 11 N -0.94 -57.22 13.97 21.65 0.30 -56.92 16 12 Si 0.93 45.69 24.99 68.60 1.71 47.41 16 13 H -0.29 -14.63 6.68 99.48 0.66 -13.97 16 14 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 15 H -0.25 -11.23 7.11 99.48 0.71 -10.53 16 16 C 0.19 6.29 6.21 85.63 0.53 6.82 16 17 C -0.13 -3.98 5.94 24.59 0.15 -3.83 16 18 C -0.17 -4.14 8.41 21.22 0.18 -3.96 16 19 C 0.01 0.18 9.78 21.22 0.21 0.39 16 20 C -0.80 -20.20 6.22 66.72 0.42 -19.79 16 21 S 2.52 54.81 5.94 -56.49 -0.34 54.47 16 22 C -0.62 -5.14 10.79 113.37 1.22 -3.92 16 23 O -0.97 -25.96 17.64 -127.65 -2.25 -28.21 16 24 O -0.98 -30.71 17.77 -127.65 -2.27 -32.98 16 25 S 0.17 5.46 23.13 -56.49 -1.31 4.15 16 26 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 28 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.12 3.76 6.22 -2.39 -0.01 3.75 16 30 H 0.09 3.63 8.14 -2.38 -0.02 3.61 16 31 H 0.04 1.69 3.22 -2.39 -0.01 1.68 16 32 H 0.08 2.69 7.84 -2.39 -0.02 2.67 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.07 2.39 8.05 -2.39 -0.02 2.38 16 35 H 0.10 2.62 7.87 -2.39 -0.02 2.61 16 36 H 0.17 3.08 8.04 -2.91 -0.02 3.05 16 37 H 0.18 2.84 8.01 -2.91 -0.02 2.82 16 38 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.15 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -81.25 366.37 1.49 -79.76 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 6.27 Total: -16.32 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -1.15 Total: -83.37 kcal Atomic # 8 Polarization: -89.04 SS G_CDS: -4.72 Total: -93.75 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.71 Total: 47.41 kcal Atomic # 16 Polarization: 60.26 SS G_CDS: -1.64 Total: 58.62 kcal Total: -81.25 1.49 -79.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.455 kcal (2) G-P(sol) polarization free energy of solvation -81.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds