Wall clock time and date at job start Wed Apr 1 2020 04:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48500 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46880 * 300.00175 * 3 2 1 6 6 H 1.48501 * 109.47409 * 59.99944 * 3 2 1 7 7 C 1.38944 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00460 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00085 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00320 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99712 * 179.97438 * 10 9 7 13 13 O 1.45204 * 109.46704 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99595 * 180.02562 * 13 12 10 15 15 O 1.20821 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99887 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.47331 * 303.67397 * 16 14 13 18 18 O 1.42897 * 109.47212 * 183.67113 * 16 14 13 19 19 C 1.50703 * 109.47095 * 63.67652 * 16 14 13 20 20 C 1.38255 * 120.00559 * 82.83037 * 19 16 14 21 21 C 1.38204 * 120.00188 * 180.27212 * 20 19 16 22 22 C 1.38261 * 120.00273 * 359.75592 * 21 20 19 23 23 C 1.38217 * 119.99478 * 359.97438 * 22 21 20 24 24 C 1.38216 * 119.99641 * 262.60408 * 19 16 14 25 25 C 1.50705 * 120.00143 * 359.97438 * 24 19 16 26 26 F 1.39901 * 109.47223 * 179.56381 * 25 24 19 27 27 F 1.39896 * 109.47061 * 59.56498 * 25 24 19 28 28 F 1.39902 * 109.46978 * 299.56325 * 25 24 19 29 29 H 0.96995 * 119.99683 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99516 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46930 * 60.00400 * 12 10 9 32 32 H 1.09000 * 109.47554 * 299.99989 * 12 10 9 33 33 H 0.96693 * 114.00353 * 300.00235 * 18 16 14 34 34 H 1.08004 * 119.99557 * 0.02562 * 20 19 16 35 35 H 1.08002 * 119.99886 * 179.72192 * 21 20 19 36 36 H 1.07999 * 120.00587 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.99688 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1875 -5.9665 0.0004 14 6 1.6744 -7.2069 0.0003 15 8 0.4766 -7.3652 0.0003 16 6 2.5924 -8.4020 -0.0011 17 1 3.2649 -8.3427 -0.8568 18 8 1.8163 -9.5988 -0.0872 19 6 3.3992 -8.4172 1.2717 20 6 2.8571 -8.9478 2.4276 21 6 3.5949 -8.9566 3.5962 22 6 4.8771 -8.4392 3.6082 23 6 5.4210 -7.9138 2.4513 24 6 4.6828 -7.9048 1.2824 25 6 5.2758 -7.3315 0.0211 26 9 6.5705 -6.8702 0.2823 27 9 4.4834 -6.2688 -0.4256 28 9 5.3242 -8.3236 -0.9642 29 1 -0.4849 0.8400 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6169 -4.9208 -0.8887 32 1 0.6175 -4.9205 0.8913 33 1 1.1943 -9.7176 0.6434 34 1 1.8555 -9.3519 2.4183 35 1 3.1698 -9.3670 4.5002 36 1 5.4535 -8.4457 4.5215 37 1 6.4224 -7.5094 2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885124013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:24 Heat of formation + Delta-G solvation = -282.800018 kcal Electronic energy + Delta-G solvation = -31489.299751 eV Core-core repulsion = 26396.541067 eV Total energy + Delta-G solvation = -5092.758684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.10430 -47.69074 -47.35462 -40.96887 -39.67179 -38.22000 -37.17164 -35.95868 -33.98297 -32.76326 -31.81993 -31.36125 -29.00586 -27.42749 -25.98215 -24.58785 -22.92431 -22.20977 -21.12372 -19.59382 -18.85791 -18.54701 -18.29968 -18.16206 -18.06920 -17.41684 -16.82863 -16.25858 -15.73866 -15.66257 -15.30061 -14.92879 -14.73853 -14.57724 -14.36316 -14.07477 -13.98830 -13.96014 -13.83705 -13.56544 -13.46325 -13.30371 -13.19601 -12.86717 -12.53159 -12.27044 -12.11973 -11.95587 -11.61556 -11.54123 -11.28231 -11.15015 -10.47861 -10.42635 -10.38398 -10.28453 -9.59828 -9.57554 -9.31977 -8.48739 -8.06524 -6.49063 -3.90747 0.52557 0.78278 2.02851 2.46681 2.64419 3.09642 3.12231 3.24209 3.31701 3.68634 3.75103 3.83478 3.91150 3.99988 4.11449 4.34604 4.44057 4.57908 4.59713 4.69767 4.92186 5.02323 5.09090 5.15395 5.17197 5.39817 5.47350 5.66820 5.78914 5.80752 5.94157 6.04231 6.31959 6.47061 6.95141 7.49086 7.65239 7.95623 8.49951 9.08645 9.40759 9.90849 10.68414 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.003311 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.784537 B = 8453.769748 C = 9109.936315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.107 0.893 9 N -0.555 5.555 10 C 0.439 3.561 11 O -0.566 6.566 12 C 0.057 3.943 13 O -0.307 6.307 14 C 0.433 3.567 15 O -0.500 6.500 16 C 0.150 3.850 17 H 0.149 0.851 18 O -0.515 6.515 19 C -0.075 4.075 20 C -0.109 4.109 21 C -0.086 4.086 22 C -0.112 4.112 23 C -0.069 4.069 24 C -0.150 4.150 25 C 0.493 3.507 26 F -0.176 7.176 27 F -0.135 7.135 28 F -0.181 7.181 29 H 0.273 0.727 30 H 0.394 0.606 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.384 0.616 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 -19.792 6.358 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.124 0.876 9 N -0.193 5.193 10 C 0.224 3.776 11 O -0.449 6.449 12 C -0.020 4.020 13 O -0.220 6.220 14 C 0.275 3.725 15 O -0.389 6.389 16 C 0.089 3.911 17 H 0.166 0.834 18 O -0.321 6.321 19 C -0.075 4.075 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.130 4.130 23 C -0.087 4.087 24 C -0.152 4.152 25 C 0.438 3.562 26 F -0.158 7.158 27 F -0.116 7.116 28 F -0.163 7.163 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.234 0.766 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.755 -19.693 5.773 21.605 hybrid contribution -0.730 1.128 0.291 1.375 sum 6.025 -18.565 6.063 20.438 Atomic orbital electron populations 1.69624 1.05993 1.28311 1.49989 1.25297 0.95669 0.99819 0.97003 0.85756 0.79729 0.80831 0.77782 1.19096 1.20641 1.20661 1.19767 0.93485 0.81723 1.47909 0.87568 1.41702 1.09314 1.04070 1.64176 1.19270 0.88423 0.83936 0.86014 1.90590 1.13103 1.86616 1.54604 1.22839 0.90934 0.84783 1.03456 1.86652 1.39807 1.13592 1.81979 1.24261 0.88968 0.85956 0.73356 1.90677 1.16136 1.86687 1.45365 1.20501 0.90530 0.82152 0.97935 0.83424 1.86727 1.55973 1.37068 1.52371 1.19799 0.93394 0.98638 0.95717 1.20889 1.00454 0.99668 0.91702 1.21332 0.94157 0.96992 0.97888 1.21265 0.95737 0.97837 0.98123 1.21089 1.00287 0.96241 0.91046 1.19847 0.95915 1.05075 0.94358 1.18429 0.76630 0.77076 0.84022 1.93160 1.39377 1.89318 1.93897 1.93533 1.72334 1.55857 1.89889 1.93163 1.96019 1.62112 1.64959 0.91734 0.77259 0.89458 0.89610 0.76558 0.84775 0.84562 0.84404 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.52 7.86 -10.98 -0.09 10.44 16 11 O -0.57 -15.46 16.08 -14.11 -0.23 -15.69 16 12 C 0.06 1.09 5.94 36.01 0.21 1.31 16 13 O -0.31 -5.68 6.88 -45.90 -0.32 -6.00 16 14 C 0.43 6.87 7.26 36.01 0.26 7.13 16 15 O -0.50 -8.47 16.08 -25.47 -0.41 -8.88 16 16 C 0.15 1.93 3.01 -29.03 -0.09 1.84 16 17 H 0.15 1.93 5.21 -51.93 -0.27 1.66 16 18 O -0.52 -5.82 12.80 -55.16 -0.71 -6.52 16 19 C -0.07 -0.88 4.92 -104.62 -0.51 -1.39 16 20 C -0.11 -0.99 9.33 -39.59 -0.37 -1.36 16 21 C -0.09 -0.65 10.05 -39.59 -0.40 -1.05 16 22 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 23 C -0.07 -0.69 9.43 -39.58 -0.37 -1.07 16 24 C -0.15 -1.86 5.37 -104.62 -0.56 -2.42 16 25 C 0.49 6.96 2.79 36.01 0.10 7.06 16 26 F -0.18 -2.45 15.97 2.25 0.04 -2.41 16 27 F -0.14 -2.40 13.43 2.25 0.03 -2.37 16 28 F -0.18 -2.38 15.44 2.25 0.03 -2.35 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 31 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 32 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 33 H 0.38 3.08 7.20 45.56 0.33 3.41 16 34 H 0.13 0.88 6.68 -52.48 -0.35 0.53 16 35 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 1.26 7.16 -52.49 -0.38 0.88 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -33.55 339.07 -5.45 -39.00 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -2.19 Total: 10.49 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -2.45 Total: 11.36 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.45 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.66 Total: -37.10 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.10 Total: -7.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.55 -5.45 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885124013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -243.803 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds