Wall clock time and date at job start Wed Apr 1 2020 04:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48500 * 109.47216 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46880 * 300.00175 * 3 2 1 6 6 H 1.48501 * 109.47409 * 59.99944 * 3 2 1 7 7 C 1.38944 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99579 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00460 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00085 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00320 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99712 * 179.97438 * 10 9 7 13 13 O 1.45204 * 109.46704 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99595 * 180.02562 * 13 12 10 15 15 O 1.20821 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99887 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.47331 * 303.67397 * 16 14 13 18 18 O 1.42897 * 109.47212 * 183.67113 * 16 14 13 19 19 C 1.50703 * 109.47095 * 63.67652 * 16 14 13 20 20 C 1.38255 * 120.00559 * 82.83037 * 19 16 14 21 21 C 1.38204 * 120.00188 * 180.27212 * 20 19 16 22 22 C 1.38261 * 120.00273 * 359.75592 * 21 20 19 23 23 C 1.38217 * 119.99478 * 359.97438 * 22 21 20 24 24 C 1.38216 * 119.99641 * 262.60408 * 19 16 14 25 25 C 1.50705 * 120.00143 * 359.97438 * 24 19 16 26 26 F 1.39901 * 109.47223 * 179.56381 * 25 24 19 27 27 F 1.39896 * 109.47061 * 59.56498 * 25 24 19 28 28 F 1.39902 * 109.46978 * 299.56325 * 25 24 19 29 29 H 0.96995 * 119.99683 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99516 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46930 * 60.00400 * 12 10 9 32 32 H 1.09000 * 109.47554 * 299.99989 * 12 10 9 33 33 H 0.96693 * 114.00353 * 300.00235 * 18 16 14 34 34 H 1.08004 * 119.99557 * 0.02562 * 20 19 16 35 35 H 1.08002 * 119.99886 * 179.72192 * 21 20 19 36 36 H 1.07999 * 120.00587 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.99688 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1875 -5.9665 0.0004 14 6 1.6744 -7.2069 0.0003 15 8 0.4766 -7.3652 0.0003 16 6 2.5924 -8.4020 -0.0011 17 1 3.2649 -8.3427 -0.8568 18 8 1.8163 -9.5988 -0.0872 19 6 3.3992 -8.4172 1.2717 20 6 2.8571 -8.9478 2.4276 21 6 3.5949 -8.9566 3.5962 22 6 4.8771 -8.4392 3.6082 23 6 5.4210 -7.9138 2.4513 24 6 4.6828 -7.9048 1.2824 25 6 5.2758 -7.3315 0.0211 26 9 6.5705 -6.8702 0.2823 27 9 4.4834 -6.2688 -0.4256 28 9 5.3242 -8.3236 -0.9642 29 1 -0.4849 0.8400 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6169 -4.9208 -0.8887 32 1 0.6175 -4.9205 0.8913 33 1 1.1943 -9.7176 0.6434 34 1 1.8555 -9.3519 2.4183 35 1 3.1698 -9.3670 4.5002 36 1 5.4535 -8.4457 4.5215 37 1 6.4224 -7.5094 2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885124013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:23 Heat of formation + Delta-G solvation = -304.955372 kcal Electronic energy + Delta-G solvation = -31490.260479 eV Core-core repulsion = 26396.541067 eV Total energy + Delta-G solvation = -5093.719412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.21754 -48.77329 -48.55396 -42.12944 -40.65779 -39.97194 -38.30766 -37.21875 -36.00877 -33.55751 -33.38531 -32.57483 -30.42290 -28.62980 -26.95023 -26.45875 -23.81542 -23.09796 -22.23193 -21.43238 -20.07822 -19.77566 -19.63346 -19.44388 -19.33787 -18.50944 -18.06230 -17.60452 -17.37531 -16.68349 -16.54339 -16.06061 -15.86675 -15.78339 -15.73061 -15.47860 -15.42137 -15.04929 -14.93870 -14.88256 -14.69148 -14.53722 -14.17055 -13.93695 -13.81492 -13.63499 -13.56744 -13.30104 -12.94540 -12.85607 -12.46055 -12.38977 -12.18830 -12.11684 -11.93008 -11.56789 -11.49020 -10.46981 -10.28693 -10.09801 -10.06371 -8.51877 -6.01803 -0.23738 0.08621 0.80275 1.19421 1.34452 1.43033 1.57413 1.63764 1.88451 2.27870 2.38381 2.67620 2.92339 2.94196 2.98117 3.13108 3.14551 3.38146 3.55386 3.56839 3.85503 3.98480 4.07324 4.11900 4.21525 4.29384 4.33788 4.48789 4.75002 5.05955 5.11781 5.18661 5.30122 5.37852 5.70664 5.89478 6.17936 6.40685 6.51863 7.04414 7.41340 7.95426 8.65609 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.003311 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.784537 B = 8453.769748 C = 9109.936315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.334 4.334 8 H 0.083 0.917 9 N -0.561 5.561 10 C 0.438 3.562 11 O -0.604 6.604 12 C 0.067 3.933 13 O -0.323 6.323 14 C 0.435 3.565 15 O -0.512 6.512 16 C 0.161 3.839 17 H 0.140 0.860 18 O -0.516 6.516 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.078 4.078 22 C -0.105 4.105 23 C -0.083 4.083 24 C -0.172 4.172 25 C 0.487 3.513 26 F -0.179 7.179 27 F -0.162 7.162 28 F -0.179 7.179 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.399 0.601 34 H 0.159 0.841 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -20.749 8.207 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.101 0.899 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.490 6.490 12 C -0.011 4.011 13 O -0.237 6.237 14 C 0.277 3.723 15 O -0.401 6.401 16 C 0.099 3.901 17 H 0.157 0.843 18 O -0.324 6.324 19 C -0.095 4.095 20 C -0.129 4.129 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.174 4.174 25 C 0.433 3.567 26 F -0.161 7.161 27 F -0.143 7.143 28 F -0.161 7.161 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.252 0.748 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.188 0.812 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.176 -20.675 7.628 22.887 hybrid contribution -0.559 1.325 -0.249 1.459 sum 5.617 -19.351 7.379 21.458 Atomic orbital electron populations 1.69679 1.06914 1.29555 1.49573 1.26082 0.96546 1.02461 0.95813 0.84826 0.78053 0.76762 0.78426 1.19671 1.19568 1.19372 1.19728 0.92862 0.83367 1.50345 0.89874 1.41729 1.09460 1.04147 1.64534 1.20035 0.88214 0.85207 0.84141 1.90562 1.15041 1.87493 1.55873 1.22607 0.90310 0.82880 1.05269 1.86677 1.40092 1.14408 1.82513 1.24911 0.89353 0.85599 0.72393 1.90659 1.16746 1.86691 1.46011 1.20353 0.89981 0.81031 0.98704 0.84298 1.86715 1.56334 1.35905 1.53436 1.19793 0.93210 1.00472 0.96075 1.21288 1.01680 0.98755 0.91169 1.21818 0.93669 0.95506 0.98565 1.21708 0.96176 0.96071 0.98273 1.21337 1.00695 0.96833 0.91195 1.19854 0.96834 1.06683 0.93979 1.18778 0.76331 0.76534 0.85053 1.93138 1.39580 1.89432 1.93933 1.93470 1.73125 1.57359 1.90385 1.93154 1.96000 1.61741 1.65186 0.91049 0.76706 0.87796 0.87412 0.74834 0.82304 0.80841 0.81158 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 2 C -0.01 -0.45 5.50 84.92 0.47 0.01 16 3 Si 1.00 42.33 29.55 68.60 2.03 44.36 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.85 5.29 -306.99 -1.62 -30.48 16 10 C 0.44 21.46 7.86 87.66 0.69 22.14 16 11 O -0.60 -34.23 16.08 15.72 0.25 -33.97 16 12 C 0.07 2.53 5.94 71.24 0.42 2.96 16 13 O -0.32 -12.06 6.88 -45.07 -0.31 -12.37 16 14 C 0.44 13.60 7.26 71.24 0.52 14.11 16 15 O -0.51 -16.77 16.08 28.40 0.46 -16.31 16 16 C 0.16 4.06 3.01 29.10 0.09 4.15 16 17 H 0.14 3.74 5.21 -2.39 -0.01 3.73 16 18 O -0.52 -10.92 12.80 -129.93 -1.66 -12.58 16 19 C -0.09 -2.13 4.92 -19.86 -0.10 -2.22 16 20 C -0.11 -1.71 9.33 22.27 0.21 -1.50 16 21 C -0.08 -0.88 10.05 22.27 0.22 -0.66 16 22 C -0.10 -1.33 10.05 22.27 0.22 -1.11 16 23 C -0.08 -1.58 9.43 22.27 0.21 -1.37 16 24 C -0.17 -4.24 5.37 -19.86 -0.11 -4.34 16 25 C 0.49 14.31 2.79 71.24 0.20 14.51 16 26 F -0.18 -5.21 15.97 44.97 0.72 -4.49 16 27 F -0.16 -6.07 13.43 44.97 0.60 -5.47 16 28 F -0.18 -4.92 15.44 44.97 0.69 -4.22 16 29 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 31 H 0.10 3.59 8.13 -2.39 -0.02 3.57 16 32 H 0.11 3.61 8.13 -2.39 -0.02 3.59 16 33 H 0.40 5.52 7.20 -74.06 -0.53 4.99 16 34 H 0.16 1.52 6.68 -2.91 -0.02 1.50 16 35 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.15 2.54 7.16 -2.91 -0.02 2.51 16 Total: -1.00 -73.86 339.07 5.22 -68.63 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.07 Total: 26.76 kcal Atomic # 6 Polarization: 24.84 SS G_CDS: 3.86 Total: 28.69 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.34 Total: -79.04 kcal Atomic # 8 Polarization: -73.96 SS G_CDS: -1.26 Total: -75.23 kcal Atomic # 9 Polarization: -16.20 SS G_CDS: 2.02 Total: -14.18 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.86 5.22 -68.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885124013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.321 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -310.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -304.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds