Wall clock time and date at job start Wed Apr 1 2020 04:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 120.00069 * 2 1 4 4 H 1.48495 * 109.47040 * 270.00004 * 3 2 1 5 5 H 1.48502 * 109.46915 * 30.00218 * 3 2 1 6 6 H 1.48500 * 109.47018 * 150.00008 * 3 2 1 7 7 C 1.38948 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99696 * 0.02562 * 7 2 1 9 9 N 1.37094 * 120.00109 * 180.02562 * 7 2 1 10 10 C 1.34774 * 120.00070 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99982 * 179.97438 * 10 9 7 13 13 O 1.45203 * 109.46875 * 180.02562 * 12 10 9 14 14 C 1.34234 * 116.99765 * 180.02562 * 13 12 10 15 15 O 1.20822 * 119.99917 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00031 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.47646 * 45.30624 * 16 14 13 18 18 O 1.42899 * 109.47384 * 165.31616 * 16 14 13 19 19 C 1.50706 * 109.46901 * 285.31197 * 16 14 13 20 20 C 1.38251 * 120.00211 * 274.55741 * 19 16 14 21 21 C 1.38212 * 120.00299 * 179.97438 * 20 19 16 22 22 C 1.38258 * 120.00028 * 359.97438 * 21 20 19 23 23 C 1.38212 * 119.99588 * 359.80912 * 22 21 20 24 24 C 1.38213 * 119.99914 * 94.57541 * 19 16 14 25 25 C 1.50695 * 120.00102 * 359.97438 * 24 19 16 26 26 F 1.39902 * 109.47407 * 175.17116 * 25 24 19 27 27 F 1.39898 * 109.47226 * 55.17089 * 25 24 19 28 28 F 1.39899 * 109.47214 * 295.16992 * 25 24 19 29 29 H 0.97008 * 119.99610 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99869 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47314 * 60.00171 * 12 10 9 32 32 H 1.08994 * 109.47310 * 299.99803 * 12 10 9 33 33 H 0.96692 * 114.00460 * 59.99315 * 18 16 14 34 34 H 1.08005 * 119.99822 * 359.97438 * 20 19 16 35 35 H 1.07997 * 120.00072 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99924 * 179.97438 * 22 21 20 37 37 H 1.08001 * 119.99850 * 180.23552 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5607 -2.3705 0.0011 13 8 6.0447 -3.7395 0.0005 14 6 7.3754 -3.9154 0.0009 15 8 8.1114 -2.9572 0.0013 16 6 7.9514 -5.3079 -0.0003 17 1 7.4228 -5.9192 -0.7317 18 8 9.3380 -5.2496 -0.3410 19 6 7.7960 -5.9169 1.3695 20 6 8.7463 -5.6769 2.3446 21 6 8.6035 -6.2350 3.6009 22 6 7.5101 -7.0329 3.8828 23 6 6.5578 -7.2691 2.9093 24 6 6.7037 -6.7156 1.6508 25 6 5.6678 -6.9771 0.5880 26 9 4.7262 -7.8928 1.0697 27 9 6.2894 -7.5025 -0.5499 28 9 5.0261 -5.7787 0.2574 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3633 0.0007 31 1 5.9241 -1.8567 0.8910 32 1 5.9240 -1.8567 -0.8889 33 1 9.8709 -4.7209 0.2684 34 1 9.6002 -5.0534 2.1246 35 1 9.3460 -6.0479 4.3625 36 1 7.3988 -7.4693 4.8644 37 1 5.7017 -7.8892 3.1306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885124015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:26 Heat of formation + Delta-G solvation = -274.349012 kcal Electronic energy + Delta-G solvation = -31558.872695 eV Core-core repulsion = 26466.480474 eV Total energy + Delta-G solvation = -5092.392221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.09740 -47.71001 -47.31027 -41.05111 -39.75092 -38.39300 -37.25701 -36.04875 -34.03633 -32.81647 -31.86470 -31.77032 -29.18772 -27.55931 -26.00646 -24.46244 -22.94828 -22.24567 -21.16886 -19.64408 -18.92157 -18.61724 -18.56136 -18.30163 -18.18199 -17.45746 -16.89085 -16.33124 -15.81863 -15.67340 -15.36918 -15.02466 -14.87206 -14.77185 -14.35320 -14.12841 -14.02287 -13.88256 -13.80532 -13.52258 -13.40325 -13.31995 -13.08408 -12.89950 -12.65727 -12.40694 -12.23062 -12.17840 -12.03031 -11.59894 -11.31937 -11.26256 -10.64991 -10.59470 -10.49339 -10.03738 -9.65181 -9.63326 -9.38034 -8.62373 -8.27074 -6.37609 -3.90189 0.45621 0.72237 1.94738 2.37489 2.62756 2.98862 3.03561 3.05034 3.12310 3.57706 3.69034 3.80041 3.88309 3.97205 4.04753 4.25864 4.31667 4.50040 4.56386 4.66730 4.83320 4.88931 5.03865 5.11595 5.11887 5.30123 5.35010 5.52318 5.67672 5.73871 5.75559 5.88584 6.25846 6.33992 6.91690 7.44238 7.58849 8.02724 8.49762 8.85835 9.31779 9.67998 10.74790 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.003395 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.107138 B = 8246.145327 C = 8914.302759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.123 0.877 9 N -0.582 5.582 10 C 0.448 3.552 11 O -0.546 6.546 12 C 0.055 3.945 13 O -0.306 6.306 14 C 0.435 3.565 15 O -0.502 6.502 16 C 0.145 3.855 17 H 0.154 0.846 18 O -0.516 6.516 19 C -0.077 4.077 20 C -0.107 4.107 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.069 4.069 24 C -0.153 4.153 25 C 0.490 3.510 26 F -0.177 7.177 27 F -0.180 7.180 28 F -0.128 7.128 29 H 0.275 0.725 30 H 0.372 0.628 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.384 0.616 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.002 -12.317 6.792 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.140 0.860 9 N -0.222 5.222 10 C 0.232 3.768 11 O -0.426 6.426 12 C -0.023 4.023 13 O -0.219 6.219 14 C 0.277 3.723 15 O -0.391 6.391 16 C 0.084 3.916 17 H 0.171 0.829 18 O -0.322 6.322 19 C -0.078 4.078 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.087 4.087 24 C -0.155 4.155 25 C 0.436 3.564 26 F -0.158 7.158 27 F -0.161 7.161 28 F -0.109 7.109 29 H 0.086 0.914 30 H 0.205 0.795 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.235 0.765 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 19.329 -12.984 6.265 24.113 hybrid contribution 0.613 1.972 0.314 2.089 sum 19.942 -11.011 6.579 23.711 Atomic orbital electron populations 1.69617 1.05630 1.27676 1.48622 1.25022 0.95494 0.97985 0.97376 0.86693 0.79819 0.83986 0.79068 1.19434 1.19990 1.19444 1.19418 0.78654 0.96856 1.48515 0.85984 1.42028 1.07606 1.05644 1.66944 1.19138 0.86770 0.85263 0.85591 1.90633 1.68768 1.30439 1.52800 1.22838 0.95616 0.80295 1.03541 1.86673 1.21936 1.31250 1.82062 1.24308 0.82222 0.92718 0.73074 1.90662 1.60776 1.42163 1.45529 1.20631 0.84779 0.90591 0.95638 0.82891 1.86735 1.15380 1.74114 1.55988 1.19792 0.95024 0.97300 0.95647 1.20902 0.98697 1.00097 0.92810 1.21345 0.97647 0.95214 0.96261 1.21280 0.93800 0.98276 0.99566 1.21106 0.99359 0.97305 0.90954 1.19908 0.96152 1.03648 0.95743 1.18464 0.81166 0.75949 0.80828 1.93162 1.67061 1.67781 1.87825 1.93118 1.82398 1.86958 1.53646 1.93596 1.82024 1.42662 1.92590 0.91439 0.79508 0.89490 0.89323 0.76527 0.84691 0.84540 0.84364 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.55 10.16 -14.94 -0.15 -8.70 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.58 -13.77 5.09 -10.97 -0.06 -13.82 16 10 C 0.45 10.29 7.86 -10.99 -0.09 10.20 16 11 O -0.55 -14.68 15.42 -14.11 -0.22 -14.89 16 12 C 0.05 0.98 5.94 36.01 0.21 1.19 16 13 O -0.31 -5.43 6.57 -45.91 -0.30 -5.73 16 14 C 0.44 6.59 7.23 36.00 0.26 6.85 16 15 O -0.50 -8.01 16.06 -25.35 -0.41 -8.41 16 16 C 0.14 1.79 3.09 -29.03 -0.09 1.70 16 17 H 0.15 1.96 5.15 -51.93 -0.27 1.69 16 18 O -0.52 -5.59 12.86 -54.75 -0.70 -6.29 16 19 C -0.08 -0.86 4.96 -104.62 -0.52 -1.38 16 20 C -0.11 -0.91 9.33 -39.59 -0.37 -1.28 16 21 C -0.09 -0.60 10.05 -39.58 -0.40 -1.00 16 22 C -0.11 -0.81 10.05 -39.58 -0.40 -1.21 16 23 C -0.07 -0.66 9.43 -39.58 -0.37 -1.03 16 24 C -0.15 -1.82 5.38 -104.63 -0.56 -2.38 16 25 C 0.49 6.86 2.80 36.00 0.10 6.96 16 26 F -0.18 -2.43 15.99 2.25 0.04 -2.39 16 27 F -0.18 -2.39 14.97 2.25 0.03 -2.35 16 28 F -0.13 -2.29 12.93 2.25 0.03 -2.26 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 31 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16 32 H 0.09 1.41 8.13 -51.93 -0.42 0.98 16 33 H 0.38 2.94 7.03 45.56 0.32 3.26 16 34 H 0.14 0.81 6.60 -52.48 -0.35 0.47 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.14 1.20 7.17 -52.49 -0.38 0.82 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -34.50 333.87 -5.12 -39.62 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -2.15 Total: 10.54 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -2.47 Total: 11.04 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.72 Total: -38.27 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.63 Total: -35.33 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.10 Total: -7.00 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.50 -5.12 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885124015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -234.734 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds