Wall clock time and date at job start Wed Apr 1 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00033 * 2 1 4 4 C 1.52997 * 109.47158 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47165 * 64.99864 * 4 3 2 6 6 C 1.36938 * 119.99828 * 275.00027 * 5 4 3 7 7 H 1.07998 * 120.00034 * 4.42515 * 6 5 4 8 8 C 1.38813 * 119.99778 * 184.42133 * 6 5 4 9 9 N 1.31620 * 119.99984 * 32.18295 * 8 6 5 10 10 Si 1.86803 * 119.99889 * 212.18559 * 8 6 5 11 11 H 1.48498 * 109.47195 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47103 * 119.99859 * 10 8 6 13 13 H 1.48492 * 109.47013 * 239.99793 * 10 8 6 14 14 S 1.65597 * 119.99992 * 95.00013 * 5 4 3 15 15 O 1.42097 * 106.40190 * 351.34755 * 14 5 4 16 16 O 1.42100 * 106.40182 * 218.42421 * 14 5 4 17 17 C 1.76209 * 107.21688 * 104.88417 * 14 5 4 18 18 C 1.38244 * 119.98632 * 313.95358 * 17 14 5 19 19 C 1.50702 * 119.99149 * 0.02562 * 18 17 14 20 20 C 1.38209 * 120.01169 * 180.02562 * 18 17 14 21 21 C 1.38350 * 119.98612 * 359.97438 * 20 18 17 22 22 Cl 1.73602 * 120.01214 * 179.97438 * 21 20 18 23 23 C 1.38352 * 119.97564 * 0.02562 * 21 20 18 24 24 C 1.38211 * 119.98458 * 0.02562 * 23 21 20 25 25 C 1.50705 * 119.99409 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.47091 * 59.99868 * 1 2 3 27 27 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47189 * 300.00024 * 1 2 3 29 29 H 1.09002 * 109.47187 * 59.99551 * 3 2 1 30 30 H 1.09003 * 109.46702 * 300.00182 * 3 2 1 31 31 H 1.09001 * 109.46713 * 304.99868 * 4 3 2 32 32 H 1.09000 * 109.47290 * 185.00229 * 4 3 2 33 33 H 0.97003 * 119.99937 * 183.38775 * 9 8 6 34 34 H 1.09002 * 109.46885 * 285.68354 * 19 18 17 35 35 H 1.09001 * 109.47487 * 45.68211 * 19 18 17 36 36 H 1.09004 * 109.46556 * 165.68703 * 19 18 17 37 37 H 1.08003 * 120.00785 * 179.69880 * 20 18 17 38 38 H 1.07998 * 120.00806 * 179.97438 * 23 21 20 39 39 H 1.09002 * 109.47182 * 230.97283 * 25 24 23 40 40 H 1.09006 * 109.47086 * 350.96691 * 25 24 23 41 41 H 1.09001 * 109.47186 * 110.96658 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 3.9987 -0.7998 -1.3699 7 1 3.6254 -1.4172 -0.5663 8 6 4.5019 -1.3890 -2.5217 9 7 5.4775 -0.8070 -3.1864 10 14 3.7943 -3.0079 -3.1282 11 1 2.7142 -3.4509 -2.2104 12 1 3.2390 -2.8249 -4.4934 13 1 4.8666 -4.0345 -3.1635 14 16 4.4453 1.5129 -2.5263 15 8 4.1192 2.8499 -2.1725 16 8 3.9574 0.8785 -3.7004 17 6 6.2036 1.4361 -2.6132 18 6 6.9590 1.5763 -1.4640 19 6 6.2785 1.7941 -0.1371 20 6 8.3381 1.5166 -1.5316 21 6 8.9626 1.3161 -2.7498 22 17 10.6949 1.2417 -2.8357 23 6 8.2061 1.1758 -3.8996 24 6 6.8270 1.2367 -3.8308 25 6 6.0028 1.0846 -5.0833 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8514 0.5682 0.8410 32 1 3.9785 2.1765 0.0890 33 1 5.7958 -1.1929 -4.0175 34 1 5.9021 2.8158 -0.0853 35 1 5.4481 1.0954 -0.0355 36 1 6.9932 1.6289 0.6692 37 1 8.9284 1.6310 -0.6345 38 1 8.6930 1.0197 -4.8509 39 1 5.2919 1.9080 -5.1527 40 1 6.6588 1.0967 -5.9537 41 1 5.4615 0.1391 -5.0494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886407440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:22 Heat of formation + Delta-G solvation = -46.533455 kcal Electronic energy + Delta-G solvation = -28725.773619 eV Core-core repulsion = 24761.270078 eV Total energy + Delta-G solvation = -3964.503541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.079 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -38.81988 -37.66685 -36.17649 -36.06975 -35.63389 -34.46710 -32.81063 -31.88119 -31.04377 -28.75652 -26.82828 -26.12717 -25.85835 -24.36898 -22.03228 -21.75157 -20.15680 -19.09364 -17.37782 -16.37972 -16.10170 -15.79055 -15.49009 -15.33456 -15.03598 -14.81356 -14.49778 -14.04019 -13.51794 -13.42245 -13.24175 -12.69255 -12.45141 -12.34115 -12.24201 -12.07345 -12.03493 -11.88465 -11.63677 -11.48267 -11.13490 -11.05099 -10.98675 -10.81335 -10.73633 -10.45380 -10.39012 -10.30800 -10.20871 -10.15568 -9.84534 -9.38350 -9.20538 -9.12367 -8.17466 -7.90967 -7.83380 -6.31562 -3.77251 1.63988 1.99570 2.08112 2.56908 3.28957 3.40910 3.43029 4.06933 4.21610 4.30154 4.59634 4.93107 5.13984 5.29323 5.43696 5.48897 5.59233 5.64611 5.71354 5.80537 5.81579 5.82097 5.93922 5.94925 6.03861 6.09450 6.16662 6.20639 6.37618 6.39346 6.44651 6.53460 6.68842 6.82745 6.91181 6.96263 7.16175 7.30120 7.58344 7.64674 7.70772 8.32682 8.87195 9.27995 10.54882 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.005233 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.154373 B = 5349.483715 C = 6097.108674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.050 3.950 4 C 0.112 3.888 5 N -0.840 5.840 6 C -0.259 4.259 7 H 0.107 0.893 8 C 0.021 3.979 9 N -0.862 5.862 10 Si 0.929 3.071 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.290 1.290 14 S 2.655 3.345 15 O -1.026 7.026 16 O -0.942 6.942 17 C -0.553 4.553 18 C 0.004 3.996 19 C -0.173 4.173 20 C -0.146 4.146 21 C -0.004 4.004 22 Cl -0.098 7.098 23 C -0.153 4.153 24 C 0.066 3.934 25 C -0.127 4.127 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.284 0.716 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 3.311 3.839 5.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.029 4.029 4 C -0.015 4.015 5 N -0.668 5.668 6 C -0.396 4.396 7 H 0.125 0.875 8 C -0.183 4.183 9 N -0.507 5.507 10 Si 0.756 3.244 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.217 1.217 14 S 2.748 3.252 15 O -1.015 7.015 16 O -0.932 6.932 17 C -0.636 4.636 18 C 0.002 3.998 19 C -0.229 4.229 20 C -0.166 4.166 21 C -0.031 4.031 22 Cl -0.070 7.070 23 C -0.173 4.173 24 C 0.064 3.936 25 C -0.184 4.184 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.140 3.642 3.137 4.809 hybrid contribution 0.809 -0.906 -0.137 1.222 sum 0.669 2.736 3.001 4.116 Atomic orbital electron populations 1.22678 0.82871 1.02086 0.99067 1.88087 1.17892 1.27189 1.95094 1.23053 0.95407 0.84988 0.99416 1.21452 0.91916 0.98728 0.89387 1.54317 1.69984 1.15596 1.26914 1.19317 1.36932 0.80017 1.03288 0.87486 1.25044 0.95340 1.00908 0.97056 1.69923 1.20816 1.42657 1.17323 0.85824 0.78942 0.80306 0.79309 1.19522 1.20405 1.21688 1.04679 0.74816 0.71157 0.74510 1.93391 1.84941 1.38544 1.84659 1.93464 1.78367 1.75394 1.45977 1.30933 1.29052 1.06703 0.96927 1.19102 0.92366 0.94264 0.94050 1.21918 1.03438 1.03524 0.94028 1.20672 0.94300 1.05900 0.95717 1.20765 0.82423 1.04253 0.95640 1.98310 1.12837 1.97028 1.98783 1.20763 0.93555 1.06363 0.96637 1.19067 0.91890 0.88371 0.94262 1.21449 0.98324 1.06287 0.92352 0.94577 0.90190 0.95056 0.93491 0.93556 0.90545 0.89077 0.90145 0.90412 0.87089 0.91340 0.86225 0.86174 0.92176 0.93769 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.59 9.84 -35.23 -0.35 -6.94 16 3 C 0.05 0.86 6.28 37.16 0.23 1.09 16 4 C 0.11 2.02 3.66 -4.04 -0.01 2.01 16 5 N -0.84 -18.46 1.66 -59.91 -0.10 -18.56 16 6 C -0.26 -6.10 8.88 -15.06 -0.13 -6.23 16 7 H 0.11 2.48 7.89 -52.49 -0.41 2.07 16 8 C 0.02 0.51 4.15 -17.43 -0.07 0.43 16 9 N -0.86 -21.01 5.48 55.49 0.30 -20.70 16 10 Si 0.93 20.45 29.66 -169.99 -5.04 15.41 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 14 S 2.65 62.31 4.10 -107.50 -0.44 61.87 16 15 O -1.03 -24.57 16.45 -57.17 -0.94 -25.51 16 16 O -0.94 -24.01 11.20 -57.17 -0.64 -24.65 16 17 C -0.55 -12.36 4.05 -39.58 -0.16 -12.52 16 18 C 0.00 0.09 5.88 -104.63 -0.62 -0.53 16 19 C -0.17 -3.03 7.96 36.01 0.29 -2.74 16 20 C -0.15 -2.78 9.45 -39.55 -0.37 -3.15 16 21 C 0.00 -0.08 6.32 -39.50 -0.25 -0.33 16 22 Cl -0.10 -1.57 28.96 -51.86 -1.50 -3.07 16 23 C -0.15 -2.99 9.45 -39.55 -0.37 -3.36 16 24 C 0.07 1.41 4.42 -104.63 -0.46 0.94 16 25 C -0.13 -2.59 7.98 36.01 0.29 -2.31 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.26 7.77 -51.93 -0.40 0.85 16 32 H 0.09 1.52 5.32 -51.93 -0.28 1.25 16 33 H 0.28 6.79 6.63 -40.82 -0.27 6.52 16 34 H 0.08 1.28 7.56 -51.93 -0.39 0.89 16 35 H 0.11 2.04 2.93 -51.93 -0.15 1.89 16 36 H 0.07 1.01 7.95 -51.93 -0.41 0.60 16 37 H 0.12 1.97 8.00 -52.48 -0.42 1.55 16 38 H 0.12 2.06 7.97 -52.49 -0.42 1.64 16 39 H 0.06 1.23 7.14 -51.93 -0.37 0.86 16 40 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 41 H 0.12 2.75 4.48 -51.93 -0.23 2.52 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -28.17 340.41 -9.20 -37.36 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.08 Total: 4.82 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -0.54 Total: -25.17 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.20 Total: -39.26 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -1.93 Total: -57.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.41 kcal Atomic # 16 Polarization: 62.31 SS G_CDS: -0.44 Total: 61.87 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.17 -9.20 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886407440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.170 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds