Wall clock time and date at job start Wed Apr 1 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40241 * 336.45887 * 4 2 1 6 6 O 1.42096 * 106.40379 * 203.53509 * 4 2 1 7 7 C 1.76199 * 107.21658 * 89.99803 * 4 2 1 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 2 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00032 * 0.48826 * 9 8 7 11 11 C 1.50706 * 120.00191 * 179.77047 * 10 9 8 12 12 S 1.81398 * 109.46767 * 270.02148 * 11 10 9 13 13 O 1.42094 * 108.57820 * 294.48486 * 12 11 10 14 14 O 1.42103 * 108.58176 * 65.51002 * 12 11 10 15 15 C 1.81400 * 101.92253 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.47611 * 179.97438 * 15 12 11 17 17 H 1.08006 * 119.99445 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00139 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00061 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46736 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46962 * 120.00034 * 20 18 16 23 23 H 1.48497 * 109.47190 * 240.00068 * 20 18 16 24 24 C 1.38230 * 119.99845 * 359.78460 * 10 9 8 25 25 C 1.38234 * 120.00019 * 90.00010 * 7 4 2 26 26 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 27 27 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 28 28 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 29 29 H 1.09004 * 109.46955 * 270.00024 * 3 2 1 30 30 H 1.09003 * 109.47115 * 30.00071 * 3 2 1 31 31 H 1.08994 * 109.47486 * 150.00176 * 3 2 1 32 32 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 33 33 H 1.08004 * 120.00400 * 180.25458 * 9 8 7 34 34 H 1.09000 * 109.47114 * 30.01506 * 11 10 9 35 35 H 1.08992 * 109.47323 * 150.02185 * 11 10 9 36 36 H 1.09003 * 109.46896 * 300.00186 * 15 12 11 37 37 H 1.09002 * 109.47318 * 59.99546 * 15 12 11 38 38 H 0.97004 * 120.00235 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99901 * 179.97438 * 24 10 9 40 40 H 1.07999 * 120.00005 * 0.02562 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5455 6 8 3.5760 -1.1564 0.5448 7 6 2.5538 -1.8865 -1.6822 8 6 1.6221 -2.6673 -2.3404 9 6 1.8243 -3.0182 -3.6620 10 6 2.9631 -2.5967 -4.3226 11 6 3.1861 -2.9836 -5.7620 12 16 4.0924 -4.5534 -5.8326 13 8 5.3911 -4.3510 -5.2927 14 8 3.2680 -5.5769 -5.2921 15 6 4.2440 -4.8184 -7.6208 16 6 4.9870 -6.1042 -7.8769 17 1 5.3330 -6.7025 -7.0469 18 6 5.2241 -6.5174 -9.1707 19 7 4.8024 -5.7892 -10.1813 20 14 6.1444 -8.1117 -9.4882 21 1 6.5079 -8.7398 -8.1925 22 1 5.2782 -9.0378 -10.2609 23 1 7.3782 -7.8252 -10.2633 24 6 3.8975 -1.8206 -3.6628 25 6 3.6928 -1.4653 -2.3426 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3791 1.5834 -1.0277 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 0.7341 -2.9997 -1.8232 33 1 1.0944 -3.6248 -4.1775 34 1 2.2237 -3.0969 -6.2610 35 1 3.7652 -2.2069 -6.2614 36 1 3.2503 -4.8778 -8.0648 37 1 4.7918 -3.9878 -8.0660 38 1 4.9695 -6.0797 -11.0916 39 1 4.7875 -1.4917 -4.1787 40 1 4.4231 -0.8593 -1.8270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:11 Heat of formation + Delta-G solvation = -115.909512 kcal Electronic energy + Delta-G solvation = -25817.171471 eV Core-core repulsion = 21851.703265 eV Total energy + Delta-G solvation = -3965.468206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.54817 -37.53775 -36.53618 -36.15369 -36.07256 -35.20322 -33.43693 -33.34220 -31.25889 -29.21789 -28.51928 -27.78284 -25.05719 -23.68058 -23.09107 -22.15878 -19.37497 -18.33860 -18.14451 -17.66839 -17.04843 -16.58471 -16.07514 -15.84108 -15.79987 -15.11495 -15.05399 -15.02761 -14.55684 -14.45466 -14.12402 -13.74980 -13.56340 -13.14658 -13.01053 -12.71861 -12.65201 -12.60549 -12.44777 -12.29322 -12.24184 -12.00994 -11.89175 -11.46622 -11.41272 -11.24858 -11.19863 -11.14682 -10.97699 -10.79808 -10.60570 -9.86162 -9.53842 -9.42327 -9.22381 -8.96842 -8.78260 -6.40436 -4.50263 0.04353 0.38022 0.96422 1.12605 2.61078 3.16890 3.24230 3.28846 3.31988 3.51056 3.63166 4.00045 4.07558 4.22750 4.36917 4.38642 4.68467 4.68657 4.70862 4.88390 4.94734 4.97163 5.12783 5.17268 5.19668 5.33725 5.35385 5.37442 5.39301 5.50846 5.60019 5.74972 5.85577 5.94337 6.08757 6.23024 6.52266 6.57827 6.62399 7.40866 7.66698 8.51965 9.17604 10.71382 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.031922 B = 0.002323 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.927569 B =12049.955296 C =12110.160098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.007 6.007 3 C 0.082 3.918 4 S 2.696 3.304 5 O -0.953 6.953 6 O -0.954 6.954 7 C -0.683 4.683 8 C -0.019 4.019 9 C -0.129 4.129 10 C -0.016 4.016 11 C -0.604 4.604 12 S 2.388 3.612 13 O -0.948 6.948 14 O -0.948 6.948 15 C -0.398 4.398 16 C -0.530 4.530 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.881 5.881 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.129 4.129 25 C -0.018 4.018 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.269 0.731 39 H 0.142 0.858 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 16.660 14.876 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.846 5.846 3 C -0.064 4.064 4 S 2.786 3.214 5 O -0.943 6.943 6 O -0.944 6.944 7 C -0.770 4.770 8 C -0.039 4.039 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.726 4.726 12 S 2.573 3.427 13 O -0.945 6.945 14 O -0.945 6.945 15 C -0.534 4.534 16 C -0.569 4.569 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.518 5.518 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.148 4.148 25 C -0.037 4.037 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.160 0.840 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.059 15.786 16.168 24.345 hybrid contribution 0.013 -0.055 -1.939 1.940 sum -9.046 15.731 14.229 23.060 Atomic orbital electron populations 1.21524 0.77902 1.03389 1.02485 1.57345 1.15432 1.21755 1.90073 1.21646 0.97435 0.84938 1.02342 1.01936 0.73158 0.72326 0.73957 1.93585 1.66068 1.58275 1.76363 1.93571 1.39995 1.84337 1.76500 1.30926 1.04825 1.14736 1.26554 1.20876 0.97009 0.92022 0.93944 1.21332 0.97831 1.00546 0.95109 1.19465 0.94400 0.94789 0.93046 1.29849 1.17069 1.26489 0.99159 1.09310 0.75429 0.75570 0.82409 1.93488 1.36785 1.85100 1.79110 1.93489 1.69807 1.52089 1.79104 1.27513 1.06758 1.06688 1.12395 1.20400 1.38229 1.04396 0.93900 0.90847 1.24936 0.94913 0.97822 0.95431 1.69947 1.44575 1.38131 0.99124 0.86276 0.79411 0.82053 0.79006 1.18900 1.20291 1.20285 1.21334 0.99628 0.98710 0.95147 1.20874 0.94007 0.94953 0.93911 0.92054 0.90762 0.90835 0.92483 0.90420 0.89674 0.83914 0.84014 0.83946 0.83946 0.89548 0.89548 0.92173 0.84012 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.29 59.85 0.62 1.15 16 2 N -1.01 -7.84 3.58 -129.20 -0.46 -8.31 16 3 C 0.08 0.47 10.66 59.85 0.64 1.11 16 4 S 2.70 30.36 5.65 -107.50 -0.61 29.75 16 5 O -0.95 -12.85 16.35 -57.17 -0.93 -13.79 16 6 O -0.95 -12.78 15.88 -57.17 -0.91 -13.69 16 7 C -0.68 -8.35 5.97 -39.58 -0.24 -8.59 16 8 C -0.02 -0.24 9.52 -39.58 -0.38 -0.61 16 9 C -0.13 -1.74 9.70 -39.59 -0.38 -2.12 16 10 C -0.02 -0.23 5.14 -104.62 -0.54 -0.76 16 11 C -0.60 -8.42 5.93 36.01 0.21 -8.20 16 12 S 2.39 47.53 4.62 -107.50 -0.50 47.04 16 13 O -0.95 -21.45 18.10 -57.83 -1.05 -22.50 16 14 O -0.95 -21.46 18.10 -57.83 -1.05 -22.50 16 15 C -0.40 -9.03 5.56 36.01 0.20 -8.83 16 16 C -0.53 -14.35 9.13 -34.44 -0.31 -14.66 16 17 H 0.07 1.99 7.71 -52.48 -0.40 1.59 16 18 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 19 N -0.88 -24.24 13.29 55.43 0.74 -23.50 16 20 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.13 -1.74 9.70 -39.59 -0.38 -2.12 16 25 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.27 8.07 -51.93 -0.42 -0.14 16 28 H 0.07 0.41 7.79 -51.93 -0.40 0.01 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.08 0.53 7.02 -51.93 -0.36 0.17 16 32 H 0.14 1.41 7.61 -52.48 -0.40 1.01 16 33 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.14 1.60 8.09 -51.92 -0.42 1.18 16 35 H 0.14 1.60 8.08 -51.93 -0.42 1.18 16 36 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 37 H 0.09 1.89 8.14 -51.92 -0.42 1.46 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.14 1.42 7.62 -52.49 -0.40 1.02 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -37.58 370.08 -10.57 -48.15 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.32 Total: 0.36 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: -1.04 Total: -42.33 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.27 Total: -31.81 kcal Atomic # 8 Polarization: -68.54 SS G_CDS: -3.94 Total: -72.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 77.89 SS G_CDS: -1.10 Total: 76.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.58 -10.57 -48.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.758 kcal (2) G-P(sol) polarization free energy of solvation -37.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds