Wall clock time and date at job start Wed Apr 1 2020 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 119.99936 * 2 1 4 4 S 1.65599 * 120.00337 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40241 * 336.45887 * 4 2 1 6 6 O 1.42096 * 106.40379 * 203.53509 * 4 2 1 7 7 C 1.76199 * 107.21658 * 89.99803 * 4 2 1 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 2 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00032 * 0.48826 * 9 8 7 11 11 C 1.50706 * 120.00191 * 179.77047 * 10 9 8 12 12 S 1.81398 * 109.46767 * 270.02148 * 11 10 9 13 13 O 1.42094 * 108.57820 * 294.48486 * 12 11 10 14 14 O 1.42103 * 108.58176 * 65.51002 * 12 11 10 15 15 C 1.81400 * 101.92253 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.47611 * 179.97438 * 15 12 11 17 17 H 1.08006 * 119.99445 * 0.02562 * 16 15 12 18 18 C 1.37872 * 120.00139 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00061 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46736 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46962 * 120.00034 * 20 18 16 23 23 H 1.48497 * 109.47190 * 240.00068 * 20 18 16 24 24 C 1.38230 * 119.99845 * 359.78460 * 10 9 8 25 25 C 1.38234 * 120.00019 * 90.00010 * 7 4 2 26 26 H 1.09004 * 109.46766 * 269.99933 * 1 2 3 27 27 H 1.09001 * 109.47517 * 29.99808 * 1 2 3 28 28 H 1.08997 * 109.47269 * 150.00341 * 1 2 3 29 29 H 1.09004 * 109.46955 * 270.00024 * 3 2 1 30 30 H 1.09003 * 109.47115 * 30.00071 * 3 2 1 31 31 H 1.08994 * 109.47486 * 150.00176 * 3 2 1 32 32 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 33 33 H 1.08004 * 120.00400 * 180.25458 * 9 8 7 34 34 H 1.09000 * 109.47114 * 30.01506 * 11 10 9 35 35 H 1.08992 * 109.47323 * 150.02185 * 11 10 9 36 36 H 1.09003 * 109.46896 * 300.00186 * 15 12 11 37 37 H 1.09002 * 109.47318 * 59.99546 * 15 12 11 38 38 H 0.97004 * 120.00235 * 179.97438 * 19 18 16 39 39 H 1.08005 * 119.99901 * 179.97438 * 24 10 9 40 40 H 1.07999 * 120.00005 * 0.02562 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 0.0006 5 8 1.4115 -2.4063 0.5455 6 8 3.5760 -1.1564 0.5448 7 6 2.5538 -1.8865 -1.6822 8 6 1.6221 -2.6673 -2.3404 9 6 1.8243 -3.0182 -3.6620 10 6 2.9631 -2.5967 -4.3226 11 6 3.1861 -2.9836 -5.7620 12 16 4.0924 -4.5534 -5.8326 13 8 5.3911 -4.3510 -5.2927 14 8 3.2680 -5.5769 -5.2921 15 6 4.2440 -4.8184 -7.6208 16 6 4.9870 -6.1042 -7.8769 17 1 5.3330 -6.7025 -7.0469 18 6 5.2241 -6.5174 -9.1707 19 7 4.8024 -5.7892 -10.1813 20 14 6.1444 -8.1117 -9.4882 21 1 6.5079 -8.7398 -8.1925 22 1 5.2782 -9.0378 -10.2609 23 1 7.3782 -7.8252 -10.2633 24 6 3.8975 -1.8206 -3.6628 25 6 3.6928 -1.4653 -2.3426 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3791 1.5834 -1.0277 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 0.7341 -2.9997 -1.8232 33 1 1.0944 -3.6248 -4.1775 34 1 2.2237 -3.0969 -6.2610 35 1 3.7652 -2.2069 -6.2614 36 1 3.2503 -4.8778 -8.0648 37 1 4.7918 -3.9878 -8.0660 38 1 4.9695 -6.0797 -11.0916 39 1 4.7875 -1.4917 -4.1787 40 1 4.4231 -0.8593 -1.8270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:10 Heat of formation + Delta-G solvation = -145.058357 kcal Electronic energy + Delta-G solvation = -25818.435460 eV Core-core repulsion = 21851.703265 eV Total energy + Delta-G solvation = -3966.732195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.52502 -38.49500 -37.84110 -37.15469 -36.97107 -36.88503 -35.41246 -34.40675 -32.21570 -31.08894 -28.95780 -28.91574 -25.64398 -25.52831 -24.05420 -23.23562 -20.21405 -19.79436 -19.12882 -18.94423 -18.47088 -17.63784 -17.47958 -17.23991 -16.95286 -16.53111 -16.28028 -15.92467 -15.76581 -15.35325 -15.18665 -14.67321 -14.52199 -14.33809 -14.04794 -14.02273 -13.73152 -13.54518 -13.52623 -13.38162 -13.35153 -13.24859 -13.00417 -12.92200 -12.75414 -12.64375 -12.59462 -12.55760 -12.31142 -12.24077 -11.93915 -11.75101 -11.07982 -10.79015 -10.23241 -10.18854 -10.03074 -8.43167 -6.58679 -1.04349 -0.74268 -0.22540 0.15488 1.35437 1.36887 1.50570 1.84508 2.09343 2.29081 2.33494 2.62939 2.81163 2.90583 3.13555 3.19582 3.34626 3.61264 3.79800 3.86400 4.00844 4.18208 4.31542 4.41160 4.52223 4.57417 4.59863 4.75863 4.76061 4.79191 4.82223 4.91586 4.94424 4.97485 5.00134 5.05719 5.21793 5.35343 5.54530 5.66312 5.73599 6.50885 7.12015 8.69301 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.031922 B = 0.002323 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.927569 B =12049.955296 C =12110.160098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.000 6.000 3 C 0.072 3.928 4 S 2.710 3.290 5 O -0.978 6.978 6 O -0.979 6.979 7 C -0.683 4.683 8 C -0.028 4.028 9 C -0.139 4.139 10 C -0.045 4.045 11 C -0.567 4.567 12 S 2.402 3.598 13 O -0.984 6.984 14 O -0.984 6.984 15 C -0.420 4.420 16 C -0.563 4.563 17 H 0.057 0.943 18 C 0.027 3.973 19 N -0.907 5.907 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.266 1.266 23 H -0.265 1.265 24 C -0.139 4.139 25 C -0.027 4.027 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.274 0.726 39 H 0.156 0.844 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 18.529 15.345 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.841 5.841 3 C -0.073 4.073 4 S 2.800 3.200 5 O -0.968 6.968 6 O -0.969 6.969 7 C -0.770 4.770 8 C -0.047 4.047 9 C -0.158 4.158 10 C -0.047 4.047 11 C -0.695 4.695 12 S 2.592 3.408 13 O -0.981 6.981 14 O -0.982 6.982 15 C -0.553 4.553 16 C -0.601 4.601 17 H 0.076 0.924 18 C -0.176 4.176 19 N -0.544 5.544 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.190 1.190 23 H -0.190 1.190 24 C -0.159 4.159 25 C -0.046 4.046 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.194 0.806 35 H 0.194 0.806 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.174 0.826 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.115 17.577 16.588 26.200 hybrid contribution 0.243 -0.441 -1.941 2.005 sum -9.872 17.136 14.647 24.610 Atomic orbital electron populations 1.21812 0.76426 1.04762 1.03435 1.57125 1.16266 1.21058 1.89645 1.21903 0.97433 0.84350 1.03575 1.01365 0.72527 0.72698 0.73391 1.93547 1.66484 1.59993 1.76808 1.93534 1.41552 1.84863 1.76931 1.31186 1.04691 1.14170 1.26932 1.21191 0.97849 0.91805 0.93824 1.21645 0.98041 1.00447 0.95716 1.19612 0.95498 0.96412 0.93131 1.29440 1.17898 1.21716 1.00486 1.08387 0.75059 0.77392 0.79960 1.93436 1.39546 1.86461 1.78704 1.93437 1.70159 1.55858 1.78698 1.27597 1.06309 1.05021 1.16391 1.20773 1.39093 1.06342 0.93918 0.92448 1.25737 0.95682 1.00832 0.95370 1.69993 1.45415 1.39462 0.99507 0.85488 0.78854 0.78723 0.78792 1.19321 1.19043 1.19027 1.21647 0.99908 0.98551 0.95753 1.21185 0.94482 0.95109 0.93787 0.91411 0.88158 0.90780 0.91135 0.87906 0.90464 0.81930 0.82624 0.80587 0.80590 0.89186 0.89187 0.91669 0.82628 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.29 127.77 1.31 2.03 16 2 N -1.00 -13.28 3.58 -562.68 -2.02 -15.30 16 3 C 0.07 0.63 10.66 127.77 1.36 2.00 16 4 S 2.71 57.47 5.65 -56.49 -0.32 57.15 16 5 O -0.98 -25.44 16.35 -128.00 -2.09 -27.53 16 6 O -0.98 -25.34 15.88 -128.00 -2.03 -27.38 16 7 C -0.68 -15.60 5.97 22.27 0.13 -15.46 16 8 C -0.03 -0.63 9.52 22.27 0.21 -0.42 16 9 C -0.14 -3.47 9.70 22.27 0.22 -3.26 16 10 C -0.05 -1.20 5.14 -19.87 -0.10 -1.30 16 11 C -0.57 -14.37 5.93 71.24 0.42 -13.95 16 12 S 2.40 95.55 4.62 -56.49 -0.26 95.29 16 13 O -0.98 -45.16 18.10 -127.37 -2.30 -47.46 16 14 O -0.98 -45.16 18.10 -127.37 -2.30 -47.46 16 15 C -0.42 -19.35 5.56 71.24 0.40 -18.95 16 16 C -0.56 -31.28 9.13 25.60 0.23 -31.04 16 17 H 0.06 3.26 7.71 -2.91 -0.02 3.23 16 18 C 0.03 1.47 5.46 84.65 0.46 1.93 16 19 N -0.91 -50.22 13.29 21.44 0.28 -49.93 16 20 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.14 -3.48 9.70 22.27 0.22 -3.26 16 25 C -0.03 -0.61 9.52 22.27 0.21 -0.40 16 26 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.10 0.38 8.07 -2.39 -0.02 0.37 16 28 H 0.07 0.66 7.79 -2.39 -0.02 0.64 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16 31 H 0.08 0.83 7.02 -2.39 -0.02 0.81 16 32 H 0.16 2.93 7.61 -2.91 -0.02 2.91 16 33 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.18 3.33 8.09 -2.39 -0.02 3.32 16 35 H 0.18 3.33 8.08 -2.39 -0.02 3.32 16 36 H 0.09 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.09 3.98 8.14 -2.39 -0.02 3.96 16 38 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.16 2.94 7.62 -2.91 -0.02 2.92 16 Total: -1.00 -82.78 370.08 -2.90 -85.68 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.05 Total: 14.23 kcal Atomic # 6 Polarization: -87.17 SS G_CDS: 5.08 Total: -82.10 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -1.73 Total: -65.23 kcal Atomic # 8 Polarization: -141.10 SS G_CDS: -8.74 Total: -149.83 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 153.02 SS G_CDS: -0.58 Total: 152.44 kcal Total: -82.78 -2.90 -85.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.380 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds