Wall clock time and date at job start Wed Apr 1 2020 04:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47025 * 2 1 4 4 N 1.46501 * 109.47069 * 120.00116 * 2 1 3 5 5 S 1.65608 * 120.00079 * 264.99907 * 4 2 1 6 6 O 1.42099 * 106.40241 * 178.54028 * 5 4 2 7 7 O 1.42097 * 106.39895 * 311.46103 * 5 4 2 8 8 C 1.76196 * 107.21621 * 65.00284 * 5 4 2 9 9 C 1.33387 * 125.20869 * 89.99649 * 8 5 4 10 10 C 1.38421 * 114.92814 * 179.97438 * 9 8 5 11 11 C 1.33388 * 114.91859 * 0.02562 * 10 9 8 12 12 S 1.75891 * 109.59526 * 359.75642 * 11 10 9 13 13 C 1.50701 * 109.47260 * 240.00079 * 2 1 3 14 14 O 1.20826 * 119.99989 * 239.99993 * 13 2 1 15 15 O 1.34230 * 119.99890 * 59.99865 * 13 2 1 16 16 C 1.45196 * 117.00171 * 179.97438 * 15 13 2 17 17 C 1.52998 * 109.47142 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46908 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.47143 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99698 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00114 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00205 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47130 * 59.99636 * 23 21 19 25 25 H 1.48496 * 109.47478 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46986 * 299.99773 * 23 21 19 27 27 H 1.08998 * 109.46988 * 59.99914 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99674 * 1 2 3 30 30 H 0.97002 * 120.00027 * 85.00418 * 4 2 1 31 31 H 1.08007 * 122.53430 * 359.95981 * 9 8 5 32 32 H 1.07991 * 122.54042 * 180.02562 * 10 9 8 33 33 H 1.08002 * 125.20616 * 180.02562 * 11 10 9 34 34 H 1.08997 * 109.47525 * 300.00781 * 16 15 13 35 35 H 1.09007 * 109.46589 * 60.00339 * 16 15 13 36 36 H 1.09001 * 109.47516 * 300.00154 * 17 16 15 37 37 H 1.08999 * 109.46651 * 60.00670 * 17 16 15 38 38 H 1.08999 * 109.47432 * 300.00232 * 18 17 16 39 39 H 1.08998 * 109.47469 * 60.00247 * 18 17 16 40 40 H 0.96995 * 120.00514 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4122 0.1771 2.5506 6 8 2.8124 -0.7698 3.5315 7 8 3.2437 1.2442 2.1156 8 6 0.9275 0.9146 3.1475 9 6 0.0914 0.3582 4.0254 10 6 -1.0133 1.1276 4.3473 11 6 -1.0747 2.3087 3.7304 12 16 0.3245 2.5000 2.6819 13 6 2.0324 -0.7104 -1.2305 14 8 2.7270 -1.6928 -1.1196 15 8 1.7081 -0.2518 -2.4496 16 6 2.2277 -0.9856 -3.5897 17 6 1.7555 -0.3191 -4.8834 18 6 2.3026 -1.0927 -6.0847 19 6 1.8380 -0.4359 -7.3590 20 1 1.2146 0.4450 -7.3163 21 6 2.2080 -0.9601 -8.5794 22 7 2.9668 -2.0330 -8.6314 23 14 1.6316 -0.1464 -10.1589 24 1 2.1271 1.2528 -10.2043 25 1 2.1626 -0.8971 -11.3249 26 1 0.1472 -0.1476 -10.2032 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.1110 -1.6562 1.1948 31 1 0.2634 -0.6188 4.4525 32 1 -1.7682 0.7967 5.0450 33 1 -1.8609 3.0380 3.8586 34 1 3.3172 -0.9845 -3.5566 35 1 1.8642 -2.0127 -3.5569 36 1 0.6660 -0.3206 -4.9163 37 1 2.1187 0.7081 -4.9163 38 1 3.3921 -1.0916 -6.0520 39 1 1.9392 -2.1198 -6.0515 40 1 3.2268 -2.4021 -9.4899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915021191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:52 Heat of formation + Delta-G solvation = -160.582636 kcal Electronic energy + Delta-G solvation = -25277.104592 eV Core-core repulsion = 21309.699214 eV Total energy + Delta-G solvation = -3967.405378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73431 -38.88273 -38.48850 -38.18561 -37.16937 -36.75674 -35.93831 -33.69013 -31.30115 -30.87424 -29.00691 -26.20645 -25.41866 -24.77224 -22.16925 -22.02956 -21.58932 -20.32563 -19.90967 -19.16425 -18.70356 -18.09788 -17.94368 -17.69986 -16.97713 -16.60819 -16.48507 -16.05235 -15.73791 -15.58476 -14.80749 -14.58896 -14.43773 -14.11808 -13.88475 -13.78410 -13.76142 -13.57297 -13.48309 -13.36699 -13.30297 -13.12438 -12.79541 -12.77305 -12.59999 -12.52931 -12.37017 -12.07949 -11.84334 -11.78846 -11.44813 -11.40793 -11.26034 -10.96059 -10.55504 -10.35451 -9.54847 -8.20520 -6.32001 -0.93715 -0.48947 0.38718 0.83294 0.99618 1.35628 1.43041 1.45826 1.53277 1.55250 1.90951 2.42414 2.52995 3.13454 3.24796 3.32842 3.75605 3.83250 4.01677 4.04945 4.05700 4.09963 4.34203 4.42093 4.43516 4.65830 4.81583 4.83571 4.87867 4.91039 5.06219 5.09427 5.18485 5.32219 5.35608 5.51390 5.65528 5.72639 5.81602 6.20042 6.54769 6.84114 7.37540 8.91410 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.021921 B = 0.001998 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.024109 B =14010.066126 C =14741.464250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.160 3.840 3 H 0.142 0.858 4 N -1.099 6.099 5 S 2.738 3.262 6 O -0.971 6.971 7 O -0.980 6.980 8 C -0.817 4.817 9 C 0.020 3.980 10 C -0.171 4.171 11 C -0.150 4.150 12 S 0.196 5.804 13 C 0.457 3.543 14 O -0.529 6.529 15 O -0.346 6.346 16 C 0.076 3.924 17 C -0.093 4.093 18 C 0.025 3.975 19 C -0.542 4.542 20 H 0.067 0.933 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.264 1.264 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.431 0.569 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.205 0.795 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.068 0.932 38 H -0.005 1.005 39 H -0.003 1.003 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 9.264 30.069 33.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.051 3.949 3 H 0.160 0.840 4 N -0.861 5.861 5 S 2.828 3.172 6 O -0.962 6.962 7 O -0.970 6.970 8 C -1.022 5.022 9 C -0.017 4.017 10 C -0.201 4.201 11 C -0.288 4.288 12 S 0.461 5.539 13 C 0.299 3.701 14 O -0.418 6.418 15 O -0.262 6.262 16 C 0.003 3.997 17 C -0.131 4.131 18 C -0.012 4.012 19 C -0.580 4.580 20 H 0.085 0.915 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.269 0.731 31 H 0.184 0.816 32 H 0.196 0.804 33 H 0.222 0.778 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.162 10.289 29.295 32.995 hybrid contribution -0.680 -1.648 -0.143 1.788 sum -11.843 8.642 29.152 32.631 Atomic orbital electron populations 1.22404 0.89221 1.05156 1.05889 1.20482 0.98013 0.96861 0.79516 0.84050 1.55375 1.84068 1.21159 1.25522 1.00284 0.72798 0.72420 0.71670 1.93580 1.81138 1.62499 1.58946 1.93585 1.64612 1.56943 1.81847 1.35380 1.29793 1.13740 1.23272 1.20430 0.90444 1.00670 0.90125 1.20742 1.00323 0.94551 1.04492 1.26726 1.01314 1.01770 0.99018 1.84554 1.15874 1.10555 1.42896 1.24146 0.77139 0.82957 0.85882 1.90660 1.36428 1.27232 1.87506 1.86460 1.69274 1.55683 1.14766 1.23209 0.98542 0.95404 0.82586 1.21460 1.01480 0.99868 0.90299 1.18941 0.95066 0.94878 0.92351 1.21602 1.31799 1.12815 0.91780 0.91504 1.26019 0.95126 0.95574 1.03317 1.70094 1.37427 1.23355 1.26571 0.85446 0.79006 0.78578 0.77694 1.19088 1.21133 1.18903 0.88253 0.90434 0.88946 0.73066 0.81588 0.80428 0.77762 0.92054 0.91489 0.90973 0.91370 0.98705 0.98446 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.45 71.98 0.68 -1.46 16 2 C 0.16 3.02 3.42 44.25 0.15 3.17 16 3 H 0.14 2.33 7.50 -2.39 -0.02 2.31 16 4 N -1.10 -20.41 5.26 -172.51 -0.91 -21.32 16 5 S 2.74 54.91 5.86 -56.49 -0.33 54.58 16 6 O -0.97 -23.88 17.80 -128.00 -2.28 -26.16 16 7 O -0.98 -25.55 17.24 -128.00 -2.21 -27.75 16 8 C -0.82 -11.60 5.54 66.72 0.37 -11.23 16 9 C 0.02 0.20 9.84 21.21 0.21 0.41 16 10 C -0.17 -1.05 10.18 21.22 0.22 -0.83 16 11 C -0.15 -0.86 11.23 66.72 0.75 -0.11 16 12 S 0.20 2.24 22.34 -56.49 -1.26 0.98 16 13 C 0.46 12.57 7.32 71.24 0.52 13.09 16 14 O -0.53 -17.70 15.74 21.96 0.35 -17.36 16 15 O -0.35 -10.32 10.12 -51.41 -0.52 -10.84 16 16 C 0.08 2.69 5.47 71.98 0.39 3.09 16 17 C -0.09 -3.71 5.53 30.59 0.17 -3.54 16 18 C 0.02 1.28 4.97 29.85 0.15 1.43 16 19 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 20 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 21 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 22 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 27 H 0.10 1.17 8.11 -2.39 -0.02 1.15 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.84 6.12 -2.39 -0.01 0.83 16 30 H 0.43 7.69 8.21 -96.74 -0.79 6.89 16 31 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.18 0.13 8.06 -2.92 -0.02 0.10 16 33 H 0.21 -0.14 8.06 -2.91 -0.02 -0.16 16 34 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 35 H 0.07 2.38 8.13 -2.38 -0.02 2.36 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.77 373.19 -0.27 -77.05 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.27 Total: 7.16 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.30 Total: -25.58 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -0.62 Total: -77.62 kcal Atomic # 8 Polarization: -77.45 SS G_CDS: -4.66 Total: -82.11 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 57.15 SS G_CDS: -1.59 Total: 55.56 kcal Total: -76.77 -0.27 -77.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915021191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.537 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds