Wall clock time and date at job start Wed Apr 1 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48504 * 109.46921 * 274.97794 * 3 2 1 5 5 H 1.48497 * 109.47178 * 34.97817 * 3 2 1 6 6 H 1.48499 * 109.47044 * 154.98071 * 3 2 1 7 7 C 1.39909 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99882 * 197.77556 * 7 2 1 9 9 C 1.41156 * 119.99707 * 17.78507 * 7 2 1 10 10 C 1.40871 * 120.16574 * 25.02137 * 9 7 2 11 11 C 1.36367 * 119.82736 * 180.25051 * 10 9 7 12 12 C 1.39481 * 120.17067 * 359.48347 * 11 10 9 13 13 N 1.39232 * 119.83739 * 180.29785 * 12 11 10 14 14 C 1.34781 * 119.99794 * 324.05661 * 13 12 11 15 15 O 1.21278 * 120.00112 * 5.18841 * 14 13 12 16 16 C 1.50697 * 120.00008 * 185.18133 * 14 13 12 17 17 O 1.45193 * 109.47233 * 180.02562 * 16 14 13 18 18 C 1.34236 * 117.00315 * 179.97438 * 17 16 14 19 19 O 1.20824 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00027 * 179.97438 * 18 17 16 21 21 O 1.42902 * 109.46780 * 180.02562 * 20 18 17 22 22 C 1.42899 * 113.99647 * 179.97438 * 21 20 18 23 23 F 1.39902 * 109.46964 * 60.00370 * 22 21 20 24 24 F 1.39902 * 109.47092 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47698 * 299.99794 * 22 21 20 26 26 C 1.39480 * 120.32954 * 0.27398 * 12 11 10 27 27 C 1.36371 * 120.17132 * 359.97438 * 26 12 11 28 28 H 0.97008 * 119.99881 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.08333 * 0.03691 * 10 9 7 30 30 H 1.08005 * 119.91992 * 179.75715 * 11 10 9 31 31 H 0.97003 * 120.00442 * 144.05986 * 13 12 11 32 32 H 1.09000 * 109.47121 * 300.00346 * 16 14 13 33 33 H 1.08997 * 109.47320 * 60.00166 * 16 14 13 34 34 H 1.09000 * 109.46975 * 299.99725 * 20 18 17 35 35 H 1.08998 * 109.46888 * 60.00460 * 20 18 17 36 36 H 1.08001 * 119.91838 * 180.02562 * 26 12 11 37 37 H 1.08005 * 120.08603 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4968 2.6200 0.8026 6 1 3.5890 1.4121 0.5921 7 6 2.0083 -1.2117 0.0005 8 1 3.0496 -1.2338 0.2861 9 6 1.3530 -2.4050 -0.3723 10 6 0.2278 -2.3600 -1.2187 11 6 -0.4031 -3.5167 -1.5704 12 6 0.0696 -4.7430 -1.1031 13 7 -0.5761 -5.9202 -1.4716 14 6 -1.9167 -5.9386 -1.6100 15 8 -2.5512 -4.9103 -1.5062 16 6 -2.6272 -7.2369 -1.8940 17 8 -4.0548 -6.9944 -1.9992 18 6 -4.8363 -8.0561 -2.2522 19 8 -4.3437 -9.1518 -2.3811 20 6 -6.3282 -7.8815 -2.3744 21 8 -6.9354 -9.1470 -2.6427 22 6 -8.3571 -9.0927 -2.7769 23 9 -8.6934 -8.2409 -3.8346 24 9 -8.8503 -10.3757 -3.0371 25 9 -8.9193 -8.6082 -1.5910 26 6 1.1862 -4.7959 -0.2689 27 6 1.8245 -3.6473 0.0955 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1364 -1.4117 -1.5852 30 1 -1.2683 -3.4837 -2.2160 31 1 -0.0613 -6.7272 -1.6287 32 1 -2.2599 -7.6546 -2.8314 33 1 -2.4365 -7.9402 -1.0834 34 1 -6.7245 -7.4791 -1.4422 35 1 -6.5477 -7.1926 -3.1901 36 1 1.5467 -5.7491 0.0887 37 1 2.6892 -3.6899 0.7412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923711216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:32 Heat of formation + Delta-G solvation = -294.102669 kcal Electronic energy + Delta-G solvation = -28598.227752 eV Core-core repulsion = 23504.978948 eV Total energy + Delta-G solvation = -5093.248804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.71817 -48.45501 -48.40537 -41.07934 -39.68989 -38.69608 -37.37963 -36.58162 -34.56049 -33.08539 -30.69527 -29.63833 -29.36728 -28.01921 -25.59916 -24.80472 -22.13587 -21.50828 -21.08350 -20.13458 -19.82038 -19.53453 -19.37666 -17.98693 -17.65950 -17.37913 -17.35884 -16.42726 -16.07045 -15.96970 -15.39849 -15.24229 -15.09404 -15.07130 -14.81319 -14.60709 -14.53569 -14.48797 -14.20747 -13.98116 -13.46939 -13.40603 -12.90290 -12.74175 -12.68936 -12.12706 -11.90864 -11.71973 -11.57158 -11.19850 -11.11475 -11.02176 -10.97487 -10.57608 -10.02734 -9.96855 -9.54324 -9.20273 -8.77001 -7.59557 -7.11968 -6.80703 -4.36135 0.88095 1.62847 2.00224 2.44304 2.67079 2.89028 3.03283 3.05524 3.08435 3.22115 3.39603 3.56206 3.58573 3.88938 4.11562 4.29115 4.32210 4.56295 4.71873 4.86990 4.91283 5.19521 5.63875 5.85024 6.07824 6.33218 6.68064 6.89150 6.97681 7.07875 7.19464 7.20942 7.52637 7.58175 7.86314 7.99511 8.09006 8.22446 8.54803 8.60260 8.82061 8.92434 10.12459 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.023071 B = 0.001699 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.378196 B =16478.927865 C =17410.530788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.108 3.892 10 C -0.159 4.159 11 C -0.083 4.083 12 C -0.016 4.016 13 N -0.643 5.643 14 C 0.497 3.503 15 O -0.505 6.505 16 C 0.054 3.946 17 O -0.321 6.321 18 C 0.471 3.529 19 O -0.483 6.483 20 C 0.065 3.935 21 O -0.356 6.356 22 C 0.603 3.397 23 F -0.171 7.171 24 F -0.135 7.135 25 F -0.171 7.171 26 C -0.099 4.099 27 C -0.217 4.217 28 H 0.282 0.718 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.397 0.603 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 -15.008 -5.468 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.105 3.895 10 C -0.179 4.179 11 C -0.103 4.103 12 C -0.108 4.108 13 N -0.288 5.288 14 C 0.281 3.719 15 O -0.380 6.380 16 C -0.023 4.023 17 O -0.236 6.236 18 C 0.311 3.689 19 O -0.369 6.369 20 C -0.011 4.011 21 O -0.279 6.279 22 C 0.511 3.489 23 F -0.153 7.153 24 F -0.116 7.116 25 F -0.153 7.153 26 C -0.119 4.119 27 C -0.237 4.237 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.230 0.770 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.534 -14.600 -5.413 20.631 hybrid contribution 0.350 0.259 0.028 0.436 sum -13.184 -14.341 -5.385 20.211 Atomic orbital electron populations 1.69863 1.07598 1.29443 1.34046 1.25970 0.94754 1.01486 0.92298 0.86274 0.80556 0.80564 0.79195 1.19280 1.20242 1.18529 1.19594 0.98164 0.91271 1.39581 0.90242 1.17700 0.91109 0.92108 0.88577 1.20993 0.99127 0.96819 1.00956 1.20538 0.98800 0.91506 0.99438 1.17112 1.00031 0.84542 1.09081 1.42707 1.05249 1.12881 1.67919 1.19852 0.82966 0.89514 0.79544 1.90770 1.65564 1.33418 1.48237 1.22849 0.77014 0.97687 1.04740 1.86495 1.19454 1.36379 1.81289 1.22521 0.89183 0.82954 0.74212 1.90752 1.75334 1.26399 1.44406 1.21933 0.88731 0.84048 1.06369 1.88310 1.15933 1.32351 1.91330 1.19333 0.80264 0.74660 0.74609 1.93296 1.92550 1.71406 1.58066 1.93304 1.86266 1.38232 1.93836 1.93296 1.85806 1.88185 1.48001 1.20055 0.96667 0.97283 0.97857 1.20548 1.03961 0.92438 1.06728 0.90669 0.86234 0.87552 0.76953 0.87991 0.87843 0.85898 0.85909 0.89093 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.25 10.98 55.55 0.61 -19.64 16 2 C 0.07 1.82 5.13 -17.33 -0.09 1.73 16 3 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.83 9.04 -37.85 -0.34 -12.17 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.11 2.81 5.57 -106.80 -0.59 2.22 16 10 C -0.16 -4.15 8.63 -39.26 -0.34 -4.49 16 11 C -0.08 -2.00 8.61 -39.79 -0.34 -2.34 16 12 C -0.02 -0.34 6.30 -83.57 -0.53 -0.87 16 13 N -0.64 -10.40 5.30 -9.74 -0.05 -10.45 16 14 C 0.50 8.15 7.74 -10.99 -0.09 8.07 16 15 O -0.51 -10.74 13.94 -14.10 -0.20 -10.93 16 16 C 0.05 0.63 5.95 36.00 0.21 0.85 16 17 O -0.32 -3.96 9.75 -45.92 -0.45 -4.41 16 18 C 0.47 5.04 8.03 36.01 0.29 5.33 16 19 O -0.48 -6.36 16.25 -25.48 -0.41 -6.78 16 20 C 0.07 0.48 6.25 36.01 0.22 0.70 16 21 O -0.36 -3.15 10.11 -55.18 -0.56 -3.71 16 22 C 0.60 4.47 3.75 101.05 0.38 4.85 16 23 F -0.17 -1.22 16.86 2.25 0.04 -1.18 16 24 F -0.14 -1.08 17.53 2.25 0.04 -1.04 16 25 F -0.17 -1.22 16.86 2.25 0.04 -1.19 16 26 C -0.10 -2.07 9.90 -39.79 -0.39 -2.46 16 27 C -0.22 -5.08 9.74 -39.26 -0.38 -5.47 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.12 3.24 6.19 -52.49 -0.32 2.91 16 30 H 0.11 2.57 6.24 -52.48 -0.33 2.24 16 31 H 0.40 4.69 8.82 -40.82 -0.36 4.33 16 32 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.10 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.12 0.64 7.73 -51.93 -0.40 0.23 16 35 H 0.12 0.62 7.73 -51.93 -0.40 0.22 16 36 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -32.13 348.45 -5.77 -37.90 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.05 Total: 6.95 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.99 Total: -4.03 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.56 Total: -30.09 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.62 Total: -25.83 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.12 Total: -3.41 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.13 -5.77 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923711216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -256.203 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds