Wall clock time and date at job start Wed Apr 1 2020 04:37:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86804 * 120.00088 * 2 1
4 4 H 1.48498 * 109.47077 * 270.00379 * 3 2 1
5 5 H 1.48501 * 109.46934 * 30.00142 * 3 2 1
6 6 H 1.48500 * 109.47236 * 150.00534 * 3 2 1
7 7 C 1.37875 * 120.00185 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99983 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99936 * 359.97438 * 7 2 1
10 10 N 1.46492 * 109.47192 * 179.97438 * 9 7 2
11 11 C 1.34784 * 120.00066 * 180.02562 * 10 9 7
12 12 O 1.21279 * 119.99806 * 359.97438 * 11 10 9
13 13 C 1.50701 * 119.99827 * 180.02562 * 11 10 9
14 14 O 1.45201 * 109.46850 * 180.02562 * 13 11 10
15 15 C 1.34759 * 116.99914 * 179.97438 * 14 13 11
16 16 O 1.21522 * 120.00026 * 359.97438 * 15 14 13
17 17 C 1.47313 * 119.99703 * 179.97438 * 15 14 13
18 18 C 1.39877 * 120.11911 * 0.02562 * 17 15 14
19 19 C 1.37575 * 119.92849 * 180.23067 * 18 17 15
20 20 C 1.39123 * 120.16736 * 359.46966 * 19 18 17
21 21 O 1.35695 * 119.87905 * 180.25682 * 20 19 18
22 22 C 1.42898 * 117.00592 * 0.29103 * 21 20 19
23 23 F 1.39900 * 109.47429 * 300.00283 * 22 21 20
24 24 F 1.39902 * 109.47000 * 60.00031 * 22 21 20
25 25 C 1.38845 * 120.23335 * 0.54779 * 20 19 18
26 26 C 1.38037 * 120.06896 * 359.71138 * 25 20 19
27 27 F 1.35096 * 120.08431 * 179.97438 * 26 25 20
28 28 H 0.97000 * 119.99668 * 359.97438 * 1 2 3
29 29 H 1.09003 * 109.46809 * 59.99801 * 9 7 2
30 30 H 1.09000 * 109.47007 * 299.99888 * 9 7 2
31 31 H 0.97003 * 120.00273 * 359.97438 * 10 9 7
32 32 H 1.08991 * 109.47230 * 59.99729 * 13 11 10
33 33 H 1.09000 * 109.47120 * 299.99608 * 13 11 10
34 34 H 1.08002 * 120.03050 * 359.94601 * 18 17 15
35 35 H 1.08002 * 119.91060 * 179.74026 * 19 18 17
36 36 H 1.08994 * 109.47519 * 179.97438 * 22 21 20
37 37 H 1.07994 * 119.96409 * 179.72597 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5468 1.4402 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 7 2.2031 -3.6126 -0.0018
11 6 1.7538 -4.8834 -0.0025
12 8 0.5614 -5.1050 -0.0017
13 6 2.7332 -6.0288 -0.0032
14 8 2.0072 -7.2862 -0.0045
15 6 2.7411 -8.4164 -0.0058
16 8 3.9547 -8.3528 -0.0063
17 6 2.0723 -9.7290 -0.0067
18 6 0.6756 -9.8050 -0.0067
19 6 0.0551 -11.0329 -0.0027
20 6 0.8132 -12.1994 -0.0097
21 8 0.1950 -13.4073 -0.0110
22 6 -1.2340 -13.4050 -0.0113
23 9 -1.6995 -12.7457 1.1315
24 9 -1.6990 -12.7436 -1.1530
25 6 2.2000 -12.1319 -0.0094
26 6 2.8327 -10.9051 -0.0081
27 9 4.1821 -10.8391 -0.0072
28 1 -0.4849 0.8401 0.0004
29 1 0.6241 -2.5566 -0.8903
30 1 0.6248 -2.5571 0.8897
31 1 3.1568 -3.4354 -0.0028
32 1 3.3598 -5.9715 0.8867
33 1 3.3598 -5.9705 -0.8932
34 1 0.0850 -8.9008 -0.0052
35 1 -1.0234 -11.0912 0.0016
36 1 -1.5991 -14.4319 -0.0128
37 1 2.7842 -13.0402 -0.0104
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000924035859.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:30
Heat of formation + Delta-G solvation = -279.845241 kcal
Electronic energy + Delta-G solvation = -28927.769465 eV
Core-core repulsion = 23835.138910 eV
Total energy + Delta-G solvation = -5092.630555 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 347.086 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-49.97105 -49.34874 -47.94820 -40.87656 -40.25477 -38.76647 -37.73695 -36.34131
-34.26978 -32.43196 -31.85722 -30.98972 -29.18478 -27.18981 -26.55517 -24.27185
-23.55047 -22.59549 -21.42460 -19.97219 -19.84021 -18.92449 -18.53977 -18.41812
-17.65645 -17.14317 -16.77208 -16.62531 -16.48670 -16.01951 -15.68036 -15.47852
-15.17835 -15.14593 -14.69555 -14.59841 -14.54154 -14.34424 -14.24858 -14.18208
-13.88881 -13.20373 -13.07397 -13.05550 -12.61443 -12.39623 -12.14929 -12.01198
-11.86287 -11.78388 -11.02754 -10.93239 -10.74010 -10.73304 -10.35573 -9.55635
-9.45430 -9.21292 -9.16515 -8.79579 -8.00959 -6.20764 -4.28181 0.06825
0.58225 1.72915 2.13953 2.26062 2.82033 3.06990 3.15597 3.22679
3.28964 3.31326 3.62018 3.68461 3.88494 3.98210 4.09058 4.24057
4.30922 4.44048 4.51886 4.69827 5.05128 5.15393 5.21645 5.28425
5.31753 5.40901 5.55829 5.57922 5.76841 6.19214 6.28248 7.20481
7.28209 7.44094 7.53205 7.61482 7.90578 8.47709 8.69243 8.93915
9.38249 10.89337
Molecular weight = 347.09amu
Principal moments of inertia in cm(-1)
A = 0.018455 B = 0.001903 C = 0.001745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.825420 B =14713.440033 C =16045.169522
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.906 3.094
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.545 4.545
8 H 0.064 0.936
9 C 0.251 3.749
10 N -0.706 5.706
11 C 0.501 3.499
12 O -0.535 6.535
13 C 0.050 3.950
14 O -0.323 6.323
15 C 0.510 3.490
16 O -0.497 6.497
17 C -0.185 4.185
18 C 0.013 3.987
19 C -0.217 4.217
20 C 0.171 3.829
21 O -0.314 6.314
22 C 0.412 3.588
23 F -0.193 7.193
24 F -0.193 7.193
25 C -0.190 4.190
26 C 0.203 3.797
27 F -0.105 7.105
28 H 0.267 0.733
29 H 0.030 0.970
30 H 0.030 0.970
31 H 0.393 0.607
32 H 0.099 0.901
33 H 0.099 0.901
34 H 0.163 0.837
35 H 0.150 0.850
36 H 0.188 0.812
37 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.656 -30.729 -0.022 30.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.140 4.140
3 Si 0.733 3.267
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.584 4.584
8 H 0.083 0.917
9 C 0.131 3.869
10 N -0.356 5.356
11 C 0.283 3.717
12 O -0.412 6.412
13 C -0.027 4.027
14 O -0.238 6.238
15 C 0.354 3.646
16 O -0.386 6.386
17 C -0.188 4.188
18 C -0.005 4.005
19 C -0.235 4.235
20 C 0.127 3.873
21 O -0.231 6.231
22 C 0.322 3.678
23 F -0.175 7.175
24 F -0.175 7.175
25 C -0.209 4.209
26 C 0.183 3.817
27 F -0.082 7.082
28 H 0.076 0.924
29 H 0.048 0.952
30 H 0.048 0.952
31 H 0.226 0.774
32 H 0.117 0.883
33 H 0.117 0.883
34 H 0.181 0.819
35 H 0.167 0.833
36 H 0.205 0.795
37 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 0.076 -30.819 -0.017 30.819
hybrid contribution 1.019 1.300 -0.012 1.651
sum 1.094 -29.519 -0.028 29.539
Atomic orbital electron populations
1.69973 1.06115 1.27421 1.48676 1.24956 0.94944 0.99508 0.94603
0.86384 0.79606 0.82488 0.78257 1.20422 1.20978 1.19711 1.21208
0.93350 0.90291 1.53523 0.91743 1.19181 0.88154 0.81513 0.98045
1.46366 1.11572 1.05316 1.72343 1.19855 0.89072 0.83968 0.78771
1.90702 1.16289 1.84557 1.49667 1.22912 0.94435 0.80516 1.04855
1.86574 1.39803 1.13794 1.83668 1.20668 0.85555 0.84762 0.73611
1.90912 1.14315 1.87876 1.45455 1.19145 0.94365 0.89742 1.15524
1.21347 0.92080 0.98883 0.88236 1.21644 1.01574 0.91542 1.08790
1.18730 0.91607 0.83702 0.93294 1.86607 1.20213 1.28733 1.87550
1.23478 0.77472 0.94755 0.72045 1.93137 1.88348 1.84216 1.51773
1.93139 1.88362 1.84146 1.51835 1.20112 0.91922 0.97722 1.11140
1.17133 0.77509 0.91803 0.95273 1.91642 1.27304 1.96944 1.92346
0.92365 0.95235 0.95217 0.77370 0.88271 0.88282 0.81917 0.83256
0.79544 0.82440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16
2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
3 Si 0.91 20.64 29.54 -169.99 -5.02 15.61 16
4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
7 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16
8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16
9 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16
10 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16
11 C 0.50 9.87 7.91 -10.98 -0.09 9.79 16
12 O -0.53 -12.75 16.50 -14.10 -0.23 -12.99 16
13 C 0.05 0.76 5.95 36.01 0.21 0.98 16
14 O -0.32 -5.09 9.00 -47.33 -0.43 -5.51 16
15 C 0.51 7.44 7.88 34.42 0.27 7.71 16
16 O -0.50 -8.11 15.12 -19.28 -0.29 -8.40 16
17 C -0.19 -2.23 5.88 -104.91 -0.62 -2.85 16
18 C 0.01 0.13 9.60 -39.21 -0.38 -0.24 16
19 C -0.22 -1.92 8.22 -39.49 -0.32 -2.24 16
20 C 0.17 1.41 6.49 -39.03 -0.25 1.16 16
21 O -0.31 -1.95 10.42 -18.79 -0.20 -2.15 16
22 C 0.41 1.63 5.98 101.05 0.60 2.23 16
23 F -0.19 -1.17 15.55 2.25 0.04 -1.14 16
24 F -0.19 -1.17 15.58 2.25 0.04 -1.14 16
25 C -0.19 -1.60 9.95 -39.43 -0.39 -1.99 16
26 C 0.20 2.22 7.28 -38.97 -0.28 1.93 16
27 F -0.10 -1.30 15.54 2.25 0.03 -1.27 16
28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16
30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16
32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16
33 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16
34 H 0.16 1.68 7.60 -52.49 -0.40 1.28 16
35 H 0.15 1.18 5.07 -52.49 -0.27 0.92 16
36 H 0.19 -0.22 8.14 -51.93 -0.42 -0.64 16
37 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16
LS Contribution 348.37 15.07 5.25 5.25
Total: -1.00 -34.84 348.37 -5.18 -40.02
By element:
Atomic # 1 Polarization: 4.80 SS G_CDS: -3.07 Total: 1.73 kcal
Atomic # 6 Polarization: 11.43 SS G_CDS: -1.69 Total: 9.74 kcal
Atomic # 7 Polarization: -40.17 SS G_CDS: 0.40 Total: -39.77 kcal
Atomic # 8 Polarization: -27.89 SS G_CDS: -1.15 Total: -29.04 kcal
Atomic # 9 Polarization: -3.64 SS G_CDS: 0.11 Total: -3.54 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -34.84 -5.18 -40.02 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000924035859.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -239.824 kcal
(2) G-P(sol) polarization free energy of solvation -34.840 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -279.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds