Wall clock time and date at job start Wed Apr 1 2020 04:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47077 * 270.00379 * 3 2 1 5 5 H 1.48501 * 109.46934 * 30.00142 * 3 2 1 6 6 H 1.48500 * 109.47236 * 150.00534 * 3 2 1 7 7 C 1.37875 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.34784 * 120.00066 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99806 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99827 * 180.02562 * 11 10 9 14 14 O 1.45201 * 109.46850 * 180.02562 * 13 11 10 15 15 C 1.34759 * 116.99914 * 179.97438 * 14 13 11 16 16 O 1.21522 * 120.00026 * 359.97438 * 15 14 13 17 17 C 1.47313 * 119.99703 * 179.97438 * 15 14 13 18 18 C 1.39877 * 120.11911 * 0.02562 * 17 15 14 19 19 C 1.37575 * 119.92849 * 180.23067 * 18 17 15 20 20 C 1.39123 * 120.16736 * 359.46966 * 19 18 17 21 21 O 1.35695 * 119.87905 * 180.25682 * 20 19 18 22 22 C 1.42898 * 117.00592 * 0.29103 * 21 20 19 23 23 F 1.39900 * 109.47429 * 300.00283 * 22 21 20 24 24 F 1.39902 * 109.47000 * 60.00031 * 22 21 20 25 25 C 1.38845 * 120.23335 * 0.54779 * 20 19 18 26 26 C 1.38037 * 120.06896 * 359.71138 * 25 20 19 27 27 F 1.35096 * 120.08431 * 179.97438 * 26 25 20 28 28 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46809 * 59.99801 * 9 7 2 30 30 H 1.09000 * 109.47007 * 299.99888 * 9 7 2 31 31 H 0.97003 * 120.00273 * 359.97438 * 10 9 7 32 32 H 1.08991 * 109.47230 * 59.99729 * 13 11 10 33 33 H 1.09000 * 109.47120 * 299.99608 * 13 11 10 34 34 H 1.08002 * 120.03050 * 359.94601 * 18 17 15 35 35 H 1.08002 * 119.91060 * 179.74026 * 19 18 17 36 36 H 1.08994 * 109.47519 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.96409 * 179.72597 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5614 -5.1050 -0.0017 13 6 2.7332 -6.0288 -0.0032 14 8 2.0072 -7.2862 -0.0045 15 6 2.7411 -8.4164 -0.0058 16 8 3.9547 -8.3528 -0.0063 17 6 2.0723 -9.7290 -0.0067 18 6 0.6756 -9.8050 -0.0067 19 6 0.0551 -11.0329 -0.0027 20 6 0.8132 -12.1994 -0.0097 21 8 0.1950 -13.4073 -0.0110 22 6 -1.2340 -13.4050 -0.0113 23 9 -1.6995 -12.7457 1.1315 24 9 -1.6990 -12.7436 -1.1530 25 6 2.2000 -12.1319 -0.0094 26 6 2.8327 -10.9051 -0.0081 27 9 4.1821 -10.8391 -0.0072 28 1 -0.4849 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 3.1568 -3.4354 -0.0028 32 1 3.3598 -5.9715 0.8867 33 1 3.3598 -5.9705 -0.8932 34 1 0.0850 -8.9008 -0.0052 35 1 -1.0234 -11.0912 0.0016 36 1 -1.5991 -14.4319 -0.0128 37 1 2.7842 -13.0402 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924035859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:30 Heat of formation + Delta-G solvation = -279.845241 kcal Electronic energy + Delta-G solvation = -28927.769465 eV Core-core repulsion = 23835.138910 eV Total energy + Delta-G solvation = -5092.630555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97105 -49.34874 -47.94820 -40.87656 -40.25477 -38.76647 -37.73695 -36.34131 -34.26978 -32.43196 -31.85722 -30.98972 -29.18478 -27.18981 -26.55517 -24.27185 -23.55047 -22.59549 -21.42460 -19.97219 -19.84021 -18.92449 -18.53977 -18.41812 -17.65645 -17.14317 -16.77208 -16.62531 -16.48670 -16.01951 -15.68036 -15.47852 -15.17835 -15.14593 -14.69555 -14.59841 -14.54154 -14.34424 -14.24858 -14.18208 -13.88881 -13.20373 -13.07397 -13.05550 -12.61443 -12.39623 -12.14929 -12.01198 -11.86287 -11.78388 -11.02754 -10.93239 -10.74010 -10.73304 -10.35573 -9.55635 -9.45430 -9.21292 -9.16515 -8.79579 -8.00959 -6.20764 -4.28181 0.06825 0.58225 1.72915 2.13953 2.26062 2.82033 3.06990 3.15597 3.22679 3.28964 3.31326 3.62018 3.68461 3.88494 3.98210 4.09058 4.24057 4.30922 4.44048 4.51886 4.69827 5.05128 5.15393 5.21645 5.28425 5.31753 5.40901 5.55829 5.57922 5.76841 6.19214 6.28248 7.20481 7.28209 7.44094 7.53205 7.61482 7.90578 8.47709 8.69243 8.93915 9.38249 10.89337 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.001903 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.825420 B =14713.440033 C =16045.169522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.501 3.499 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.323 6.323 15 C 0.510 3.490 16 O -0.497 6.497 17 C -0.185 4.185 18 C 0.013 3.987 19 C -0.217 4.217 20 C 0.171 3.829 21 O -0.314 6.314 22 C 0.412 3.588 23 F -0.193 7.193 24 F -0.193 7.193 25 C -0.190 4.190 26 C 0.203 3.797 27 F -0.105 7.105 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.188 0.812 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -30.729 -0.022 30.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.027 4.027 14 O -0.238 6.238 15 C 0.354 3.646 16 O -0.386 6.386 17 C -0.188 4.188 18 C -0.005 4.005 19 C -0.235 4.235 20 C 0.127 3.873 21 O -0.231 6.231 22 C 0.322 3.678 23 F -0.175 7.175 24 F -0.175 7.175 25 C -0.209 4.209 26 C 0.183 3.817 27 F -0.082 7.082 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.181 0.819 35 H 0.167 0.833 36 H 0.205 0.795 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.076 -30.819 -0.017 30.819 hybrid contribution 1.019 1.300 -0.012 1.651 sum 1.094 -29.519 -0.028 29.539 Atomic orbital electron populations 1.69973 1.06115 1.27421 1.48676 1.24956 0.94944 0.99508 0.94603 0.86384 0.79606 0.82488 0.78257 1.20422 1.20978 1.19711 1.21208 0.93350 0.90291 1.53523 0.91743 1.19181 0.88154 0.81513 0.98045 1.46366 1.11572 1.05316 1.72343 1.19855 0.89072 0.83968 0.78771 1.90702 1.16289 1.84557 1.49667 1.22912 0.94435 0.80516 1.04855 1.86574 1.39803 1.13794 1.83668 1.20668 0.85555 0.84762 0.73611 1.90912 1.14315 1.87876 1.45455 1.19145 0.94365 0.89742 1.15524 1.21347 0.92080 0.98883 0.88236 1.21644 1.01574 0.91542 1.08790 1.18730 0.91607 0.83702 0.93294 1.86607 1.20213 1.28733 1.87550 1.23478 0.77472 0.94755 0.72045 1.93137 1.88348 1.84216 1.51773 1.93139 1.88362 1.84146 1.51835 1.20112 0.91922 0.97722 1.11140 1.17133 0.77509 0.91803 0.95273 1.91642 1.27304 1.96944 1.92346 0.92365 0.95235 0.95217 0.77370 0.88271 0.88282 0.81917 0.83256 0.79544 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 10 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 11 C 0.50 9.87 7.91 -10.98 -0.09 9.79 16 12 O -0.53 -12.75 16.50 -14.10 -0.23 -12.99 16 13 C 0.05 0.76 5.95 36.01 0.21 0.98 16 14 O -0.32 -5.09 9.00 -47.33 -0.43 -5.51 16 15 C 0.51 7.44 7.88 34.42 0.27 7.71 16 16 O -0.50 -8.11 15.12 -19.28 -0.29 -8.40 16 17 C -0.19 -2.23 5.88 -104.91 -0.62 -2.85 16 18 C 0.01 0.13 9.60 -39.21 -0.38 -0.24 16 19 C -0.22 -1.92 8.22 -39.49 -0.32 -2.24 16 20 C 0.17 1.41 6.49 -39.03 -0.25 1.16 16 21 O -0.31 -1.95 10.42 -18.79 -0.20 -2.15 16 22 C 0.41 1.63 5.98 101.05 0.60 2.23 16 23 F -0.19 -1.17 15.55 2.25 0.04 -1.14 16 24 F -0.19 -1.17 15.58 2.25 0.04 -1.14 16 25 C -0.19 -1.60 9.95 -39.43 -0.39 -1.99 16 26 C 0.20 2.22 7.28 -38.97 -0.28 1.93 16 27 F -0.10 -1.30 15.54 2.25 0.03 -1.27 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.16 1.68 7.60 -52.49 -0.40 1.28 16 35 H 0.15 1.18 5.07 -52.49 -0.27 0.92 16 36 H 0.19 -0.22 8.14 -51.93 -0.42 -0.64 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -34.84 348.37 -5.18 -40.02 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.07 Total: 1.73 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.69 Total: 9.74 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.40 Total: -39.77 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.15 Total: -29.04 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.11 Total: -3.54 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.84 -5.18 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924035859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.824 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds