Wall clock time and date at job start Wed Apr 1 2020 04:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47077 * 270.00379 * 3 2 1 5 5 H 1.48501 * 109.46934 * 30.00142 * 3 2 1 6 6 H 1.48500 * 109.47236 * 150.00534 * 3 2 1 7 7 C 1.37875 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.34784 * 120.00066 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99806 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99827 * 180.02562 * 11 10 9 14 14 O 1.45201 * 109.46850 * 180.02562 * 13 11 10 15 15 C 1.34759 * 116.99914 * 179.97438 * 14 13 11 16 16 O 1.21522 * 120.00026 * 359.97438 * 15 14 13 17 17 C 1.47313 * 119.99703 * 179.97438 * 15 14 13 18 18 C 1.39877 * 120.11911 * 0.02562 * 17 15 14 19 19 C 1.37575 * 119.92849 * 180.23067 * 18 17 15 20 20 C 1.39123 * 120.16736 * 359.46966 * 19 18 17 21 21 O 1.35695 * 119.87905 * 180.25682 * 20 19 18 22 22 C 1.42898 * 117.00592 * 0.29103 * 21 20 19 23 23 F 1.39900 * 109.47429 * 300.00283 * 22 21 20 24 24 F 1.39902 * 109.47000 * 60.00031 * 22 21 20 25 25 C 1.38845 * 120.23335 * 0.54779 * 20 19 18 26 26 C 1.38037 * 120.06896 * 359.71138 * 25 20 19 27 27 F 1.35096 * 120.08431 * 179.97438 * 26 25 20 28 28 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46809 * 59.99801 * 9 7 2 30 30 H 1.09000 * 109.47007 * 299.99888 * 9 7 2 31 31 H 0.97003 * 120.00273 * 359.97438 * 10 9 7 32 32 H 1.08991 * 109.47230 * 59.99729 * 13 11 10 33 33 H 1.09000 * 109.47120 * 299.99608 * 13 11 10 34 34 H 1.08002 * 120.03050 * 359.94601 * 18 17 15 35 35 H 1.08002 * 119.91060 * 179.74026 * 19 18 17 36 36 H 1.08994 * 109.47519 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.96409 * 179.72597 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5614 -5.1050 -0.0017 13 6 2.7332 -6.0288 -0.0032 14 8 2.0072 -7.2862 -0.0045 15 6 2.7411 -8.4164 -0.0058 16 8 3.9547 -8.3528 -0.0063 17 6 2.0723 -9.7290 -0.0067 18 6 0.6756 -9.8050 -0.0067 19 6 0.0551 -11.0329 -0.0027 20 6 0.8132 -12.1994 -0.0097 21 8 0.1950 -13.4073 -0.0110 22 6 -1.2340 -13.4050 -0.0113 23 9 -1.6995 -12.7457 1.1315 24 9 -1.6990 -12.7436 -1.1530 25 6 2.2000 -12.1319 -0.0094 26 6 2.8327 -10.9051 -0.0081 27 9 4.1821 -10.8391 -0.0072 28 1 -0.4849 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 3.1568 -3.4354 -0.0028 32 1 3.3598 -5.9715 0.8867 33 1 3.3598 -5.9705 -0.8932 34 1 0.0850 -8.9008 -0.0052 35 1 -1.0234 -11.0912 0.0016 36 1 -1.5991 -14.4319 -0.0128 37 1 2.7842 -13.0402 -0.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924035859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:29 Heat of formation + Delta-G solvation = -303.409691 kcal Electronic energy + Delta-G solvation = -28928.791296 eV Core-core repulsion = 23835.138910 eV Total energy + Delta-G solvation = -5093.652387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.36200 -50.22881 -48.35209 -41.89503 -41.09559 -40.35747 -38.47777 -37.56879 -36.19214 -34.42487 -32.64852 -31.79725 -30.71010 -28.59872 -27.43387 -25.19044 -24.61757 -24.13158 -22.42989 -21.66804 -20.42609 -19.63586 -19.39287 -19.01372 -18.93788 -18.23811 -17.95091 -17.76371 -17.44304 -17.15002 -16.95032 -16.93227 -16.20937 -16.14603 -16.12365 -15.69005 -15.37042 -14.99612 -14.95398 -14.75166 -14.67129 -14.56077 -14.53238 -14.06704 -13.86325 -13.74854 -13.71064 -13.04311 -12.94562 -12.91194 -12.72247 -12.53753 -12.23580 -11.98441 -11.87229 -11.50364 -10.93715 -10.82199 -10.29701 -9.94670 -9.92784 -8.30038 -6.46469 -0.77187 -0.16346 1.06938 1.15511 1.29011 1.44397 1.45942 1.53292 1.57426 2.23595 2.31687 2.48957 2.51638 2.88404 3.05228 3.27866 3.39464 3.52815 3.61723 3.63913 3.69022 3.77198 3.97062 4.01366 4.02681 4.47152 4.70119 4.78147 4.79212 5.02468 5.05956 5.10685 5.21651 5.40918 5.61240 5.62036 5.81645 6.40339 6.62280 6.76190 7.19469 7.34160 8.81998 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.001903 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.825420 B =14713.440033 C =16045.169522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.581 6.581 13 C 0.061 3.939 14 O -0.338 6.338 15 C 0.513 3.487 16 O -0.518 6.518 17 C -0.207 4.207 18 C 0.011 3.989 19 C -0.216 4.216 20 C 0.181 3.819 21 O -0.310 6.310 22 C 0.405 3.595 23 F -0.206 7.206 24 F -0.206 7.206 25 C -0.178 4.178 26 C 0.194 3.806 27 F -0.116 7.116 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.006 1.006 31 H 0.413 0.587 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.245 0.755 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -32.335 -0.019 32.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.287 3.713 12 O -0.461 6.461 13 C -0.016 4.016 14 O -0.254 6.254 15 C 0.359 3.641 16 O -0.409 6.409 17 C -0.209 4.209 18 C -0.008 4.008 19 C -0.234 4.234 20 C 0.136 3.864 21 O -0.226 6.226 22 C 0.316 3.684 23 F -0.188 7.188 24 F -0.188 7.188 25 C -0.197 4.197 26 C 0.174 3.826 27 F -0.094 7.094 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.249 0.751 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.174 0.826 35 H 0.176 0.824 36 H 0.261 0.739 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.488 -32.458 -0.013 32.492 hybrid contribution 0.471 1.631 -0.014 1.698 sum 1.960 -30.827 -0.027 30.889 Atomic orbital electron populations 1.70130 1.08200 1.28617 1.49836 1.26049 0.95794 1.03854 0.93866 0.85153 0.78477 0.76999 0.78567 1.19648 1.21007 1.17974 1.21612 0.94431 0.90416 1.53031 0.89623 1.18636 0.88549 0.83713 0.94668 1.46040 1.11774 1.04685 1.72486 1.20592 0.89225 0.84624 0.76847 1.90680 1.18745 1.85271 1.51433 1.22800 0.92709 0.78731 1.07374 1.86568 1.40537 1.14260 1.83988 1.21044 0.85373 0.84961 0.72741 1.90889 1.15056 1.88060 1.46858 1.19115 0.94991 0.88843 1.17952 1.21282 0.91473 0.99418 0.88596 1.21754 1.02087 0.91292 1.08286 1.18798 0.91709 0.84305 0.91634 1.86648 1.21703 1.27326 1.86937 1.24508 0.76144 0.96792 0.70906 1.93114 1.88361 1.84775 1.52538 1.93116 1.88376 1.84709 1.52603 1.20315 0.92210 0.97624 1.09556 1.17288 0.77024 0.92305 0.95945 1.91609 1.28192 1.97042 1.92578 0.92199 0.98880 0.98853 0.75103 0.85642 0.85652 0.82569 0.82404 0.73903 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.98 41.94 29.54 68.60 2.03 43.97 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -29.79 9.28 25.60 0.24 -29.56 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.36 5.43 85.64 0.46 14.82 16 10 N -0.70 -28.82 5.55 -466.79 -2.59 -31.41 16 11 C 0.50 20.06 7.91 87.66 0.69 20.76 16 12 O -0.58 -28.85 16.50 15.77 0.26 -28.59 16 13 C 0.06 1.78 5.95 71.24 0.42 2.21 16 14 O -0.34 -10.68 9.00 -50.31 -0.45 -11.13 16 15 C 0.51 14.97 7.88 70.21 0.55 15.52 16 16 O -0.52 -16.72 15.12 19.76 0.30 -16.42 16 17 C -0.21 -4.97 5.88 -20.05 -0.12 -5.09 16 18 C 0.01 0.22 9.60 22.51 0.22 0.44 16 19 C -0.22 -3.61 8.22 22.33 0.18 -3.42 16 20 C 0.18 2.61 6.49 22.63 0.15 2.76 16 21 O -0.31 -2.93 10.42 -90.15 -0.94 -3.87 16 22 C 0.40 2.03 5.98 113.37 0.68 2.71 16 23 F -0.21 -2.08 15.55 44.97 0.70 -1.38 16 24 F -0.21 -2.09 15.58 44.97 0.70 -1.39 16 25 C -0.18 -2.65 9.95 22.37 0.22 -2.43 16 26 C 0.19 4.10 7.28 22.66 0.16 4.26 16 27 F -0.12 -2.84 15.54 44.97 0.70 -2.14 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 32 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.16 3.39 7.60 -2.91 -0.02 3.37 16 35 H 0.16 2.34 5.07 -2.91 -0.01 2.33 16 36 H 0.25 -1.64 8.14 -2.39 -0.02 -1.66 16 37 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -78.49 348.37 5.72 -72.77 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.40 Total: 11.04 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 4.33 Total: 23.67 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.30 Total: -86.55 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -0.83 Total: -60.00 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 2.10 Total: -4.90 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -78.49 5.72 -72.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924035859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.636 kcal (2) G-P(sol) polarization free energy of solvation -78.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -309.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds